Delete files fiji/fiji/Fiji.app/ with huggingface_hub

fiji/fiji/Fiji.app/Contents/Info.plist

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-<!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "https://www.apple.com/DTDs/PropertyList-1.0.dtd">
-<plist version="1.0">
-	<dict>
-		<key>CFBundleAllowMixedLocalizations</key>
-		<true/>
-		<key>CFBundleDevelopmentRegion</key>
-		<string>English</string>
-		<!--
-		<key>CFBundleDocumentTypes</key>
-		<array>
-			<dict>
-				<key>CFBundleTypeExtensions</key>
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-					<string>*</string>
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-				<string>Viewer</string>
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-				<false/>
-			</dict>
-		</array>
-		-->
-		<key>CFBundleExecutable</key>
-		<string>ImageJ-macosx</string> <!-- <string>fiji-macos-universal</string> -->
-		<key>CFBundleGetInfoString</key>
-		<string>Fiji for macOS</string>
-		<key>CFBundleIconFile</key>
-		<string>Fiji.icns</string>
-		<key>CFBundleIdentifier</key>
-		<string>sc.fiji</string>
-		<key>CFBundleInfoDictionaryVersion</key>
-		<string>6.0</string>
-		<key>CFBundleName</key>
-		<string>Fiji</string>
-		<key>CFBundlePackageType</key>
-		<string>APPL</string>
-		<!-- See https://developer.apple.com/app-store/categories/ for list of AppStore categories -->
-		<key>LSApplicationCategoryType</key>
-		<string>public.app-category.utilities</string>
-		<key>CFBundleVersion</key>
-		<string>1</string>
-		<key>NSHumanReadableCopyright</key>
-		<string>Copyright (C) 2024</string>
-		<key>NSHighResolutionCapable</key>
-		<string>true</string>
-		<!--
-			<key>NSPrincipalClass</key>
-			<string>NSApplication</string>
-		-->
-		<key>fiji</key>
-		<dict>
-			<key>memory</key>
-			<string>auto</string>
-			<key>system</key>
-			<string>0</string>
-			<key>allowMultiple</key>
-			<string>false</string>
-			<key>JVMOptions</key>
-			<string></string>
-			<key>DefaultArguments</key>
-			<string></string>
-		</dict>
-	</dict>
-</plist>

fiji/fiji/Fiji.app/Contents/MacOS/ImageJ-macosx

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fiji/fiji/Fiji.app/Contents/Resources/ImageJ.icns

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fiji/fiji/Fiji.app/README.md

