Update README.md
Browse files
README.md
CHANGED
|
@@ -1,6 +1,6 @@
|
|
| 1 |
---
|
| 2 |
library_name: transformers
|
| 3 |
-
|
| 4 |
---
|
| 5 |
|
| 6 |
# Model card for RAD-DINO
|
|
@@ -24,27 +24,28 @@ RAD-DINO is described in detail in [RAD-DINO: Exploring Scalable Medical Image E
|
|
| 24 |
|
| 25 |
<!-- Address questions around how the model is intended to be used, including the foreseeable users of the model and those affected by the model. -->
|
| 26 |
|
| 27 |
-
|
|
|
|
|
|
|
|
|
|
| 28 |
|
| 29 |
<!-- This section is for the model use when fine-tuned for a task, or when plugged into a larger ecosystem/app -->
|
| 30 |
|
| 31 |
-
|
| 32 |
Some potential uses are:
|
| 33 |
|
| 34 |
- Image classification, with a classifier trained on top of the `CLS` token
|
| 35 |
- Image segmentation, with a decoder trained using the patch tokens
|
|
|
|
| 36 |
- Image retrieval, using nearest neighbors of the CLS token
|
| 37 |
- Report generation, with a language model to decode text
|
| 38 |
|
| 39 |
Fine-tuning RAD-DINO is typically not necessary to obtain good performance in downstream tasks.
|
| 40 |
|
| 41 |
-
### Out-of-scope use
|
| 42 |
|
| 43 |
<!-- This section addresses misuse, malicious use, and uses that the model will not work well for. -->
|
| 44 |
|
| 45 |
-
This model is shared for research purposes only.
|
| 46 |
-
It is not meant to be used for clinical practice.
|
| 47 |
-
|
| 48 |
## Bias, risks, and limitations
|
| 49 |
|
| 50 |
<!-- This section is meant to convey both technical and sociotechnical limitations. -->
|
|
@@ -116,7 +117,8 @@ torch.Size([1, 768, 16, 16])
|
|
| 116 |
<!-- This should link to a Dataset Card, perhaps with a short stub of information on what the training data is all about as well as documentation related to data pre-processing or additional filtering. -->
|
| 117 |
|
| 118 |
We used images from five public, deidentified chest X-ray datasets to train this checkpoint of RAD-DINO.
|
| 119 |
-
Images in the validation and test sets
|
|
|
|
| 120 |
|
| 121 |
| Dataset | Num. images |
|
| 122 |
| --------- | ----------: |
|
|
@@ -218,4 +220,4 @@ We used [SimpleITK](https://simpleitk.org/) and [Pydicom](https://pydicom.github
|
|
| 218 |
|
| 219 |
## Model card contact
|
| 220 |
|
| 221 |
-
Fernando Pérez-García ([`fperezgarcia@microsoft.com`](mailto:fperezgarcia@microsoft.com)).
|
|
|
|
| 1 |
---
|
| 2 |
library_name: transformers
|
| 3 |
+
license: mit
|
| 4 |
---
|
| 5 |
|
| 6 |
# Model card for RAD-DINO
|
|
|
|
| 24 |
|
| 25 |
<!-- Address questions around how the model is intended to be used, including the foreseeable users of the model and those affected by the model. -->
|
| 26 |
|
| 27 |
+
RAD-DINO is shared for research purposes only.
|
| 28 |
+
It is **not meant to be used for clinical practice**.
|
| 29 |
+
|
| 30 |
+
<!-- ### Downstream use -->
|
| 31 |
|
| 32 |
<!-- This section is for the model use when fine-tuned for a task, or when plugged into a larger ecosystem/app -->
|
| 33 |
|
| 34 |
+
The model is a vision backbone that can be plugged to other models for downstream tasks.
|
| 35 |
Some potential uses are:
|
| 36 |
|
| 37 |
- Image classification, with a classifier trained on top of the `CLS` token
|
| 38 |
- Image segmentation, with a decoder trained using the patch tokens
|
| 39 |
+
- Clustering, using the image embeddings directly
|
| 40 |
- Image retrieval, using nearest neighbors of the CLS token
|
| 41 |
- Report generation, with a language model to decode text
|
| 42 |
|
| 43 |
Fine-tuning RAD-DINO is typically not necessary to obtain good performance in downstream tasks.
|
| 44 |
|
| 45 |
+
<!-- ### Out-of-scope use -->
|
| 46 |
|
| 47 |
<!-- This section addresses misuse, malicious use, and uses that the model will not work well for. -->
|
| 48 |
|
|
|
|
|
|
|
|
|
|
| 49 |
## Bias, risks, and limitations
|
| 50 |
|
| 51 |
<!-- This section is meant to convey both technical and sociotechnical limitations. -->
|
|
|
|
| 117 |
<!-- This should link to a Dataset Card, perhaps with a short stub of information on what the training data is all about as well as documentation related to data pre-processing or additional filtering. -->
|
| 118 |
|
| 119 |
We used images from five public, deidentified chest X-ray datasets to train this checkpoint of RAD-DINO.
|
| 120 |
+
Images in the validation and test sets used to train [MAIRA](https://arxiv.org/abs/2311.13668) were excluded from the training set of RAD-DINO.
|
| 121 |
+
The list of image files used for training is available at [`./training_images.csv`](./training_images.csv).
|
| 122 |
|
| 123 |
| Dataset | Num. images |
|
| 124 |
| --------- | ----------: |
|
|
|
|
| 220 |
|
| 221 |
## Model card contact
|
| 222 |
|
| 223 |
+
Fernando Pérez-García ([`fperezgarcia@microsoft.com`](mailto:fperezgarcia@microsoft.com)).
|