UNet++ (code, models, paper)
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- .gitattributes +3 -0
- UNet++. A Nested U-Net Architecture for Medical Image Segmentation (slides).pdf +3 -0
- UNet++. Redesigning Skip Connections to Exploit Multiscale Features in Image Segmentation + Supplement.pdf +3 -0
- UNet++. Redesigning Skip Connections to Exploit Multiscale Features in Image Segmentation.pdf +3 -0
- code/UNetPlusPlus [cjjsu] +1.zip +3 -0
- code/UNetPlusPlus.zip +3 -0
- models/UNET_plus_plus_Brain_segmentation/.gitattributes +35 -0
- models/UNET_plus_plus_Brain_segmentation/README.md +16 -0
- models/UNET_plus_plus_Brain_segmentation/source.txt +1 -0
- models/UNET_plus_plus_Brain_segmentation/unet_model.h5 +3 -0
- models/UnetPlusPlus_resnet34/.gitattributes +35 -0
- models/UnetPlusPlus_resnet34/README.md +3 -0
- models/UnetPlusPlus_resnet34/model.pth +3 -0
- models/UnetPlusPlus_resnet34/source.txt +1 -0
- models/Unetplusplus_dolphin_segmentation/.gitattributes +35 -0
- models/Unetplusplus_dolphin_segmentation/README.md +3 -0
- models/Unetplusplus_dolphin_segmentation/Unetplusplusdolphinseg.pt +3 -0
- models/Unetplusplus_dolphin_segmentation/source.txt +1 -0
- models/fundus-odmac-segmentation-unetplusplus-mobilenetv3_small_050/.gitattributes +35 -0
- models/fundus-odmac-segmentation-unetplusplus-mobilenetv3_small_050/README.md +9 -0
- models/fundus-odmac-segmentation-unetplusplus-mobilenetv3_small_050/config.json +6 -0
- models/fundus-odmac-segmentation-unetplusplus-mobilenetv3_small_050/model.safetensors +3 -0
- models/fundus-odmac-segmentation-unetplusplus-mobilenetv3_small_050/source.txt +1 -0
- models/fundus-odmac-segmentation-unetplusplus-seresnet50/.gitattributes +35 -0
- models/fundus-odmac-segmentation-unetplusplus-seresnet50/README.md +9 -0
- models/fundus-odmac-segmentation-unetplusplus-seresnet50/config.json +6 -0
- models/fundus-odmac-segmentation-unetplusplus-seresnet50/model.safetensors +3 -0
- models/fundus-odmac-segmentation-unetplusplus-seresnet50/source.txt +1 -0
- models/octa-unetplusplus/.gitattributes +35 -0
- models/octa-unetplusplus/model_fold0/config.json +117 -0
- models/octa-unetplusplus/model_fold0/model_best_f0.pt +3 -0
- models/octa-unetplusplus/model_fold0/model_last.pt +3 -0
- models/octa-unetplusplus/model_fold0_crop96/config.json +117 -0
- models/octa-unetplusplus/model_fold0_crop96/model_best_f0.pt +3 -0
- models/octa-unetplusplus/model_fold0_crop96/model_last.pt +3 -0
- models/octa-unetplusplus/model_fold0_doppler/config.json +117 -0
- models/octa-unetplusplus/model_fold0_doppler/model_best_f0.pt +3 -0
- models/octa-unetplusplus/model_fold0_doppler/model_last.pt +3 -0
- models/octa-unetplusplus/model_fold0_intaug/config.json +117 -0
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- models/octa-unetplusplus/model_fold0_intaug/model_last.pt +3 -0
- models/octa-unetplusplus/model_fold0_pre/config.json +117 -0
- models/octa-unetplusplus/model_fold0_pre/model_best_f0.pt +3 -0
- models/octa-unetplusplus/model_fold0_pre/model_last.pt +3 -0
- models/octa-unetplusplus/model_fold1/config.json +117 -0
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- models/octa-unetplusplus/model_fold1/model_last.pt +3 -0
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- models/octa-unetplusplus/model_fold1_pre/model_best_f1.pt +3 -0
- models/octa-unetplusplus/model_fold1_pre/model_last.pt +3 -0
.gitattributes
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UNet++.[[:space:]]A[[:space:]]Nested[[:space:]]U-Net[[:space:]]Architecture[[:space:]]for[[:space:]]Medical[[:space:]]Image[[:space:]]Segmentation[[:space:]](slides).pdf filter=lfs diff=lfs merge=lfs -text
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UNet++.[[:space:]]Redesigning[[:space:]]Skip[[:space:]]Connections[[:space:]]to[[:space:]]Exploit[[:space:]]Multiscale[[:space:]]Features[[:space:]]in[[:space:]]Image[[:space:]]Segmentation[[:space:]]+[[:space:]]Supplement.pdf filter=lfs diff=lfs merge=lfs -text
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UNet++.[[:space:]]Redesigning[[:space:]]Skip[[:space:]]Connections[[:space:]]to[[:space:]]Exploit[[:space:]]Multiscale[[:space:]]Features[[:space:]]in[[:space:]]Image[[:space:]]Segmentation.pdf filter=lfs diff=lfs merge=lfs -text
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UNet++. A Nested U-Net Architecture for Medical Image Segmentation (slides).pdf
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UNet++. Redesigning Skip Connections to Exploit Multiscale Features in Image Segmentation + Supplement.pdf
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UNet++. Redesigning Skip Connections to Exploit Multiscale Features in Image Segmentation.pdf
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code/UNetPlusPlus [cjjsu] +1.zip
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code/UNetPlusPlus.zip
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models/UNET_plus_plus_Brain_segmentation/.gitattributes
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models/UNET_plus_plus_Brain_segmentation/README.md
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---
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license: mit
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datasets:
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- rishirajbal/UNET_plus_plus_BRAIN_DATA
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language:
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- en
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metrics:
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- accuracy
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base_model:
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- rishirajbal/UNET_plus_plus_Brain_segmentation
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pipeline_tag: image-segmentation
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library_name: keras
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tags:
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- medical
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new_version: rishirajbal/UNET_plus_plus_Brain_segmentation
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---
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models/UNET_plus_plus_Brain_segmentation/source.txt