@@ -1,121 +0,0 @@
-ImageJ2 is a new version of [ImageJ](http://imagej.net/) seeking to strengthen
-both the software and its community. Internally, it is a total redesign of
-ImageJ, but it is backwards compatible with ImageJ 1.x via a "legacy layer" and
-features a user interface closely modeled after the original.
-
-Under the hood, ImageJ2 completely isolates the image processing logic from the
-graphical user interface (UI), allowing ImageJ2 commands to be used in many
-contexts, including headless in the cloud or on a server such as
-[OMERO](http://openmicroscopy.org/site/support/omero4), or from within another
-application such as [KNIME](http://knime.org/),
-[Icy](http://icy.bioimageanalysis.org/) or
-[CellProfiler](http://cellprofiler.org/) (a Python application).
-
-ImageJ2 has an N-dimensional data model driven by the powerful
-[ImgLib2](http://imglib2.net/) library, which supports image data expressed in
-an extensible set of numeric and non-numeric types, and accessed from an
-extensible set of data sources. ImageJ2 is driven by a state-of-the-art,
-collaborative development process, including version control, unit testing,
-automated builds via a continuous integration system, a bug tracker and more.
-
-We are collaborating closely with related projects including
-[Fiji](http://fiji.sc/), [SCIFIO](http://scif.io/) and
-[OME](http://openmicroscopy.org/), and are striving to deliver a coherent
-software stack reusable throughout the life sciences community and beyond. For
-more details, see the [SciJava web site](http://scijava.org/).
-
-ImageJ2 is currently in the "beta" stage, meaning the code is not finished. It
-is being released for early community feedback and testing. Comments, questions
-and bug reports are much appreciated!
-
-To maintain ImageJ's continuity of development, we have modeled the application
-after ImageJ v1.x as much as is reasonable. However, please be aware that
-ImageJ2 is essentially a total rewrite of ImageJ from the ground up. It
-provides backward compatibility with older versions of ImageJ by bundling the
-latest v1.x code and translating between "legacy" and "modern" image
-structures.
-
-For more details on the project, see the [ImageJ web site](http://imagej.net/).
-
-
-LICENSING
----------
-
-ImageJ2 is distributed under a
-[Simplified BSD License](http://en.wikipedia.org/wiki/BSD_licenses);
-for the full text of the license, see
-[LICENSE.txt](https://github.com/imagej/imagej/blob/master/LICENSE.txt).
-
-For the list of developers and contributors, see
-[pom.xml](https://github.com/imagej/imagej/blob/master/pom.xml).
-
-
-IMAGEJ AS A LIBRARY
--------------------
-
-This repository is the master ImageJ application, which brings together all of
-ImageJ under the artifact
-[net.imagej:imagej](http://maven.imagej.net/index.html#nexus-search;gav~net.imagej~imagej~~~~kw,versionexpand).
-It is the easiest entry point if you are looking to use ImageJ as a library from
-your own software. E.g., in your Maven `pom.xml`:
-
-```
-<parent>
-  <groupId>net.imagej</groupId>
-  <artifactId>pom-imagej</artifactId>
-  <version>2.35</version>
-</parent>
-...
-<dependency>
-  <groupId>net.imagej</groupId>
-  <artifactId>imagej</artifactId>
-</dependency>
-```
-
-We recommend inheriting from the
-[pom-imagej](https://github.com/imagej/pom-imagej) parent, although it is not
-required. (If you do not, you will need to include the `<version>` of ImageJ in
-your `<dependency>` declaration.)
-
-
-DEPENDENCIES
-------------
-
-This component depends on other, lower level components, each of which lives in
-its own repository:
-
-* [ImageJ Common](https://github.com/imagej/imagej-common)
-* [ImageJ Legacy](https://github.com/imagej/imagej-legacy)
-* [ImageJ OPS](https://github.com/imagej/imagej-ops)
-* [ImageJ Updater](https://github.com/imagej/imagej-updater)
-* [ImgLib2](https://github.com/imglib/imglib)
-* [SCIFIO](https://github.com/scifio/scifio)
-* [SciJava Common](https://github.com/scijava/scijava-common)
-
-It also includes uses various "plugin" components at runtime:
-
-* [Imagej Plugins: Commands](https://github.com/imagej/imagej-plugins-commands)
-* [Imagej Plugins: Tools](https://github.com/imagej/imagej-plugins-tools)
-* [Imagej Plugins: Uploader: SSH](https://github.com/imagej/imagej-plugins-uploader-ssh)
-* [Imagej Plugins: Uploader: WebDAV](https://github.com/imagej/imagej-plugins-uploader-webdav)
-* [SciJava Plugins: Platforms](https://github.com/scijava/scijava-plugins-platforms)
-* [SciJava Plugins: Text: Markdown](https://github.com/scijava/scijava-plugins-text-markdown)
-* [SciJava Plugins: Text: Plain](https://github.com/scijava/scijava-plugins-text-plain)
-* [Scripting: Beanshell](https://github.com/scijava/scripting-beanshell)
-* [Scripting: Clojure](https://github.com/scijava/scripting-clojure)
-* [Scripting: Java](https://github.com/scijava/scripting-java)
-* [Scripting: JavaScript](https://github.com/scijava/scripting-javascript)
-* [Scripting: JRuby](https://github.com/scijava/scripting-jruby)
-* [Scripting: Jython](https://github.com/scijava/scripting-jython)
-
-See the [pom.xml](pom.xml) for a complete list of dependencies.
-
-
-BUGS
-----
-
-For a list of known issues, see the
-[issue tracking system](http://trac.imagej.net/report/1).
-
-Please report any bugs by following the [instructions
-online](http://imagej.net/Bugs).

