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CASCADE-Alzheimer

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CASCADE-Alzheimer
File size: 1,225 Bytes
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{
  "dataset": "SEATTLE",
  "architecture": "TransformerGenerator",
  "d_model": 384,
  "nhead": 6,
  "nlayers": 12,
  "dim_embedding": 384,
  "dropout": 0.1,
  "nclass": 2,
  "pad_token": "<pad>",
  "cell_emb_style": "avg-pool",
  "context_specific_projections": true,
  "constant_ctx": false,
  "only_contrastive": true,
  "DA": true,
  "lambda_sinkhorn": 0.005,
  "contexts": [
    "disease",
    "cell_type",
    "tissue"
  ],
  "merged_contexts": "disease_cell_type_tissue",
  "vocab_size": 18370,
  "max_length_up": 1024,
  "max_length_down": 1024,
  "temperature": 0.1,
  "seed": 20,
  "training_epoch": 0,
  "training_global_step": 40000,
  "data_composition": {
    "diseases": [
      "dementia",
      "normal"
    ],
    "tissues": [
      "dorsolateral prefrontal cortex",
      "middle temporal gyrus"
    ],
    "cell_type_ontology_ids": [
      "CL:0000128",
      "CL:0000129",
      "CL:0002453",
      "CL:0002605",
      "CL:1001602",
      "CL:4023011",
      "CL:4023012",
      "CL:4023013",
      "CL:4023015",
      "CL:4023016",
      "CL:4023017",
      "CL:4023018",
      "CL:4023036",
      "CL:4023038",
      "CL:4023040",
      "CL:4023041",
      "CL:4023051",
      "CL:4023064"
    ]
  }
}