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https://huggingface.co/rishirajbal/UNET_plus_plus_Brain_segmentation
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models/UNET_plus_plus_Brain_segmentation/unet_model.h5
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models/UnetPlusPlus_resnet34/.gitattributes
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models/UnetPlusPlus_resnet34/README.md
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---
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license: mit
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---
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models/UnetPlusPlus_resnet34/model.pth
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models/UnetPlusPlus_resnet34/source.txt
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https://huggingface.co/anhtu77/UnetPlusPlus_resnet34/tree/main
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models/Unetplusplus_dolphin_segmentation/.gitattributes
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models/Unetplusplus_dolphin_segmentation/README.md
ADDED
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| 1 |
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---
|
| 2 |
+
license: unknown
|
| 3 |
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---
|
models/Unetplusplus_dolphin_segmentation/Unetplusplusdolphinseg.pt
ADDED
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@@ -0,0 +1,3 @@
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models/Unetplusplus_dolphin_segmentation/source.txt
ADDED
|
@@ -0,0 +1 @@
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|
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|
| 1 |
+
https://huggingface.co/Alexandr45/Unetplusplus_dolphin_segmentation
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models/fundus-odmac-segmentation-unetplusplus-mobilenetv3_small_050/README.md
ADDED
|
@@ -0,0 +1,9 @@
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| 1 |
+
---
|
| 2 |
+
tags:
|
| 3 |
+
- model_hub_mixin
|
| 4 |
+
- pytorch_model_hub_mixin
|
| 5 |
+
---
|
| 6 |
+
|
| 7 |
+
This model has been pushed to the Hub using the [PytorchModelHubMixin](https://huggingface.co/docs/huggingface_hub/package_reference/mixins#huggingface_hub.PyTorchModelHubMixin) integration:
|
| 8 |
+
- Library: [More Information Needed]
|
| 9 |
+
- Docs: [More Information Needed]
|
models/fundus-odmac-segmentation-unetplusplus-mobilenetv3_small_050/config.json
ADDED
|
@@ -0,0 +1,6 @@
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"arch": "unetplusplus",
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"classes": 3,
|
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"encoder": "mobilenetv3_small_050",
|
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"in_channels": 3
|
| 6 |
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|
models/fundus-odmac-segmentation-unetplusplus-mobilenetv3_small_050/model.safetensors
ADDED
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version https://git-lfs.github.com/spec/v1
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models/fundus-odmac-segmentation-unetplusplus-mobilenetv3_small_050/source.txt
ADDED
|
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|
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|
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|
| 1 |
+
https://huggingface.co/ClementP/fundus-odmac-segmentation-unetplusplus-mobilenetv3_small_050
|
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ADDED
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models/fundus-odmac-segmentation-unetplusplus-seresnet50/README.md
ADDED
|
@@ -0,0 +1,9 @@
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|
| 1 |
+
---
|
| 2 |
+
tags:
|
| 3 |
+
- model_hub_mixin
|
| 4 |
+
- pytorch_model_hub_mixin
|
| 5 |
+
---
|
| 6 |
+
|
| 7 |
+
This model has been pushed to the Hub using the [PytorchModelHubMixin](https://huggingface.co/docs/huggingface_hub/package_reference/mixins#huggingface_hub.PyTorchModelHubMixin) integration:
|
| 8 |
+
- Library: [More Information Needed]
|
| 9 |
+
- Docs: [More Information Needed]
|
models/fundus-odmac-segmentation-unetplusplus-seresnet50/config.json
ADDED
|
@@ -0,0 +1,6 @@
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|
| 2 |
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|
| 3 |
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|
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|
| 5 |
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|
| 6 |
+
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|
models/fundus-odmac-segmentation-unetplusplus-seresnet50/model.safetensors
ADDED
|
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models/fundus-odmac-segmentation-unetplusplus-seresnet50/source.txt
ADDED
|
@@ -0,0 +1 @@
|
|
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|
| 1 |
+
https://huggingface.co/ClementP/fundus-odmac-segmentation-unetplusplus-seresnet50
|
models/octa-unetplusplus/.gitattributes
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| 21 |
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| 22 |
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| 27 |
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models/octa-unetplusplus/model_fold0/config.json
ADDED
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| 1 |
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{
|
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|
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models/octa-unetplusplus/model_fold0/model_best_f0.pt
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|
models/octa-unetplusplus/model_fold0_crop96/model_best_f0.pt
ADDED
|
@@ -0,0 +1,3 @@
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models/octa-unetplusplus/model_fold0_crop96/model_last.pt
ADDED
|
@@ -0,0 +1,3 @@
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models/octa-unetplusplus/model_fold0_doppler/config.json
ADDED
|
@@ -0,0 +1,117 @@
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|
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models/octa-unetplusplus/model_fold0_doppler/model_best_f0.pt
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|
models/octa-unetplusplus/model_fold0_intaug/model_best_f0.pt
ADDED
|
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ADDED
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@@ -0,0 +1,3 @@