fiji/fiji/Fiji.app/WELCOME.md

@@ -1,120 +0,0 @@
-# Welcome to ImageJ2!
-
-[ImageJ2](http://developer.imagej.net/about) is an effort to broaden the
-functionality of ImageJ beyond the limitations of ImageJ 1.x, to support the
-next generation of multidimensional scientific imaging.
-
-To ensure backwards compatibility, we designed ImageJ2 to fully integrate into
-the existing ImageJ user interface. This allows you to keep using ImageJ in
-familiar ways, while providing the ability to migrate toward more powerful new
-features as needed.
-
-The [Fiji](http://fiji.sc/) distribution of ImageJ has shipped with beta
-versions of ImageJ2 for quite some time, so you may already be familiar with
-some of ImageJ2's features -- some of which, such as the
-[Updater](http://wiki.imagej.net/Updater) and
-[Launcher](http://wiki.imagej.net/Launcher), were originally developed as part
-of Fiji.
-
-## Features of ImageJ2
-
-ImageJ2 provides a wealth of new features and capabilities:
-
-* The ImageJ Updater makes it simple to keep your ImageJ up to date, and to
-  add new plugins by enabling additional
-  [Update Sites](http://wiki.imagej.net/Update_Sites).
-* New and enhanced file format support via the SCIFIO library (see below).
-* More powerful [Script Editor](http://wiki.imagej.net/Script_Editor) with
-  support for several scripting languages.
-* New commands:
-    * `Plugins > Debug > Dump Stack` for debugging when things
-      [hang](https://en.wikipedia.org/wiki/Hang_(computing)).
-    * `Plugins > Debug > System Information` for reporting on versions of
-      installed plugins and libraries.
-* Use ImageJ2's N-dimensional [ImgLib2](http://wiki.imagej.net/ImgLib2)-based
-  data structures (still in beta).
-* Write parameterized commands and scripts:
-    * Typed inputs and outputs with no dependence on AWT user interface.
-    * Mix and match ImageJ 1.x and ImageJ2 data structures.
-    * Plugins appear in the menu automatically without plugins.config files.
-    * Reusable in many contexts: KNIME, CellProfiler, OMERO, headless...
-
-## ImageJ2 is more than just an application
-
-ImageJ2 is also a collection of reusable software libraries built on the
-[SciJava](http://www.scijava.org/) software stack, using a powerful plugin
-framework to facilitate rapid development and painless user customization.
-
-The following software component libraries form the core of ImageJ2:
-
-* [ImageJ Common](https://github.com/imagej/imagej-common) -
-  The core image data model, using ImgLib2.
-* [ImageJ OPS](https://github.com/imagej/imagej-ops) -
-  An extensible framework for reusable image processing algorithms.
-* [ImageJ Updater](https://github.com/imagej/imagej-updater) -
-  A mechanism to update individual plugins and libraries within ImageJ.
-* [ImageJ Legacy](https://github.com/imagej/imagej-legacy) -
-  Provides complete backwards compatibility with ImageJ 1.x.
-* [SciJava Common](https://github.com/scijava/scijava-common) -
-  The core frameworks for plugins, modules and the application itself.
-
-## Improved image I/O with the SCIFIO library
-
-ImageJ2 uses the [SCIFIO](http://wiki.imagej.net/SCIFIO) library (SCientific
-Image Format Input and Output) by default for most image input tasks. You can
-change this behavior at any time by running `Edit > Options > ImageJ2` and
-modifying the `Use SCIFIO when opening files` option.
-
-### Benefits of using SCIFIO
-
-SCIFIO is focused on robust and extensible support for reading and writing
-image file formats. Using it with ImageJ provides many advantages:
-
-* There is no need to call a special SCIFIO plugin; it works with commands like
-  `File > Open` automatically.
-* There are additional import options available via the `File > Import >
-  Image...` command.
-* There is a [Bio-Formats](http://fiji.sc/Bio-Formats) plugin for SCIFIO,
-  included with the [Fiji](http://fiji.sc/) distribution of ImageJ, that adds
-  automatic support for over a hundred life sciences file formats.
-* Additional SCIFIO file format plugins can be dropped into ImageJ and will
-  also work automatically.
-* Unlike the ImageJ 1.x TIFF implementation, SCIFIO's support for TIFF adheres
-  to the specification, allowing to successfully read many more sorts of TIFFs.
-* Similarly, SCIFIO supports more sorts of JPEG files since it uses its own
-  JPEG decoder.
-* SCIFIO also ships with support for several QuickTime codecs, allowing ImageJ
-  to read QuickTime MOV files even in 64-bit mode without QuickTime for Java.
-* SCIFIO supports many additional open file formats out of the box:
-    * animated GIF
-    * animated PNG
-    * encapsulated postscript (EPS)
-    * JPEG-2000
-    * Micro-Manager datasets
-    * Multi-image Network Graphics (MNG)
-    * Nearly Raw Raster Data (NRRD)
-    * Imspector OBF
-    * OME-TIFF (multidimensional rich metadata TIFF)
-    * OME-XML
-    * PCX
-    * PICT (even in 64-bit mode and/or without QuickTime for Java installed)
-* If SCIFIO cannot handle the image file, it falls back to ImageJ 1.x.
-* You can save to SCIFIO-supported file formats using the `File > Export >
-  Image...` command. Supported formats for export include:
-    * APNG
-    * AVI
-    * EPS
-    * ICS
-    * JPEG
-    * JPEG2000
-    * QuickTime
-    * TIFF
-
-### Current limitations of SCIFIO
-
-* SCIFIO is still in beta, so there is likely to be a higher incidence of bugs.
-  Issues can be reported on the
-  [SCIFIO issue tracker](https://github.com/scifio/scifio/issues).
-* Although we strive for full backwards compatibility, some files may appear
-  slightly different when opened.
-* Opening files with SCIFIO is not fully macro recordable yet.

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