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@@ -7,10 +7,13 @@
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* DESCRIPTION: Generate sequences using a Markov model.
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**************************************************************************/
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+#ifndef MAIN
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#define DEFINE_GLOBALS
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+#endif
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#include "macros.h"
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#include "fcodon.h"
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#include "background.h"
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+#include "gendb.h"
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#include "hash_alph.h"
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#include "seq.h"
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@@ -19,6 +22,7 @@
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#define SEQS 10 /* number of sequences */
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#define MAX_ORDER 10 // largest Markov model order
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+#ifndef MAIN
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/**************************************************************************/
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/*
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get_letters
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@@ -301,7 +305,7 @@
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Generate a file of synthetic sequences.
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*/
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/**************************************************************************/
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-extern SEQ_T *gendb(
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+SEQ_T *gendb(
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FILE *out, // Output stream; return output if null.
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int type, // Type of alphabet.
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// 0: protein w/ambigs
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@@ -336,6 +340,7 @@
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// Print the random sequences.
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return (print_random_seqs(out, seed, nseqs, min, max, letters, r, c, order, cum));
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} // gendb
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+#endif
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#ifdef MAIN
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@@ -416,7 +421,7 @@
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}
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}
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if (option_index + 1 != argc) {
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- fprintf(stderr, usage);
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+ fprintf(stderr, "%s", usage);
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exit(EXIT_FAILURE);
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}
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int nseqs = atoi(argv[option_index]);
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