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714cf46 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 | ALL_SUBSTITUTION_DMS_IDS = [
"A0A140D2T1_ZIKV_Sourisseau_2019",
"A0A192B1T2_9HIV1_Haddox_2018",
"A0A1I9GEU1_NEIME_Kennouche_2019",
"A0A247D711_LISMN_Stadelmann_2021",
"A0A2Z5U3Z0_9INFA_Doud_2016",
"A0A2Z5U3Z0_9INFA_Wu_2014",
"A4_HUMAN_Seuma_2022",
"A4D664_9INFA_Soh_2019",
"A4GRB6_PSEAI_Chen_2020",
"AACC1_PSEAI_Dandage_2018",
"ACE2_HUMAN_Chan_2020",
"ADRB2_HUMAN_Jones_2020",
"AICDA_HUMAN_Gajula_2014_3cycles",
"AMFR_HUMAN_Tsuboyama_2023_4G3O",
"AMIE_PSEAE_Wrenbeck_2017",
"ANCSZ_Hobbs_2022",
"ARGR_ECOLI_Tsuboyama_2023_1AOY",
"B2L11_HUMAN_Dutta_2010_binding-Mcl-1",
"BBC1_YEAST_Tsuboyama_2023_1TG0",
"BCHB_CHLTE_Tsuboyama_2023_2KRU",
"BLAT_ECOLX_Deng_2012",
"BLAT_ECOLX_Firnberg_2014",
"BLAT_ECOLX_Jacquier_2013",
"BLAT_ECOLX_Stiffler_2015",
"BRCA1_HUMAN_Findlay_2018",
"BRCA2_HUMAN_Erwood_2022_HEK293T",
"C6KNH7_9INFA_Lee_2018",
"CALM1_HUMAN_Weile_2017",
"CAPSD_AAV2S_Sinai_2021",
"CAR11_HUMAN_Meitlis_2020_gof",
"CAR11_HUMAN_Meitlis_2020_lof",
"CAS9_STRP1_Spencer_2017_positive",
"CASP3_HUMAN_Roychowdhury_2020",
"CASP7_HUMAN_Roychowdhury_2020",
"CATR_CHLRE_Tsuboyama_2023_2AMI",
"CBPA2_HUMAN_Tsuboyama_2023_1O6X",
"CBS_HUMAN_Sun_2020",
"CBX4_HUMAN_Tsuboyama_2023_2K28",
"CCDB_ECOLI_Adkar_2012",
"CCDB_ECOLI_Tripathi_2016",
"CCR5_HUMAN_Gill_2023",
"CD19_HUMAN_Klesmith_2019_FMC_singles",
"CP2C9_HUMAN_Amorosi_2021_abundance",
"CP2C9_HUMAN_Amorosi_2021_activity",
"CSN4_MOUSE_Tsuboyama_2023_1UFM",
"CUE1_YEAST_Tsuboyama_2023_2MYX",
"D7PM05_CLYGR_Somermeyer_2022",
"DLG4_HUMAN_Faure_2021",
"DLG4_RAT_McLaughlin_2012",
"DN7A_SACS2_Tsuboyama_2023_1JIC",
"DNJA1_HUMAN_Tsuboyama_2023_2LO1",
"DOCK1_MOUSE_Tsuboyama_2023_2M0Y",
"DYR_ECOLI_Nguyen_2023",
"DYR_ECOLI_Thompson_2019",
"ENV_HV1B9_DuenasDecamp_2016",
"ENV_HV1BR_Haddox_2016",
"ENVZ_ECOLI_Ghose_2023",
"EPHB2_HUMAN_Tsuboyama_2023_1F0M",
"ERBB2_HUMAN_Elazar_2016",
"ESTA_BACSU_Nutschel_2020",
"F7YBW8_MESOW_Ding_2023",
"F7YBW8_MESOW_Aakre_2015",
"FECA_ECOLI_Tsuboyama_2023_2D1U",
"FKBP3_HUMAN_Tsuboyama_2023_2KFV",
"GAL4_YEAST_Kitzman_2015",
"GCN4_YEAST_Staller_2018",
"GDIA_HUMAN_Silverstein_2021",
"GFP_AEQVI_Sarkisyan_2016",
"GLPA_HUMAN_Elazar_2016",
"GRB2_HUMAN_Faure_2021",
"HCP_LAMBD_Tsuboyama_2023_2L6Q",
"HECD1_HUMAN_Tsuboyama_2023_3DKM",
"HEM3_HUMAN_Loggerenberg_2023",
"HIS7_YEAST_Pokusaeva_2019",
