{ "dataset": "SEATTLE", "architecture": "TransformerGenerator", "d_model": 384, "nhead": 6, "nlayers": 12, "dim_embedding": 384, "dropout": 0.1, "nclass": 2, "pad_token": "", "cell_emb_style": "avg-pool", "context_specific_projections": true, "constant_ctx": false, "only_contrastive": true, "DA": true, "lambda_sinkhorn": 0.005, "contexts": [ "disease", "cell_type", "tissue" ], "merged_contexts": "disease_cell_type_tissue", "vocab_size": 18370, "max_length_up": 1024, "max_length_down": 1024, "temperature": 0.1, "seed": 20, "training_epoch": 0, "training_global_step": 40000, "data_composition": { "diseases": [ "dementia", "normal" ], "tissues": [ "dorsolateral prefrontal cortex", "middle temporal gyrus" ], "cell_type_ontology_ids": [ "CL:0000128", "CL:0000129", "CL:0002453", "CL:0002605", "CL:1001602", "CL:4023011", "CL:4023012", "CL:4023013", "CL:4023015", "CL:4023016", "CL:4023017", "CL:4023018", "CL:4023036", "CL:4023038", "CL:4023040", "CL:4023041", "CL:4023051", "CL:4023064" ] } }