End of training
Browse files- README.md +64 -0
- adapter_config.json +29 -0
- adapter_model.safetensors +3 -0
- added_tokens.json +3 -0
- merges.txt +1 -0
- special_tokens_map.json +6 -0
- tokenizer.json +105 -0
- tokenizer_config.json +45 -0
- training_args.bin +3 -0
- vocab.json +1 -0
README.md
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---
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library_name: peft
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license: bsd-3-clause
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base_model: hugohrban/progen2-base
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tags:
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- generated_from_trainer
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model-index:
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- name: Progen2_Kinase_PhosphositeGen_dkz_traindata_250step
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results: []
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---
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You
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should probably proofread and complete it, then remove this comment. -->
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# Progen2_Kinase_PhosphositeGen_dkz_traindata_250step
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This model is a fine-tuned version of [hugohrban/progen2-base](https://huggingface.co/hugohrban/progen2-base) on the None dataset.
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It achieves the following results on the evaluation set:
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- Loss: 2.0437
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- Perplexity: 7.7194
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## Model description
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More information needed
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## Intended uses & limitations
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More information needed
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## Training and evaluation data
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More information needed
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## Training procedure
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### Training hyperparameters
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The following hyperparameters were used during training:
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- learning_rate: 0.0005
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- train_batch_size: 8
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- eval_batch_size: 8
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- seed: 42
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- gradient_accumulation_steps: 4
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- total_train_batch_size: 32
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- optimizer: Use adamw_torch with betas=(0.9,0.999) and epsilon=1e-08 and optimizer_args=No additional optimizer arguments
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- lr_scheduler_type: cosine_with_restarts
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- lr_scheduler_warmup_ratio: 0.1
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- training_steps: 250
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### Training results
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| Training Loss | Epoch | Step | Validation Loss | Perplexity |
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|:-------------:|:------:|:----:|:---------------:|:----------:|
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| 9.8555 | 0.2793 | 100 | 2.1451 | 8.5432 |
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| 8.5245 | 0.5587 | 200 | 2.0437 | 7.7194 |
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### Framework versions
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- PEFT 0.13.2
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- Transformers 4.47.1
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- Pytorch 2.1.0.post301
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- Datasets 3.0.2
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- Tokenizers 0.21.0
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adapter_config.json
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{
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"alpha_pattern": {},
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"auto_mapping": null,
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"base_model_name_or_path": "hugohrban/progen2-base",
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"bias": "none",
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"fan_in_fan_out": false,
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"inference_mode": true,
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"init_lora_weights": true,
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"layer_replication": null,
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"layers_pattern": null,
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"layers_to_transform": null,
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"loftq_config": {},
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"lora_alpha": 128,
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"lora_dropout": 0.15,
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"megatron_config": null,
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"megatron_core": "megatron.core",
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"modules_to_save": null,
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"peft_type": "LORA",
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"r": 128,
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"rank_pattern": {},
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"revision": null,
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"target_modules": [
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"qkv_proj",
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"out_proj"
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],
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"task_type": "CAUSAL_LM",
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"use_dora": false,
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"use_rslora": false
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}
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adapter_model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:ac27d426ff281b20790561cd0c60496a467da0cb8765052a5a0887a33904dd4d
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size 127416480
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added_tokens.json
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{
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"<|endoftext|>": 30
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}
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merges.txt
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#version: 0.2
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special_tokens_map.json
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{
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"bos_token": "<|endoftext|>",
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"eos_token": "<|endoftext|>",
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"pad_token": "<|pad|>",
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"unk_token": "<|endoftext|>"
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}
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tokenizer.json
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{
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"version": "1.0",
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"truncation": null,
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"padding": null,
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"added_tokens": [
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{
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"id": 0,
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"content": "<|pad|>",
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"single_word": false,
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"lstrip": false,
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"rstrip": false,
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"normalized": false,
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"special": true
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},
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{
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"id": 1,
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"content": "<|bos|>",
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"single_word": false,
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"lstrip": false,
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"rstrip": false,
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"normalized": false,
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"special": true
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},
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{
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"id": 2,
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"content": "<|eos|>",
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"single_word": false,
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| 28 |
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"lstrip": false,
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| 29 |
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"rstrip": false,
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| 30 |
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"normalized": false,
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"special": true
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},
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{
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"id": 30,
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"content": "<|endoftext|>",
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"single_word": false,
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"lstrip": false,
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"rstrip": false,
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| 39 |
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"normalized": false,
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| 40 |
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"special": true
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| 41 |
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}
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],
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"normalizer": null,
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| 44 |
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"pre_tokenizer": {
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| 45 |
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"type": "ByteLevel",
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| 46 |
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"add_prefix_space": false,
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| 47 |
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"trim_offsets": true,
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| 48 |
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"use_regex": true
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| 49 |
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},
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| 50 |
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"post_processor": {
|
| 51 |
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"type": "ByteLevel",
|
| 52 |
+
"add_prefix_space": true,
