Training in progress, epoch 1

config.json

@@ -0,0 +1,217 @@
+{
+  "_name_or_path": "michiyasunaga/BioLinkBERT-base",
+  "architectures": [
+    "BertForSequenceClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "classifier_dropout": null,
+  "gradient_checkpointing": false,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "id2label": {
+    "0": "END",
+    "1": "access_of",
+    "2": "associated_procedure_of",
+    "3": "associated_with",
+    "4": "belongs_to_drug_super-family",
+    "5": "belongs_to_the_category_of",
+    "6": "belongs_to_the_drug_family_of",
+    "7": "cause_of",
+    "8": "characterized_by",
+    "9": "concentration_strength_denominator_unit_of",
+    "10": "concentration_strength_numerator_unit_of",
+    "11": "count_of_base_of_active_ingredient_of",
+    "12": "direct_device_of",
+    "13": "direct_procedure_site_of",
+    "14": "direct_site_of",
+    "15": "direct_substance_of",
+    "16": "disposition_of",
+    "17": "during",
+    "18": "finding_method_of",
+    "19": "finding_site_of",
+    "20": "has_active_ingredient",
+    "21": "has_associated_finding",
+    "22": "has_associated_morphology",
+    "23": "has_basis_of_strength_substance",
+    "24": "has_causative_agent",
+    "25": "has_clinical_course",
+    "26": "has_component",
+    "27": "has_concentration_strength_denominator_value",
+    "28": "has_concentration_strength_numerator_value",
+    "29": "has_direct_morphology",
+    "30": "has_dose_form",
+    "31": "has_finding_context",
+    "32": "has_focus",
+    "33": "has_indirect_morphology",
+    "34": "has_inherent_attribute",
+    "35": "has_intent",
+    "36": "has_occurrence",
+    "37": "has_pathological_process",
+    "38": "has_precise_active_ingredient",
+    "39": "has_presentation_strength_denominator_unit",
+    "40": "has_presentation_strength_denominator_value",
+    "41": "has_presentation_strength_numerator_unit",
+    "42": "has_procedure_device",
+    "43": "has_property",
+    "44": "has_realization",
+    "45": "has_revision_status",
+    "46": "has_route_of_administration",
+    "47": "has_severity",
+    "48": "has_specimen",
+    "49": "has_specimen_procedure",
+    "50": "has_specimen_source_morphology",
+    "51": "has_specimen_source_topography",
+    "52": "has_specimen_substance",
+    "53": "has_time_aspect",
+    "54": "indirect_device_of",
+    "55": "indirect_procedure_site_of",
+    "56": "interacts_with",
+    "57": "interpretation_of",
+    "58": "interprets",
+    "59": "is_a_category",
+    "60": "is_a_risk_factor_of",
+    "61": "is_a_subtype_of",
+    "62": "is_a_vector_for",
+    "63": "is_an_ingradient_of",
+    "64": "is_associated_with",
+    "65": "is_modification_of",
+    "66": "isa",
+    "67": "may_be_allelic_with",
+    "68": "may_cause",
+    "69": "may_contraindicate",
+    "70": "may_treat",
+    "71": "measurement_method_of",
+    "72": "method_of",
+    "73": "occurs_after",
+    "74": "part_anatomy_structure_of",
+    "75": "possibly_equivalent_to",
+    "76": "presentation_strength_numerator_value_of",
+    "77": "priority_of",
+    "78": "procedure_context_of",
+    "79": "procedure_morphology_of",
+    "80": "procedure_site_of",
+    "81": "referred_to_by",
+    "82": "same_as",
+    "83": "see_also",
+    "84": "specimen_source_identity_of",
+    "85": "substance_used_by",
+    "86": "surgical_approach_of",
+    "87": "temporal_context_of",
+    "88": "temporally_related_to",
+    "89": "unit_of_presentation_of",
+    "90": "uses_access_device",
+    "91": "uses_device",
+    "92": "was_a"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "label2id": {
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+    "access_of": 1,
+    "associated_procedure_of": 2,
+    "associated_with": 3,
+    "belongs_to_drug_super-family": 4,
+    "belongs_to_the_category_of": 5,
+    "belongs_to_the_drug_family_of": 6,
+    "cause_of": 7,
+    "characterized_by": 8,
+    "concentration_strength_denominator_unit_of": 9,
+    "concentration_strength_numerator_unit_of": 10,
+    "count_of_base_of_active_ingredient_of": 11,
+    "direct_device_of": 12,
+    "direct_procedure_site_of": 13,
+    "direct_site_of": 14,
+    "direct_substance_of": 15,
+    "disposition_of": 16,
+    "during": 17,
+    "finding_method_of": 18,
+    "finding_site_of": 19,
+    "has_active_ingredient": 20,
+    "has_associated_finding": 21,
+    "has_associated_morphology": 22,