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models/octa-unetplusplus/model_fold0_pre/config.json
ADDED
|
@@ -0,0 +1,117 @@
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models/octa-unetplusplus/model_fold0_pre/model_best_f0.pt
ADDED
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models/octa-unetplusplus/model_fold0_pre/model_last.pt
ADDED
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version https://git-lfs.github.com/spec/v1
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models/octa-unetplusplus/model_fold1/config.json
ADDED
|
@@ -0,0 +1,117 @@
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|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
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"sim_data": "/home/bwittm/share/synthetic_cerebral_octa",
|
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|
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"annotations": "/home/bwittm/share/manual_annotations_incldoppler",
|
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"test_imgs": [
|
| 6 |
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"m4_1"
|
| 7 |
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],
|
| 8 |
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"val_imgs": [
|
| 9 |
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"m4_1"
|
| 10 |
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],
|
| 11 |
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|
| 12 |
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|
| 13 |
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"train_img": [
|
| 14 |
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"m4_0",
|
| 15 |
+
"m44_0",
|
| 16 |
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"m44_1",
|
| 17 |
+
"m78_0",
|
| 18 |
+
"m78_1"
|
| 19 |
+
],
|
| 20 |
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"experiment_name": "superunet_fold1",
|
| 21 |
+
"device": "cuda:0",
|
| 22 |
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"store_ckpt": true,
|
| 23 |
+
"epochs": 400,
|
| 24 |
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"epochs_decay": 50,
|
| 25 |
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"val_interval": 1,
|
| 26 |
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"itera_pro_epoch": 50000,
|
| 27 |
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"seed": 0,
|
| 28 |
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|
| 29 |
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"num_workers": 16,
|
| 30 |
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|
| 31 |
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"sliding_window_mode": "constant",
|
| 32 |
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"threshold": 0.5,
|
| 33 |
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"seg": {
|
| 34 |
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"lr": "1e-5",
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| 35 |
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| 39 |
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| 40 |
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| 42 |
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| 43 |
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| 44 |
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| 46 |
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| 47 |
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],
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| 48 |
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"activation": "LEAKYRELU",
|
| 49 |
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"normalization": "BATCH",
|
| 50 |
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"dropout": 0.3,
|
| 51 |
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"max_norm_clip": 1.0,
|
| 52 |
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|
| 53 |
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"iter": 15,
|
| 54 |
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"smooth": 1
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| 56 |
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| 64 |
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| 73 |
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|
| 80 |
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"gaussian_smooth_sigma": [
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"intensity_scale_factors": [
|
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|
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"adjust_contrast_gamma": [
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|
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|
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"control_points": [
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|
| 113 |
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|
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|
| 117 |
+
}
|
models/octa-unetplusplus/model_fold1/model_best_f1.pt
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 3 |
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size 379775475
|
models/octa-unetplusplus/model_fold1/model_last.pt
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
|
|
|
|
|
|
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| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 3 |
+
size 379774439
|
models/octa-unetplusplus/model_fold1_pre/config.json
ADDED
|
@@ -0,0 +1,117 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
| 1 |
+
{
|
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"sim_data": "/home/bwittm/share/synthetic_cerebral_octa",
|
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"sim_data_version": "b421",
|
| 4 |
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"annotations": "/home/bwittm/share/manual_annotations_incldoppler",
|
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"test_imgs": [
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"m4_1"
|
| 7 |
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],
|
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"val_imgs": [
|
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"m4_1"
|
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],
|
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"train_on_real": true,
|
| 12 |
