|
|
| Tokenizing with DNAbert2... |
| promoter: 12,334,449 tokens |
| enhancer: 81,613,472 tokens |
| exon: 39,014,803 tokens |
| random: 32,378,182 tokens |
|
|
| Tokenizing with Grover... |
| promoter: 15,845,529 tokens |
| enhancer: 102,460,422 tokens |
| exon: 49,411,407 tokens |
| random: 41,049,736 tokens |
|
|
| Tokenizing with cCRE_region_BPE... |
| promoter: 12,016,320 tokens |
| enhancer: 77,428,659 tokens |
| exon: 37,654,355 tokens |
| random: 31,601,798 tokens |
|
|
| Tokenizing with motif_region_BPE... |
| promoter: 13,091,114 tokens |
| enhancer: 83,353,540 tokens |
| exon: 40,627,217 tokens |
| random: 33,666,692 tokens |
|
|
| Tokenizing with DNAMotifTokenizer... |
| promoter: 19,543,735 tokens |
| enhancer: 126,777,588 tokens |
| exon: 61,613,820 tokens |
| random: 52,419,078 tokens |
|
|
| Saved matrix: /data/n5huang/dna_token/enrichment_analysis/js_vs_random_matrix.csv |
| promoter enhancer exon |
| DNAbert2 0.2700 0.1530 0.1658 |
| Grover 0.2465 0.1292 0.1440 |
| cCRE_region_BPE 0.2677 0.1527 0.1705 |
| motif_region_BPE 0.2575 0.1444 0.1626 |
| DNAMotifTokenizer 0.2047 0.1049 0.1227 |
| Saved: /data/n5huang/dna_token/enrichment_analysis/js_vs_random_heatmap.pdf |
| Saved: /data/n5huang/dna_token/enrichment_analysis/js_vs_random_heatmap.png |
|
|