+    "has_basis_of_strength_substance": 23,
+    "has_causative_agent": 24,
+    "has_clinical_course": 25,
+    "has_component": 26,
+    "has_concentration_strength_denominator_value": 27,
+    "has_concentration_strength_numerator_value": 28,
+    "has_direct_morphology": 29,
+    "has_dose_form": 30,
+    "has_finding_context": 31,
+    "has_focus": 32,
+    "has_indirect_morphology": 33,
+    "has_inherent_attribute": 34,
+    "has_intent": 35,
+    "has_occurrence": 36,
+    "has_pathological_process": 37,
+    "has_precise_active_ingredient": 38,
+    "has_presentation_strength_denominator_unit": 39,
+    "has_presentation_strength_denominator_value": 40,
+    "has_presentation_strength_numerator_unit": 41,
+    "has_procedure_device": 42,
+    "has_property": 43,
+    "has_realization": 44,
+    "has_revision_status": 45,
+    "has_route_of_administration": 46,
+    "has_severity": 47,
+    "has_specimen": 48,
+    "has_specimen_procedure": 49,
+    "has_specimen_source_morphology": 50,
+    "has_specimen_source_topography": 51,
+    "has_specimen_substance": 52,
+    "has_time_aspect": 53,
+    "indirect_device_of": 54,
+    "indirect_procedure_site_of": 55,
+    "interacts_with": 56,
+    "interpretation_of": 57,
+    "interprets": 58,
+    "is_a_category": 59,
+    "is_a_risk_factor_of": 60,
+    "is_a_subtype_of": 61,
+    "is_a_vector_for": 62,
+    "is_an_ingradient_of": 63,
+    "is_associated_with": 64,
+    "is_modification_of": 65,
+    "isa": 66,
+    "may_be_allelic_with": 67,
+    "may_cause": 68,
+    "may_contraindicate": 69,
+    "may_treat": 70,
+    "measurement_method_of": 71,
+    "method_of": 72,
+    "occurs_after": 73,
+    "part_anatomy_structure_of": 74,
+    "possibly_equivalent_to": 75,
+    "presentation_strength_numerator_value_of": 76,
+    "priority_of": 77,
+    "procedure_context_of": 78,
+    "procedure_morphology_of": 79,
+    "procedure_site_of": 80,
+    "referred_to_by": 81,
+    "same_as": 82,
+    "see_also": 83,
+    "specimen_source_identity_of": 84,
+    "substance_used_by": 85,
+    "surgical_approach_of": 86,
+    "temporal_context_of": 87,
+    "temporally_related_to": 88,
+    "unit_of_presentation_of": 89,
+    "uses_access_device": 90,
+    "uses_device": 91,
+    "was_a": 92
+  },
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "problem_type": "single_label_classification",
+  "torch_dtype": "float32",
+  "transformers_version": "4.39.0.dev0",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 28895
+}

model.safetensors

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+oid sha256:8417fcad566810880e1161af39d5392d7f109312cc77c593d33a0fd5f707e8c8
+size 433240404

special_tokens_map.json

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+{
+  "cls_token": {
+    "content": "[CLS]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
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+  "mask_token": {
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+    "lstrip": false,
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+  "pad_token": {
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+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
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+  "sep_token": {
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+    "rstrip": false,
+    "single_word": false
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+  "unk_token": {
+    "content": "[UNK]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  }
+}

tokenizer_config.json

@@ -0,0 +1,57 @@
+{
+  "added_tokens_decoder": {
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+      "content": "[PAD]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
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+      "special": true
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+      "single_word": false,
+      "special": true
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+  "clean_up_tokenization_spaces": true,
+  "cls_token": "[CLS]",
+  "do_basic_tokenize": true,
+  "do_lower_case": true,
+  "mask_token": "[MASK]",
+  "model_max_length": 1000000000000000019884624838656,
+  "never_split": null,
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "strip_accents": null,
+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "BertTokenizer",
+  "unk_token": "[UNK]"
+}

training_args.bin

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