Add files using upload-large-folder tool
Browse filesThis view is limited to 50 files because it contains too many changes.
See raw diff
- nnActive_results/Dataset007_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40__unc-power_bald__seed-12348/config.json +29 -0
- nnActive_results/Dataset007_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40__unc-power_bald__seed-12348/state.json +12 -0
- nnActive_results/Dataset014_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12347/config.json +29 -0
- nnActive_results/Dataset014_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12347/state.json +12 -0
- nnActive_results/Dataset045_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-pred_entropy__seed-12345/config.json +29 -0
- nnActive_results/Dataset045_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-pred_entropy__seed-12345/state.json +12 -0
- nnActive_results/Dataset056_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label__seed-12348/config.json +29 -0
- nnActive_results/Dataset056_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label__seed-12348/state.json +12 -0
- nnActive_results/Dataset097_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-softrank_bald__seed-12345/config.json +29 -0
- nnActive_results/Dataset097_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-softrank_bald__seed-12345/state.json +12 -0
- nnActive_results/Dataset119_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500__unc-random-label2__seed-12347/config.json +29 -0
- nnActive_results/Dataset119_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500__unc-random-label2__seed-12347/state.json +12 -0
- nnActive_results/Dataset149_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-mutual_information__seed-12345/config.json +30 -0
- nnActive_results/Dataset149_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-mutual_information__seed-12345/state.json +12 -0
- nnActive_results/Dataset154_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-power_bald__seed-12345/config.json +30 -0
- nnActive_results/Dataset154_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-power_bald__seed-12345/state.json +12 -0
- nnActive_results/Dataset155_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-power_bald__seed-12346/config.json +30 -0
- nnActive_results/Dataset155_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-power_bald__seed-12346/state.json +12 -0
- nnActive_results/Dataset172_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-random-label__seed-12347/config.json +30 -0
- nnActive_results/Dataset172_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-random-label__seed-12347/state.json +12 -0
- nnActive_results/Dataset211_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-20__unc-random-label__seed-12346/config.json +30 -0
- nnActive_results/Dataset211_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-20__unc-random-label__seed-12346/state.json +12 -0
- nnActive_results/Dataset227_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-power_bald__seed-12346/config.json +30 -0
- nnActive_results/Dataset227_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-power_bald__seed-12346/state.json +12 -0
- nnActive_results/Dataset244_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-pred_entropy__seed-12345/config.json +30 -0
- nnActive_results/Dataset244_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-pred_entropy__seed-12345/state.json +12 -0
- nnActive_results/Dataset248_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-random-label2__seed-12346/config.json +30 -0
- nnActive_results/Dataset248_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-random-label2__seed-12346/state.json +12 -0
- nnActive_results/Dataset273_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500__unc-power_pe__seed-12348/config.json +30 -0
- nnActive_results/Dataset273_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500__unc-power_pe__seed-12348/state.json +12 -0
- nnActive_results/Dataset295_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-1000__unc-mutual_information__seed-12348/config.json +30 -0
- nnActive_results/Dataset295_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-1000__unc-mutual_information__seed-12348/state.json +12 -0
- nnActive_results/Dataset361_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-40__qs-40__unc-power_bald__seed-12347/config.json +30 -0
- nnActive_results/Dataset361_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-40__qs-40__unc-power_bald__seed-12347/state.json +12 -0
- nnActive_results/Dataset416_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80__unc-softrank_bald__seed-12346/config.json +30 -0
- nnActive_results/Dataset416_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80__unc-softrank_bald__seed-12346/state.json +12 -0
- nnActive_results/Dataset417_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80__unc-softrank_bald__seed-12347/config.json +30 -0
- nnActive_results/Dataset417_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80__unc-softrank_bald__seed-12347/state.json +12 -0
- nnActive_results/Dataset426_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-power_pe__seed-12345/config.json +30 -0
- nnActive_results/Dataset426_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-power_pe__seed-12345/state.json +12 -0
- nnActive_results/Dataset431_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-pred_entropy__seed-12346/config.json +30 -0
- nnActive_results/Dataset431_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-pred_entropy__seed-12346/state.json +12 -0
- nnActive_results/Dataset435_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label2__seed-12346/config.json +30 -0
- nnActive_results/Dataset435_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label2__seed-12346/state.json +12 -0
- nnActive_results/Dataset436_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label2__seed-12347/config.json +30 -0
- nnActive_results/Dataset436_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label2__seed-12347/state.json +12 -0
- nnActive_results/Dataset441_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label__seed-12348/config.json +30 -0
- nnActive_results/Dataset441_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label__seed-12348/state.json +12 -0
- nnActive_results/Dataset480_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-500__qs-500__unc-softrank_bald__seed-12347/config.json +30 -0