"HMDH_HUMAN_Jiang_2019",
"HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2",
"HSP82_YEAST_Flynn_2019",
"HSP82_YEAST_Mishra_2016",
"HXK4_HUMAN_Gersing_2022_activity",
"HXK4_HUMAN_Gersing_2023_abundance",
"I6TAH8_I68A0_Doud_2015",
"IF1_ECOLI_Kelsic_2016",
"ILF3_HUMAN_Tsuboyama_2023_2L33",
"ISDH_STAAW_Tsuboyama_2023_2LHR",
"KCNE1_HUMAN_Muhammad_2023_expression",
"KCNE1_HUMAN_Muhammad_2023_function",
"KCNH2_HUMAN_Kozek_2020",
"KCNJ2_MOUSE_Coyote-Maestas_2022_function",
"KCNJ2_MOUSE_Coyote-Maestas_2022_surface",
"KKA2_KLEPN_Melnikov_2014",
"LGK_LIPST_Klesmith_2015",
"LYAM1_HUMAN_Elazar_2016",
"MAFG_MOUSE_Tsuboyama_2023_1K1V",
"MBD11_ARATH_Tsuboyama_2023_6ACV",
"MET_HUMAN_Estevam_2023",
"MK01_HUMAN_Brenan_2016",
"MLAC_ECOLI_MacRae_2023",
"MSH2_HUMAN_Jia_2020",
"MTH3_HAEAE_RockahShmuel_2015",
"MTHR_HUMAN_Weile_2021",
"MYO3_YEAST_Tsuboyama_2023_2BTT",
"NCAP_I34A1_Doud_2015",
"NKX31_HUMAN_Tsuboyama_2023_2L9R",
"NPC1_HUMAN_Erwood_2022_HEK293T",
"NPC1_HUMAN_Erwood_2022_RPE1",
"NRAM_I33A0_Jiang_2016",
"NUD15_HUMAN_Suiter_2020",
"NUSA_ECOLI_Tsuboyama_2023_1WCL",
"NUSG_MYCTU_Tsuboyama_2023_2MI6",
"OBSCN_HUMAN_Tsuboyama_2023_1V1C",
"ODP2_GEOSE_Tsuboyama_2023_1W4G",
"OPSD_HUMAN_Wan_2019",
"OTC_HUMAN_Lo_2023",
"OTU7A_HUMAN_Tsuboyama_2023_2L2D",
"OXDA_RHOTO_Vanella_2023_activity",
"OXDA_RHOTO_Vanella_2023_expression",
"P53_HUMAN_Giacomelli_2018_Null_Etoposide",
"P53_HUMAN_Giacomelli_2018_Null_Nutlin",
"P53_HUMAN_Giacomelli_2018_WT_Nutlin",
"P53_HUMAN_Kotler_2018",
"P84126_THETH_Chan_2017",
"PA_I34A1_Wu_2015",
"PABP_YEAST_Melamed_2013",
"PAI1_HUMAN_Huttinger_2021",
"PHOT_CHLRE_Chen_2023",
"PIN1_HUMAN_Tsuboyama_2023_1I6C",
"PITX2_HUMAN_Tsuboyama_2023_2L7M",
"PKN1_HUMAN_Tsuboyama_2023_1URF",
"POLG_CXB3N_Mattenberger_2021",
"POLG_DEN26_Suphatrakul_2023",
"POLG_HCVJF_Qi_2014",
"POLG_PESV_Tsuboyama_2023_2MXD",
"PPARG_HUMAN_Majithia_2016",
"PPM1D_HUMAN_Miller_2022",
"PR40A_HUMAN_Tsuboyama_2023_1UZC",
"PRKN_HUMAN_Clausen_2023",
"PSAE_PICP2_Tsuboyama_2023_1PSE",
"PTEN_HUMAN_Matreyek_2021",
"PTEN_HUMAN_Mighell_2018",
"Q2N0S5_9HIV1_Haddox_2018",
"Q53Z42_HUMAN_McShan_2019_binding-TAPBPR",
"Q53Z42_HUMAN_McShan_2019_expression",
"Q59976_STRSQ_Romero_2015",
"Q6WV12_9MAXI_Somermeyer_2022",
"Q837P4_ENTFA_Meier_2023",
"Q837P5_ENTFA_Meier_2023",
"Q8WTC7_9CNID_Somermeyer_2022",
"R1AB_SARS2_Flynn_2022",
"RAD_ANTMA_Tsuboyama_2023_2CJJ",
"RAF1_HUMAN_Zinkus-Boltz_2019",
"RASH_HUMAN_Bandaru_2017",
