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Delete Finetune-species/super_binary_out/EXC

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  1. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-14000/config.json +0 -27
  2. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-14000/model.safetensors +0 -3
  3. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-14000/optimizer.pt +0 -3
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  5. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-14000/scheduler.pt +0 -3
  6. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-14000/special_tokens_map.json +0 -7
  7. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-14000/tokenizer.json +0 -0
  8. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-14000/tokenizer_config.json +0 -56
  9. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-14000/trainer_state.json +0 -110
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  11. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-16000/config.json +0 -27
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  15. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-16000/scheduler.pt +0 -3
  16. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-16000/special_tokens_map.json +0 -7
  17. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-16000/tokenizer.json +0 -0
  18. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-16000/tokenizer_config.json +0 -56
  19. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-16000/trainer_state.json +0 -123
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  21. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-18000/config.json +0 -27
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  25. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-18000/scheduler.pt +0 -3
  26. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-18000/special_tokens_map.json +0 -7
  27. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-18000/tokenizer.json +0 -0
  28. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-18000/tokenizer_config.json +0 -56
  29. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-18000/trainer_state.json +0 -136
  30. Finetune-species/super_binary_out/EXC/base_3072/1e-5/checkpoint-18000/training_args.bin +0 -3
  31. Finetune-species/super_binary_out/EXC/base_3072/1e-5/results/hg38_base_3072_binary_EXC_1e-5_seed42/eval_results.json +0 -1
  32. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-14000/config.json +0 -27
  33. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-14000/model.safetensors +0 -3
  34. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-14000/optimizer.pt +0 -3
  35. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-14000/rng_state.pth +0 -3
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  37. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-14000/special_tokens_map.json +0 -7
  38. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-14000/tokenizer.json +0 -0
  39. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-14000/tokenizer_config.json +0 -56
  40. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-14000/trainer_state.json +0 -110
  41. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-14000/training_args.bin +0 -3
  42. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-16000/config.json +0 -27
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  46. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-16000/scheduler.pt +0 -3
  47. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-16000/special_tokens_map.json +0 -7
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  49. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-16000/tokenizer_config.json +0 -56
  50. Finetune-species/super_binary_out/EXC/base_4096/1e-5/checkpoint-16000/trainer_state.json +0 -123
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