- nnActive_results/Dataset480_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-500__qs-500__unc-softrank_bald__seed-12347/state.json +12 -0
nnActive_results/Dataset007_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40__unc-power_bald__seed-12348/config.json
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_bald",
|
| 14 |
+
"aggregation": "patch",
|
| 15 |
+
"query_size": 40,
|
| 16 |
+
"query_steps": 5,
|
| 17 |
+
"agg_stride": 8,
|
| 18 |
+
"n_patch_per_image": 20,
|
| 19 |
+
"seed": 12348,
|
| 20 |
+
"full_folds": 5,
|
| 21 |
+
"train_folds": 5,
|
| 22 |
+
"dataset": "Dataset135_KiTS2021",
|
| 23 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40",
|
| 24 |
+
"use_mirroring": false,
|
| 25 |
+
"use_gaussian": true,
|
| 26 |
+
"tile_step_size": 0.75,
|
| 27 |
+
"patch_overlap": 0.0,
|
| 28 |
+
"additional_overlap": 0.4
|
| 29 |
+
}
|
nnActive_results/Dataset007_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40__unc-power_bald__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 7,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40__unc-power_bald__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset014_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12347/config.json
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "pred_entropy",
|
| 14 |
+
"aggregation": "patch",
|
| 15 |
+
"query_size": 40,
|
| 16 |
+
"query_steps": 5,
|
| 17 |
+
"agg_stride": 8,
|
| 18 |
+
"n_patch_per_image": 20,
|
| 19 |
+
"seed": 12347,
|
| 20 |
+
"full_folds": 5,
|
| 21 |
+
"train_folds": 5,
|
| 22 |
+
"dataset": "Dataset135_KiTS2021",
|
| 23 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40",
|
| 24 |
+
"use_mirroring": false,
|
| 25 |
+
"use_gaussian": true,
|
| 26 |
+
"tile_step_size": 0.75,
|
| 27 |
+
"patch_overlap": 0.0,
|
| 28 |
+
"additional_overlap": 0.4
|
| 29 |
+
}
|
nnActive_results/Dataset014_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 14,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset045_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-pred_entropy__seed-12345/config.json
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "pred_entropy",
|
| 14 |
+
"aggregation": "patch",
|
| 15 |
+
"query_size": 200,
|
| 16 |
+
"query_steps": 5,
|
| 17 |
+
"agg_stride": 8,
|
| 18 |
+
"n_patch_per_image": 20,
|
| 19 |
+
"seed": 12345,
|
| 20 |
+
"full_folds": 5,
|
| 21 |
+
"train_folds": 5,
|
| 22 |
+
"dataset": "Dataset135_KiTS2021",
|
| 23 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200",
|
| 24 |
+
"use_mirroring": false,
|
| 25 |
+
"use_gaussian": true,
|
| 26 |
+
"tile_step_size": 0.75,
|
| 27 |
+
"patch_overlap": 0.0,
|
| 28 |
+
"additional_overlap": 0.4
|
| 29 |
+
}
|
nnActive_results/Dataset045_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-pred_entropy__seed-12345/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 45,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-pred_entropy__seed-12345",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset056_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label__seed-12348/config.json
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label",
|
| 14 |
+
"aggregation": "patch",
|
| 15 |
+
"query_size": 200,
|
| 16 |
+
"query_steps": 5,
|
| 17 |
+
"agg_stride": 8,
|
| 18 |
+
"n_patch_per_image": 20,
|
| 19 |
+
"seed": 12348,
|
| 20 |
+
"full_folds": 5,
|
| 21 |
+
"train_folds": 5,
|
| 22 |
+
"dataset": "Dataset135_KiTS2021",
|
| 23 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200",
|
| 24 |
+
"use_mirroring": false,
|
| 25 |
+
"use_gaussian": true,
|
| 26 |
+
"tile_step_size": 0.75,
|
| 27 |
+
"patch_overlap": 0.0,
|
| 28 |
+
"additional_overlap": 0.4
|
| 29 |
+
}
|
nnActive_results/Dataset056_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 56,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset097_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-softrank_bald__seed-12345/config.json
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_500epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "softrank_bald",
|
| 14 |
+
"aggregation": "patch",
|
| 15 |
+
"query_size": 200,
|
| 16 |
+
"query_steps": 5,
|
| 17 |
+
"agg_stride": 8,
|
| 18 |
+
"n_patch_per_image": 20,
|
| 19 |
+
"seed": 12345,
|
| 20 |
+
"full_folds": 5,
|
| 21 |
+
"train_folds": 5,
|
| 22 |
+
"dataset": "Dataset135_KiTS2021",
|
| 23 |
+
"pre_suffix": "__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200",
|
| 24 |
+
"use_mirroring": false,
|
| 25 |
+
"use_gaussian": true,
|
| 26 |
+
"tile_step_size": 0.75,
|
| 27 |
+
"patch_overlap": 0.0,
|
| 28 |
+
"additional_overlap": 0.4
|
| 29 |
+
}
|
nnActive_results/Dataset097_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-softrank_bald__seed-12345/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 97,
|
| 3 |
+
"name": "KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-softrank_bald__seed-12345",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset119_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500__unc-random-label2__seed-12347/config.json
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 500,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label2",
|
| 14 |
+
"aggregation": "patch",
|
| 15 |
+
"query_size": 500,
|
| 16 |
+
"query_steps": 5,
|
| 17 |
+
"agg_stride": 8,
|
| 18 |
+
"n_patch_per_image": 20,
|
| 19 |
+
"seed": 12347,
|
| 20 |
+
"full_folds": 5,
|
| 21 |
+
"train_folds": 5,
|
| 22 |
+
"dataset": "Dataset135_KiTS2021",
|
| 23 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500",
|
| 24 |
+
"use_mirroring": false,
|
| 25 |
+
"use_gaussian": true,
|
| 26 |
+
"tile_step_size": 0.75,
|
| 27 |
+
"patch_overlap": 0.0,
|
| 28 |
+
"additional_overlap": 0.4
|
| 29 |
+
}
|
nnActive_results/Dataset119_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500__unc-random-label2__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 119,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500__unc-random-label2__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset149_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-mutual_information__seed-12345/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_500epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "mutual_information",
|
| 14 |
+
"queries_from_experiment": "KiTS2021__patch-128_128_128__sb-random-label2-all-classes__sbs-200__qs-200__unc-mutual_information__seed-12345",
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 200,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 200,
|
| 20 |
+