"RASK_HUMAN_Weng_2022_abundance",
"RASK_HUMAN_Weng_2022_binding-DARPin_K55",
"RBP1_HUMAN_Tsuboyama_2023_2KWH",
"RCD1_ARATH_Tsuboyama_2023_5OAO",
"RCRO_LAMBD_Tsuboyama_2023_1ORC",
"RD23A_HUMAN_Tsuboyama_2023_1IFY",
"RDRP_I33A0_Li_2023",
"REV_HV1H2_Fernandes_2016",
"RFAH_ECOLI_Tsuboyama_2023_2LCL",
"RL20_AQUAE_Tsuboyama_2023_1GYZ",
"RL40A_YEAST_Mavor_2016",
"RL40A_YEAST_Roscoe_2013",
"RL40A_YEAST_Roscoe_2014",
"RNC_ECOLI_Weeks_2023",
"RPC1_BP434_Tsuboyama_2023_1R69",
"RPC1_LAMBD_Li_2019_high-expression",
"RPC1_LAMBD_Li_2019_low-expression",
"RS15_GEOSE_Tsuboyama_2023_1A32",
"S22A1_HUMAN_Yee_2023_abundance",
"S22A1_HUMAN_Yee_2023_activity",
"SAV1_MOUSE_Tsuboyama_2023_2YSB",
"SBI_STAAM_Tsuboyama_2023_2JVG",
"SC6A4_HUMAN_Young_2021",
"SCIN_STAAR_Tsuboyama_2023_2QFF",
"SCN5A_HUMAN_Glazer_2019",
"SDA_BACSU_Tsuboyama_2023_1PV0",
"SERC_HUMAN_Xie_2023",
"SHOC2_HUMAN_Kwon_2022",
"SOX30_HUMAN_Tsuboyama_2023_7JJK",
"SPA_STAAU_Tsuboyama_2023_1LP1",
"SPG1_STRSG_Olson_2014",
"SPG1_STRSG_Wu_2016",
"SPG2_STRSG_Tsuboyama_2023_5UBS",
"SPIKE_SARS2_Starr_2020_binding",
"SPIKE_SARS2_Starr_2020_expression",
"SPTN1_CHICK_Tsuboyama_2023_1TUD",
"SQSTM_MOUSE_Tsuboyama_2023_2RRU",
"SR43C_ARATH_Tsuboyama_2023_2N88",
"SRBS1_HUMAN_Tsuboyama_2023_2O2W",
"SRC_HUMAN_Ahler_2019",
"SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM",
"SRC_HUMAN_Nguyen_2022",
"SUMO1_HUMAN_Weile_2017",
"SYUA_HUMAN_Newberry_2020",
"TADBP_HUMAN_Bolognesi_2019",
"TAT_HV1BR_Fernandes_2016",
"TCRG1_MOUSE_Tsuboyama_2023_1E0L",
"THO1_YEAST_Tsuboyama_2023_2WQG",
"TNKS2_HUMAN_Tsuboyama_2023_5JRT",
"TPK1_HUMAN_Weile_2017",
"TPMT_HUMAN_Matreyek_2018",
"TPOR_HUMAN_Bridgford_2020",
"TRPC_SACS2_Chan_2017",
"TRPC_THEMA_Chan_2017",
"UBC9_HUMAN_Weile_2017",
"UBE4B_HUMAN_Tsuboyama_2023_3L1X",
"UBE4B_MOUSE_Starita_2013",
"UBR5_HUMAN_Tsuboyama_2023_1I2T",
"VG08_BPP22_Tsuboyama_2023_2GP8",
"VILI_CHICK_Tsuboyama_2023_1YU5",
"VKOR1_HUMAN_Chiasson_2020_abundance",
"VKOR1_HUMAN_Chiasson_2020_activity",
"VRPI_BPT7_Tsuboyama_2023_2WNM",
"YAIA_ECOLI_Tsuboyama_2023_2KVT",
"YAP1_HUMAN_Araya_2012",
"YNZC_BACSU_Tsuboyama_2023_2JVD",
]
ALL_INDEL_DMS_IDS = [
"A4_HUMAN_Seuma_2022_indels",
"AMFR_HUMAN_Tsuboyama_2023_4G3O_indels",
"ARGR_ECOLI_Tsuboyama_2023_1AOY_indels",
"B1LPA6_ECOSM_Russ_2020_indels",
"BBC1_YEAST_Tsuboyama_2023_1TG0_indels",
"BCHB_CHLTE_Tsuboyama_2023_2KRU_indels",
"BLAT_ECOLX_Gonzalez_2019_indels",
