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README.md
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## Limitations
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ProkBERT PhaStyle is specifically designed for **binary classification** of phage lifestyles (virulent vs. temperate) and does not handle non-phage sequences. It is recommended to use this model in conjunction with upstream pipelines that identify phage sequences. For large-scale inference, **GPU support** is strongly advised.
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## Limitations
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ProkBERT PhaStyle is specifically designed for **binary classification** of phage lifestyles (virulent vs. temperate) and does not handle non-phage sequences. It is recommended to use this model in conjunction with upstream pipelines that identify phage sequences. For large-scale inference, **GPU support** is strongly advised.
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# Citing this work
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If you use the data in this package, please cite:
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```bibtex
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@Article{ProkBERT2024,
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author = {Ligeti, Balázs and Szepesi-Nagy, István and Bodnár, Babett and Ligeti-Nagy, Noémi and Juhász, János},
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journal = {Frontiers in Microbiology},
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title = {{ProkBERT} family: genomic language models for microbiome applications},
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year = {2024},
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volume = {14},
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URL={https://www.frontiersin.org/articles/10.3389/fmicb.2023.1331233},
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DOI={10.3389/fmicb.2023.1331233},
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ISSN={1664-302X}
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}
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```
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