#!/usr/bin/env python3 import sys import os sys.path.append(os.path.join(os.path.dirname(__file__), '..', 'src')) import pandas as pd from sklearn.model_selection import train_test_split from ohca_training_pipeline import prepare_training_data, train_ohca_model, find_optimal_threshold, save_model_with_metadata def train_from_labeled_data(data_path, model_save_path="./trained_ohca_model", test_size=0.2, num_epochs=3): print("OHCA Classifier Training from Pre-labeled Data") print("="*50) # Load data print(f"Loading labeled data from: {data_path}") df = pd.read_csv(data_path) # Add subject_id if missing if 'subject_id' not in df.columns: print("Adding subject_id column (using hadm_id as patient ID)") df['subject_id'] = df['hadm_id'] print(f"Data loaded: {len(df)} cases ({(df['ohca_label']==1).sum()} OHCA, {(df['ohca_label']==0).sum()} non-OHCA)") # Split data train_df, val_df = train_test_split(df, test_size=test_size, stratify=df['ohca_label'], random_state=42) print(f"Training: {len(train_df)}, Validation: {len(val_df)}") # Save temporary files train_df.to_excel('temp_train.xlsx', index=False) val_df.to_excel('temp_val.xlsx', index=False) try: # Train print("Preparing training data...") train_dataset, val_dataset, train_df_balanced, val_df_clean, tokenizer = prepare_training_data('temp_train.xlsx', 'temp_val.xlsx') print(f"Training model for {num_epochs} epochs...") model, trained_tokenizer = train_ohca_model( train_dataset, val_dataset, train_df_balanced, tokenizer, num_epochs=num_epochs, save_path=model_save_path ) print("Finding optimal threshold...") optimal_threshold, val_metrics = find_optimal_threshold(model, trained_tokenizer, val_df_clean) print("Saving model with metadata...") test_metrics = {'message': 'Trained on user data', 'test_set_size': 0} save_model_with_metadata(model, trained_tokenizer, optimal_threshold, val_metrics, test_metrics, model_save_path) print(f"Training completed!") print(f"Model saved to: {model_save_path}") print(f"Optimal threshold: {optimal_threshold:.3f}") print(f"F1-score: {val_metrics['f1_score']:.3f}") finally: # Clean up if os.path.exists('temp_train.xlsx'): os.remove('temp_train.xlsx') if os.path.exists('temp_val.xlsx'): os.remove('temp_val.xlsx') if __name__ == "__main__": import argparse parser = argparse.ArgumentParser() parser.add_argument('data_path', help='Path to labeled CSV file') parser.add_argument('--model_path', default='./trained_ohca_model', help='Model save path') parser.add_argument('--epochs', type=int, default=3, help='Training epochs') parser.add_argument('--test_size', type=float, default=0.2, help='Validation split') args = parser.parse_args() train_from_labeled_data(args.data_path, args.model_path, args.test_size, args.epochs)