"CAPSD_AAV2S_Sinai_2021_designed_indels",
"CAPSD_AAV2S_Sinai_2021_library_indels",
"CATR_CHLRE_Tsuboyama_2023_2AMI_indels",
"CBPA2_HUMAN_Tsuboyama_2023_1O6X_indels",
"CBX4_HUMAN_Tsuboyama_2023_2K28_indels",
"CSN4_MOUSE_Tsuboyama_2023_1UFM_indels",
"CUE1_YEAST_Tsuboyama_2023_2MYX_indels",
"DN7A_SACS2_Tsuboyama_2023_1JIC_indels",
"DNJA1_HUMAN_Tsuboyama_2023_2LO1_indels",
"DOCK1_MOUSE_Tsuboyama_2023_2M0Y_indels",
"EPHB2_HUMAN_Tsuboyama_2023_1F0M_indels",
"FECA_ECOLI_Tsuboyama_2023_2D1U_indels",
"HCP_LAMBD_Tsuboyama_2023_2L6Q_indels",
"HECD1_HUMAN_Tsuboyama_2023_3DKM_indels",
"HIS7_YEAST_Pokusaeva_2019_indels",
"ILF3_HUMAN_Tsuboyama_2023_2L33_indels",
"KCNJ2_MOUSE_Macdonald_2022_indels",
"MAFG_MOUSE_Tsuboyama_2023_1K1V_indels",
"MBD11_ARATH_Tsuboyama_2023_6ACV_indels",
"MYO3_YEAST_Tsuboyama_2023_2BTT_indels",
"NKX31_HUMAN_Tsuboyama_2023_2L9R_indels",
"NUSA_ECOLI_Tsuboyama_2023_1WCL_indels",
"NUSG_MYCTU_Tsuboyama_2023_2MI6_indels",
"OBSCN_HUMAN_Tsuboyama_2023_1V1C_indels",
"ODP2_GEOSE_Tsuboyama_2023_1W4G_indels",
"OTU7A_HUMAN_Tsuboyama_2023_2L2D_indels",
"P53_HUMAN_Kotler_2018_indels",
"PIN1_HUMAN_Tsuboyama_2023_1I6C_indels",
"PITX2_HUMAN_Tsuboyama_2023_2L7M_indels",
"PKN1_HUMAN_Tsuboyama_2023_1URF_indels",
"POLG_PESV_Tsuboyama_2023_2MXD_indels",
"PR40A_HUMAN_Tsuboyama_2023_1UZC_indels",
"PSAE_PICP2_Tsuboyama_2023_1PSE_indels",
"PTEN_HUMAN_Mighell_2018_indels",
"Q8EG35_SHEON_Campbell_2022_indels",
"RAD_ANTMA_Tsuboyama_2023_2CJJ_indels",
"RCD1_ARATH_Tsuboyama_2023_5OAO_indels",
"RD23A_HUMAN_Tsuboyama_2023_1IFY_indels",
"RPC1_BP434_Tsuboyama_2023_1R69_indels",
"RS15_GEOSE_Tsuboyama_2023_1A32_indels",
"S22A1_HUMAN_Yee_2023_abundance_indels",
"S22A1_HUMAN_Yee_2023_activity_indels",
"SAV1_MOUSE_Tsuboyama_2023_2YSB_indels",
"SDA_BACSU_Tsuboyama_2023_1PV0_indels",
"SOX30_HUMAN_Tsuboyama_2023_7JJK_indels",
"SPG2_STRSG_Tsuboyama_2023_5UBS_indels",
"SPTN1_CHICK_Tsuboyama_2023_1TUD_indels",
"SQSTM_MOUSE_Tsuboyama_2023_2RRU_indels",
"SR43C_ARATH_Tsuboyama_2023_2N88_indels",
"SRBS1_HUMAN_Tsuboyama_2023_2O2W_indels",
"TCRG1_MOUSE_Tsuboyama_2023_1E0L_indels",
"THO1_YEAST_Tsuboyama_2023_2WQG_indels",
"TNKS2_HUMAN_Tsuboyama_2023_5JRT_indels",
"UBE4B_HUMAN_Tsuboyama_2023_3L1X_indels",
"UBR5_HUMAN_Tsuboyama_2023_1I2T_indels",
"VG08_BPP22_Tsuboyama_2023_2GP8_indels",
"VILI_CHICK_Tsuboyama_2023_1YU5_indels",
"VRPI_BPT7_Tsuboyama_2023_2WNM_indels",
"YNZC_BACSU_Tsuboyama_2023_2JVD_indels"
] |