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"use_doppler": false,
|
| 13 |
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"train_img": [
|
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"m4_0",
|
| 15 |
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"m44_0",
|
| 16 |
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"m44_1",
|
| 17 |
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"m78_0",
|
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"m78_1"
|
| 19 |
+
],
|
| 20 |
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"experiment_name": "superunet_fold1_pre",
|
| 21 |
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"device": "cuda:0",
|
| 22 |
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|
| 23 |
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"epochs": 400,
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| 24 |
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|
| 25 |
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"val_interval": 1,
|
| 26 |
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"itera_pro_epoch": 50000,
|
| 27 |
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"seed": 0,
|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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"sliding_window_mode": "constant",
|
| 32 |
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"threshold": 0.5,
|
| 33 |
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"seg": {
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| 34 |
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"lr": "1e-5",
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| 35 |
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"channels": [
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64,
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| 37 |
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|
| 38 |
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| 39 |
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512,
|
| 40 |
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1024
|
| 41 |
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|
| 44 |
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| 45 |
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| 46 |
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| 47 |
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],
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| 48 |
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"activation": "LEAKYRELU",
|
| 49 |
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"normalization": "BATCH",
|
| 50 |
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"dropout": 0.3,
|
| 51 |
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"max_norm_clip": 1.0,
|
| 52 |
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"cldice": false,
|
| 53 |
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"iter": 15,
|
| 54 |
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"alpha": 0.5,
|
| 55 |
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"smooth": 1
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| 56 |
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},
|
| 57 |
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"augmentation": {
|
| 58 |
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"patch_size": [
|
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64,
|
| 60 |
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64,
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| 61 |
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|
| 62 |
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| 63 |
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"use_augmentation": true,
|
| 64 |
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"p_gaussian_noise": 0.5,
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"p_gaussian_smooth": 0.5,
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"p_intensity_scale": 0,
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| 67 |
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"p_intensity_shift": 0,
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"p_adjust_contrast": 0,
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| 69 |
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"p_histogram_shift": 0.5,
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| 70 |
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"p_rotate": 0.5,
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| 71 |
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"p_zoom": 0.5,
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"p_shear": 0,
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],
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"gaussian_noise_mean": 0.0,
|
| 79 |
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"gaussian_noise_std": 0.01,
|
| 80 |
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"gaussian_smooth_sigma": [
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0.0,
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],
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"intensity_scale_factors": [
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|
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"intensity_shift_offsets": [
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|
| 95 |
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"python_version": "3.8.19 | packaged by conda-forge | (default, Mar 20 2024, 12:47:35) ",
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"gcc_version": "[GCC 12.3.0]",
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"host_name": "u20-computegpu-5"
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}
|
models/octa-unetplusplus/model_fold1_pre/model_best_f1.pt
ADDED
|
@@ -0,0 +1,3 @@
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|
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version https://git-lfs.github.com/spec/v1
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size 379775411
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models/octa-unetplusplus/model_fold1_pre/model_last.pt
ADDED
|
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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size 379774439
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