add pretrained checkpoint
Browse files- pretrained/all_dict_mean_std.csv +0 -0
- pretrained/args.json +48 -0
- pretrained/best_model.pt +3 -0
- pretrained/vocab.json +0 -0
pretrained/all_dict_mean_std.csv
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pretrained/args.json
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{
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"data_source": "/scratch/hdd001/home/haotian/spatial_data/parquets_August_16_sample_zero_coordinates/combined_all_counts",
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"save_dir": "/scratch/hdd001/home/haotian/spatial_data/spatial_pretrain_save/spatial-continual-Nov29-05-56-2024",
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"load_model": "/scratch/ssd004/scratch/chloexq/scGPT_models/scGPT_human_model",
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"n_hvg": null,
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"valid_size_or_ratio": 0.003,
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"grad_accu_steps": 16,
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"pad_token": "<pad>",
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"input_style": "binned",
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"binning_style": "quantile",
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"input_emb_style": "continuous",
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"n_bins": 51,
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"max_seq_len": 600,
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"training_tasks": "both",
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"mask_ratio": [
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0.25,
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0.5,
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0.75
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],
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"trunc_by_sample": true,
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"vocab_path": "/scratch/ssd004/scratch/chloexq/scGPT_models/scGPT_human_model/vocab.json",
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"batch_size": 16,
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"local_rank": 0,
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"eval_batch_size": 32,
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"epochs": 6,
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"lr": 5e-05,
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"scheduler_interval": 100,
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"scheduler_factor": 0.99,
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"warmup_ratio_or_step": 10000.0,
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"no_cls": true,
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"no_cce": true,
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"no_impute": false,
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"no_decmoe": false,
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"impute_k": 6,
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"no_batch": false,
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"fp16": true,
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"fast_transformer": true,
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"nlayers": 12,
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"nheads": 8,
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"embsize": 512,
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"d_hid": 512,
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"dropout": 0.2,
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"n_layers_cls": 3,
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"log_interval": 3000,
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"save_interval": 9000,
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"mask_value": -1,
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"pad_value": -2
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}
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pretrained/best_model.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:1ce6a9eaa7cc199b23d404ea38203956d04699aaede42b6ea67aa0bf3a88c8be
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size 220124485
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pretrained/vocab.json
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The diff for this file is too large to render.
See raw diff
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