"seed": 12345,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset149_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-mutual_information__seed-12345/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 149,
|
| 3 |
+
"name": "KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-mutual_information__seed-12345",
|
| 4 |
+
"loop": 0,
|
| 5 |
+
"preprocess": false,
|
| 6 |
+
"training": false,
|
| 7 |
+
"get_performance": false,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset154_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-power_bald__seed-12345/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_500epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_bald",
|
| 14 |
+
"queries_from_experiment": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-power_bald__seed-12345",
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 200,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 200,
|
| 20 |
+
"seed": 12345,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset154_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-power_bald__seed-12345/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 154,
|
| 3 |
+
"name": "KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-power_bald__seed-12345",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset155_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-power_bald__seed-12346/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_500epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_bald",
|
| 14 |
+
"queries_from_experiment": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-power_bald__seed-12346",
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 200,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 200,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset155_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-power_bald__seed-12346/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 155,
|
| 3 |
+
"name": "KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-power_bald__seed-12346",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset172_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-random-label__seed-12347/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_500epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label",
|
| 14 |
+
"queries_from_experiment": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label__seed-12347",
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 200,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 200,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset172_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-random-label__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 172,
|
| 3 |
+
"name": "KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-200__qs-200__precomputed-queries__unc-random-label__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset211_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-20__unc-random-label__seed-12346/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 20,
|
| 17 |
+
"query_steps": 9,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-20",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset211_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-20__unc-random-label__seed-12346/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 211,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-20__unc-random-label__seed-12346",
|
| 4 |
+
"loop": 8,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset227_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-power_bald__seed-12346/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 500,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_bald",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 250,
|
| 17 |
+
"query_steps": 9,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 250,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset227_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-power_bald__seed-12346/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 227,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-power_bald__seed-12346",
|
| 4 |
+
"loop": 8,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset244_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-pred_entropy__seed-12345/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 500,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "pred_entropy",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 250,
|
| 17 |
+
"query_steps": 9,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 250,
|
| 20 |
+
"seed": 12345,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset244_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-pred_entropy__seed-12345/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 244,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-pred_entropy__seed-12345",
|
| 4 |
+
"loop": 8,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset248_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-random-label2__seed-12346/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 500,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label2",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 250,
|
| 17 |
+
"query_steps": 9,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 250,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset248_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-random-label2__seed-12346/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 248,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-250__unc-random-label2__seed-12346",
|
| 4 |
+
"loop": 8,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset273_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500__unc-power_pe__seed-12348/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 500,
|
| 10 |
+
"trainer": "nnActiveTrainer_500epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_pe",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 500,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12348,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset273_KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500__unc-power_pe__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 273,
|
| 3 |
+
"name": "KiTS2021__tr-nnActiveTrainer_500epochs__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-500__unc-power_pe__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset295_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-1000__unc-mutual_information__seed-12348/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 500,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "mutual_information",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 1000,
