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FCLp-subsc-FCLa-INSULA_left/name17-43-58_232/.hydra/config.yaml ADDED
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+ data: ${oc.dict.values:dataset}
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+ datakey: ${oc.dict.keys:dataset}
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+ apply_augmentations: true
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+ random_choice: false
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+ mixed: true
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+ foldlabel: false
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+ trimdepth: false
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+ uniform_trim: false
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+ binary_trim: true
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+ binary_proba_trim: 0.5
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+ max_distance: 100
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+ trimdepth_delta: 141
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+ proba_trimedges: 0.5
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+ proba_pepper_trimedges: 0.5
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+ proba_pepper_trimdepth: 1.0
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+ ball_radius: 2
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+ fill_value: 0
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+ max_translation: 1
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+ proba_translation: 1
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+ keep_extremity: bottom
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+ keep_extremity_trimdepth: top
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+ patch_size_cutout:
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+ - 5
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+ - 30
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+ patch_size_cutin:
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+ - 20
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+ - 90
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+ keep_proba_per_branch_cutout: 0.5
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+ keep_proba_global_cutout: 1.0
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+ keep_proba_per_branch_cutin: 0.5
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+ keep_proba_global_cutin: 1.0
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+ mask_constraint: true
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+ offset_proba_no_augm: 0.0
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+ proba_trimdepth: 0.0
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+ proba_trimextremities: 0.0
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+ redefine_bottom: true
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+ max_angle: 18
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+ backbone_name: convnet
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+ encoder_depth: 3
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+ filters:
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+ - 32
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+ - 64
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+ - 128
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+ initial_kernel_size: 7
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+ initial_stride: 1
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+ max_pool: false
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+ block_depth: 4
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+ backbone_output_size: 32
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+ adaptive_pooling: null
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+ projection_head_hidden_layers: null
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+ classifier_name: svm
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+ training_embeddings: /neurospin/dico/data/deep_folding/current/datasets/schiz/morphometry_statistics/F.C.M.ant/shape_embs.csv
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+ results_save_path: null
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+ labels_of_interest: null
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+ class_max_epochs: 1000
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+ n_repeat: 5
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+ classifier_seed: 24
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+ classifier_test_size: 0.2
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+ model_path: /neurospin/dico/agaudin/Runs/04_pointnet/Output/2022-10-07/09-22-42_1
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+ embeddings_save_path: /neurospin/dico/data/deep_folding/current/datasets/schiz/crops/2mm/CINGULATE/mask/pca/embeddings
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+ pca_Xfit: /neurospin/dico/data/deep_folding/current/datasets/schiz/crops/2mm/CINGULATE/mask/pca/fit_Lskeleton.npy
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+ pca_Xtransform: /neurospin/dico/data/deep_folding/current/datasets/schiz/crops/2mm/CINGULATE/mask/pca/transform_Lskeleton.npy
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+ n_pca: 10
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+ output_dir: /lustre/fswork/projects/rech/tgu/uic67me/Runs/Champollion/Output/all_regions/1_V1
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+ sweep_day: ${now:%Y-%m-%d}
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+ suffix_dir: ''
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+ sweep_dir: ${output_dir}/${sweep_day}${suffix_dir}
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+ run_time: ${now:%H-%M-%S}
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+ checkpoint_dir: output_dir
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+ label_names:
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+ - Left_OFC
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+ label_type: multiclass
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+ test: false
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+ mode: encoder
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+ contrastive_model: BarlowTwins
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+ proportion_pure_contrastive: 1.0
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+ temperature_initial: 0.1
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+ temperature: 0.1
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+ temperature_supervised: 0.3
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+ pin_mem: true
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+ lr: 0.0004
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+ weight_decay: 5.0e-05
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+ nb_epochs_per_tSNE: -1
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+ nb_epochs_per_weight_save: 10
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+ nb_steps_per_flush_logs: 1
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+ checking: false
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+ save_views: true
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+ wandb:
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+ grid_search: false
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+ entity: aymeric-gaudin
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+ project: 2023_brain_regions_grid_searches
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+ lambda_gs_crit: 2
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+ dataset_folder: /lustre/fswork/projects/rech/tgu/umy22uu/Runs/70_self-supervised_two-regions/Input
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+ dataset:
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+ FCLp-subsc-FCLa-INSULA_left:
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+ dataset_name: FCLp-subsc-FCLa-INSULA_left
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+ pickle_normal: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Lskeleton.pkl
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+ numpy_all: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Lskeleton.npy
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+ subjects_all: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Lskeleton_subject.csv
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+ crop_dir: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Lcrops
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+ foldlabel_dir: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Llabels
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+ foldlabel_all: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Llabel.npy
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+ subjects_foldlabel_all: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Llabel_subject.csv
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+ distbottom_dir: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Ldistbottom
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+ distbottom_all: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Ldistbottom.npy
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+ extremity_dir: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Lextremities
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+ extremity_all: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Lextremities.npy
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+ subjects_extremity_all: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Lextremities_subject.csv
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+ subjects_distbottom_all: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Ldistbottom_subject.csv
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+ crop_file_suffix: _cropped_skeleton.nii.gz
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+ pickle_benchmark: null
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+ train_val_csv_file: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Lskeleton_subject.csv
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+ subject_labels_file: ${dataset_folder}/UkBioBank40/participants_sex_age.csv
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+ subject_column_name: Subject
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+ cutout_mask_path: null
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+ cutin_mask_path: ${dataset_folder}/UkBioBank40/crops/2mm/F.C.L.p.-subsc.-F.C.L.a.-INSULA./mask/Lmask.npy
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+ flip_dataset: false
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+ input_size: (1, 35, 52, 51)
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+ data: ${oc.dict.values:dataset}
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+ datakey: ${oc.dict.keys:dataset}
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+ apply_augmentations: true
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+ embeddings_save_path: /neurospin/dico/data/deep_folding/current/datasets/schiz/crops/2mm/CINGULATE/mask/pca/embeddings
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+ pca_Xtransform: /neurospin/dico/data/deep_folding/current/datasets/schiz/crops/2mm/CINGULATE/mask/pca/transform_Lskeleton.npy
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+ n_pca: 10
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+ sweep_day: ${now:%Y-%m-%d}
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+ suffix_dir: ''
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+ run_time: ${now:%H-%M-%S}
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+ checkpoint_dir: output_dir
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+ label_names:
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+ - Left_OFC
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+ label_type: multiclass
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+ nb_classes: 4
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+ test: false
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+ mode: encoder
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+ contrastive_model: BarlowTwins
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+ BT_correlation: cross
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+ with_labels: false
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+ proportion_pure_contrastive: 1.0
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+ temperature_initial: 0.1
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+ temperature: 0.1
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+ temperature_supervised: 0.3
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+ lambda_BT: 2.56
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+ lambda_VR: 2.56
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+ epsilon_VR: 0.001
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+ model: SimCLR_fusion
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+ sigma_labels: 2.0
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+ sigma: 5
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+ drop_rate: 0.05
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+ lr: 0.0004
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+ nb_epochs_per_matrix_plot: 10
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+ nb_epochs_per_weight_save: 10
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+ nb_steps_per_flush_logs: 1
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+ log_every_n_steps: 2
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+ diff_auc_threshold: 0.4
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+ checkpoint_path: null
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+ analysis_path: null
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