Hugging Face's logo

mgflast
/
easymode

Image Segmentation
English
cryoET
microscopy
segmentation
UNet
semantic
Model card Files
xet
 Community
mgflast commited on
Commit
92e7d72
·
verified ·
1 Parent(s): eed8643

Upload 34 files

Browse files
Files changed (34) hide show
  1. actin.h5 +3 -0
  2. actin.json +4 -0
  3. cytoplasm.h5 +3 -0
  4. cytoplasm.json +4 -0
  5. cytoplasmic_granule.h5 +3 -0
  6. cytoplasmic_granule.json +4 -0
  7. membrane.h5 +3 -0
  8. membrane.json +4 -0
  9. microtubule.h5 +3 -0
  10. microtubule.json +4 -0
  11. mitochondrial_granule.h5 +3 -0
  12. mitochondrial_granule.json +4 -0
  13. mitochondrion.h5 +3 -0
  14. mitochondrion.json +4 -0
  15. n2n_direct.json +4 -0
  16. n2n_splits.json +4 -0
  17. npc.h5 +3 -0
  18. npc.json +4 -0
  19. nuclear_envelope.h5 +3 -0
  20. nuclear_envelope.json +4 -0
  21. nucleus.h5 +3 -0
  22. nucleus.json +4 -0
  23. prohibitin.h5 +3 -0
  24. prohibitin.json +4 -0
  25. ribosome.h5 +3 -0
  26. ribosome.json +4 -0
  27. settings.txt +5 -0
  28. tric.h5 +3 -0
  29. tric.json +4 -0
  30. vault.h5 +3 -0
  31. vault.json +4 -0
  32. void.h5 +3 -0
  33. void.json +4 -0
  34. write_md.py +10 -0
actin.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:15f7c5a302c1b8b42edc171be5451e204011d5faa6b367c2eb2ee23110989242
3
+ size 515874960
actin.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
cytoplasm.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6e3de311a8a0fd9dcb3cca5cf728b7679ad12666baa05ce08850d3b21903ad67
3
+ size 515874960
cytoplasm.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
cytoplasmic_granule.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:063c2c755e64b545d26472eb1f74ab9c3c986e5bbf9d7c9f888db8c21d8d3905
3
+ size 515874960
cytoplasmic_granule.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
membrane.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:92d1dfb05d14ca31d0d63b8b2a16f7e920da60f785b91051f7dac9ae009000e6
3
+ size 515874960
membrane.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
microtubule.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:da4339c2aeb5f0919e633328fbf2defdc7a7f43f978e507542ff50c906734df8
3
+ size 515874960
microtubule.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
mitochondrial_granule.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d5d5afd3b075236cd517c469ebede6a045af05c9e9bdf0c078177fc5a15e79c4
3
+ size 515874960
mitochondrial_granule.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
mitochondrion.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d66d012c70e8d3be9174ff40bb924488d9285391770790510deec0f6fafd5a7f
3
+ size 515874960
mitochondrion.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 30.0,
3
+ "timestamp": "20251124113500"
4
+ }
n2n_direct.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
n2n_splits.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
npc.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:de59e4842a15ad9392c008016eeae131d1c8d8a6bc362406ae894cfbe94b057e
3
+ size 515874960
npc.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 30.0,
3
+ "timestamp": "20251124113500"
4
+ }
nuclear_envelope.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7649f85e1688c86a75c19f37088a479a2e3675346f4de3b20397cd834ab48175
3
+ size 515874960
nuclear_envelope.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 30.0,
3
+ "timestamp": "20251124113500"
4
+ }
nucleus.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a5dcef68fd7f077e7a9d2224ba23a411b91e26bc8574241bbe248525161721a1
3
+ size 515874960
nucleus.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
prohibitin.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:eaba5a0fe3cef5ec634ff6a3274e150e0e90ebd61f80e4b10c88e842100c7e93
3
+ size 515874960
prohibitin.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
ribosome.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:51d88624a26727dbba02e52c8606c8ed8b0db0bf20e1690342c0a0fe42796f91
3
+ size 515874960
ribosome.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
settings.txt ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ {
2
+ "MODEL_DIRECTORY": "/lmb/home/mlast/easymode",
3
+ "ARETOMO3_ENV": "module load cuda/12.4",
4
+ "ARETOMO3_PATH": "/public/EM/AreTomo/AreTomo3-2.1.10-cuda12.4/AreTomo3"
5
+ }
tric.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:669bc96e8f941533d05715f393f113fea7523f47cec9089c5106cdcf65281b3f
3
+ size 515874960
tric.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
vault.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:51d7eff6340aa9b718b0e298ed772fbafb842d72aed2488175b3bb88ac6ced27
3
+ size 515874960
vault.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 10.0,
3
+ "timestamp": "20251124113500"
4
+ }
void.h5 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b9e2c4b0645d16e5f9772668ddf75f203c811d4476d367a57ae3ff413f268620
3
+ size 515874960
void.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "apix": 20.0,
3
+ "timestamp": "20251124113500"
4
+ }
write_md.py ADDED
@@ -0,0 +1,10 @@
 
 
 
 
 
 
 
 
 
 
 
1
+ import json
2
+ import glob
3
+
4
+ models = glob.glob("*.h5")
5
+
6
+ for m in models:
7
+ metadata = {'apix': 10.0, 'timestamp': '20251124113500'}
8
+ with open(m.replace(".h5", ".json"), 'w') as f:
9
+ json.dump(metadata, f, indent=2)
10
+