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| 53 |
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"trim_offsets": true,
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| 54 |
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"use_regex": true
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| 55 |
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},
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| 56 |
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"decoder": {
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| 57 |
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"type": "ByteLevel",
|
| 58 |
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"add_prefix_space": true,
|
| 59 |
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"trim_offsets": true,
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| 60 |
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"use_regex": true
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| 61 |
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},
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| 62 |
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"model": {
|
| 63 |
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"type": "BPE",
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| 64 |
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"dropout": null,
|
| 65 |
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"unk_token": null,
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| 66 |
+
"continuing_subword_prefix": null,
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| 67 |
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"end_of_word_suffix": null,
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| 68 |
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"fuse_unk": false,
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| 69 |
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"byte_fallback": false,
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| 70 |
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"ignore_merges": false,
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| 71 |
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"vocab": {
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| 72 |
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"<|pad|>": 0,
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| 73 |
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"<|bos|>": 1,
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| 74 |
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"<|eos|>": 2,
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| 75 |
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"1": 3,
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| 76 |
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"2": 4,
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| 77 |
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"A": 5,
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| 78 |
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"B": 6,
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| 79 |
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"C": 7,
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| 80 |
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"D": 8,
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| 81 |
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"E": 9,
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| 82 |
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"F": 10,
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"G": 11,
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"H": 12,
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| 85 |
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"I": 13,
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| 86 |
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"K": 14,
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| 87 |
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"L": 15,
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| 88 |
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"M": 16,
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| 89 |
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"N": 17,
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| 90 |
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"O": 18,
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| 91 |
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"P": 19,
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| 92 |
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"Q": 20,
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| 93 |
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"R": 21,
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| 94 |
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"S": 22,
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| 95 |
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"T": 23,
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| 96 |
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"U": 24,
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| 97 |
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"V": 25,
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"W": 26,
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| 99 |
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"X": 27,
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| 100 |
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"Y": 28,
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"Z": 29
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},
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"merges": []
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}
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}
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tokenizer_config.json
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{
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"add_prefix_space": false,
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"added_tokens_decoder": {
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"0": {
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| 5 |
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"content": "<|pad|>",
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| 6 |
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"lstrip": false,
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| 7 |
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"normalized": false,
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| 8 |
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"rstrip": false,
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| 9 |
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"single_word": false,
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"special": true
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},
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"1": {
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| 13 |
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"content": "<|bos|>",
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"lstrip": false,
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"normalized": false,
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| 16 |
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"rstrip": false,
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| 17 |
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"single_word": false,
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| 18 |
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"special": true
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| 19 |
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},
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| 20 |
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"2": {
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| 21 |
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"content": "<|eos|>",
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| 22 |
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"lstrip": false,
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| 23 |
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"normalized": false,
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| 24 |
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"rstrip": false,
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| 25 |
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"single_word": false,
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| 26 |
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"special": true
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| 27 |
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},
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| 28 |
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"30": {
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| 29 |
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"content": "<|endoftext|>",
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| 30 |
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"lstrip": false,
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| 31 |
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"normalized": false,
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| 32 |
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"rstrip": false,
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| 33 |
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"single_word": false,
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| 34 |
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"special": true
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| 35 |
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}
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| 36 |
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},
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| 37 |
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"bos_token": "<|endoftext|>",
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| 38 |
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"clean_up_tokenization_spaces": false,
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| 39 |
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"eos_token": "<|endoftext|>",
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| 40 |
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"extra_special_tokens": {},
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| 41 |
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"model_max_length": 1000000000000000019884624838656,
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| 42 |
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"pad_token": "<|pad|>",
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| 43 |
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"tokenizer_class": "GPT2Tokenizer",
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| 44 |
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"unk_token": "<|endoftext|>"
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| 45 |
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}
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training_args.bin
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version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:f90c59d355e35623f5f92a4c976b1df8f0d61f8a490c19c2675728d04626dcf5
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size 5432
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vocab.json
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{"<|pad|>":0,"<|bos|>":1,"<|eos|>":2,"1":3,"2":4,"A":5,"B":6,"C":7,"D":8,"E":9,"F":10,"G":11,"H":12,"I":13,"K":14,"L":15,"M":16,"N":17,"O":18,"P":19,"Q":20,"R":21,"S":22,"T":23,"U":24,"V":25,"W":26,"X":27,"Y":28,"Z":29}
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