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GeneMamba

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GeneMamba

Commit History

Update examples/3_pretrain_from_scratch.py
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Remove duplicate examples/4_pretrain_from_scratch.py
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Upload train-from-scratch next-token example script
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Sync latest GeneMamba docs and next-token training updates
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mineself2016 commited on

Sync latest GeneMamba docs and next-token training updates
130ff93
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mineself2016 commited on

Sync latest GeneMamba docs and next-token training updates
1ff6b50
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mineself2016 commited on

Sync latest GeneMamba docs and next-token training updates
46332ab
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mineself2016 commited on

Sync latest GeneMamba docs and next-token training updates
ea25230
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mineself2016 commited on

Sync latest GeneMamba docs and next-token training updates
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mineself2016 commited on

Update Phase 3 to next-token train-from-scratch with checkpoint auto-resume
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Update Phase 3 to next-token train-from-scratch with checkpoint auto-resume
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Remove continue pretraining example
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Use next-token training and checkpoint resume in train-from-scratch
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mineself2016 commited on

Use next-token training and checkpoint resume in train-from-scratch
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Update continue pretraining docs and tokenizer details
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Update continue pretraining docs and tokenizer details
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Sync README model card from project root
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Fix ModelOutput dataclass defaults
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Set legacy checkpoint mamba_mode to mean
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Align to Mamba2 checkpoint keys and config
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Normalize config and fix Mamba2 loading
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Fix Mamba2 loading mismatch and sync model definition files
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Add GitHub dataset source link in README
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Add model card YAML metadata
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Remove stale file: tokenizer_assets/symbol2id.pkl
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Remove stale file: tokenizer_assets/id2symbol.pkl
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Remove stale file: tokenizer_assets/gene_tokenizer.json
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Remove stale file: examples/README.md
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Remove stale file: examples/21_pretrain_from_scratch_reference.py
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Remove stale file: examples/20_continue_pretraining_reference.py
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Remove stale file: examples/12_batch_integration_eval.py
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Remove stale file: examples/11_zero_shot_logreg.py
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Remove stale file: examples/10_finetune_classification.py
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Remove stale file: examples/01_extract_embeddings.py
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Remove stale file: examples/00_preprocess_to_input_ids.py
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Remove stale file: 48l-768d/tokenizer_config.json
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Remove stale file: 48l-768d/tokenizer.json
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Remove stale file: 48l-768d/special_tokens_map.json
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Remove stale file: 48l-768d/modeling_outputs.py
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Remove stale file: 48l-768d/modeling_genemamba.py
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Remove stale file: 48l-768d/model.safetensors
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Remove stale file: 48l-768d/configuration_genemamba.py
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Remove stale file: 48l-768d/config.json
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Remove stale file: 48l-512d/tokenizer_config.json
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Remove stale file: 48l-512d/tokenizer.json
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Remove stale file: 48l-512d/special_tokens_map.json
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mineself2016 commited on

Remove stale file: 48l-512d/modeling_outputs.py
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mineself2016 commited on

Remove stale file: 48l-512d/modeling_genemamba.py
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Remove stale file: 48l-512d/model.safetensors
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Remove stale file: 48l-512d/configuration_genemamba.py
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