| { |
| "dataset": "AUTISM", |
| "architecture": "TransformerGenerator", |
| "d_model": 384, |
| "nhead": 6, |
| "nlayers": 12, |
| "dim_embedding": 384, |
| "dropout": 0.1, |
| "nclass": 2, |
| "pad_token": "<pad>", |
| "cell_emb_style": "avg-pool", |
| "context_specific_projections": true, |
| "constant_ctx": false, |
| "only_contrastive": true, |
| "DA": true, |
| "lambda_sinkhorn": 0.005, |
| "contexts": [ |
| "disease", |
| "cell_type", |
| "tissue" |
| ], |
| "merged_contexts": "disease_cell_type_tissue", |
| "vocab_size": 17028, |
| "max_length_up": 1024, |
| "max_length_down": 1024, |
| "temperature": 0.1, |
| "seed": 20, |
| "training_epoch": 15, |
| "training_global_step": 144000, |
| "data_composition": { |
| "diseases": [ |
| "ASD", |
| "Control" |
| ], |
| "tissues": [ |
| "ACC", |
| "PFC" |
| ], |
| "cell_type_ontology_ids": [ |
| "CL:0000099", |
| "CL:0000115", |
| "CL:0000128", |
| "CL:0000129", |
| "CL:0000540", |
| "CL:0002453", |
| "CL:4023016", |
| "CL:4023017", |
| "CL:4023018", |
| "CL:4030059", |
| "CL:4030063", |
| "CL:4030067", |
| "CL:4042007", |
| "CL:4042008" |
| ] |
| } |
| } |