|
| 17 |
+
"query_steps": 3,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 1000,
|
| 20 |
+
"seed": 12348,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-1000",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset295_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-1000__unc-mutual_information__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 295,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-500__qs-1000__unc-mutual_information__seed-12348",
|
| 4 |
+
"loop": 2,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset361_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-40__qs-40__unc-power_bald__seed-12347/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
32,
|
| 4 |
+
32,
|
| 5 |
+
32
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_bald",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 40,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 40,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-32_32_32__sb-random-label2-all-classes__sbs-40__qs-40",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset361_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-40__qs-40__unc-power_bald__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 361,
|
| 3 |
+
"name": "KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-40__qs-40__unc-power_bald__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset416_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80__unc-softrank_bald__seed-12346/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "softrank_bald",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 80,
|
| 17 |
+
"query_steps": 3,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 80,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset416_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80__unc-softrank_bald__seed-12346/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 416,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80__unc-softrank_bald__seed-12346",
|
| 4 |
+
"loop": 2,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset417_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80__unc-softrank_bald__seed-12347/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
64,
|
| 4 |
+
64,
|
| 5 |
+
64
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "softrank_bald",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 80,
|
| 17 |
+
"query_steps": 3,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 80,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset417_KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80__unc-softrank_bald__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 417,
|
| 3 |
+
"name": "KiTS2021__patch-64_64_64__sb-random-label2-all-classes__sbs-40__qs-80__unc-softrank_bald__seed-12347",
|
| 4 |
+
"loop": 2,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset426_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-power_pe__seed-12345/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
32,
|
| 4 |
+
32,
|
| 5 |
+
32
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_pe",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 200,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 200,
|
| 20 |
+
"seed": 12345,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset426_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-power_pe__seed-12345/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 426,
|
| 3 |
+
"name": "KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-power_pe__seed-12345",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset431_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-pred_entropy__seed-12346/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
32,
|
| 4 |
+
32,
|
| 5 |
+
32
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "pred_entropy",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 200,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 200,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset431_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-pred_entropy__seed-12346/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 431,
|
| 3 |
+
"name": "KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-pred_entropy__seed-12346",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset435_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label2__seed-12346/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
32,
|
| 4 |
+
32,
|
| 5 |
+
32
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label2",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 200,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 200,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset435_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label2__seed-12346/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 435,
|
| 3 |
+
"name": "KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label2__seed-12346",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset436_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label2__seed-12347/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
32,
|
| 4 |
+
32,
|
| 5 |
+
32
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label2",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 200,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 200,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset436_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label2__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 436,
|
| 3 |
+
"name": "KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label2__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset441_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label__seed-12348/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
32,
|
| 4 |
+
32,
|
| 5 |
+
32
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 200,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 200,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 200,
|
| 20 |
+
"seed": 12348,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset441_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 441,
|
| 3 |
+
"name": "KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-200__qs-200__unc-random-label__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset480_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-500__qs-500__unc-softrank_bald__seed-12347/config.json
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
32,
|
| 4 |
+
32,
|
| 5 |
+
32
|
| 6 |
+
],
|
| 7 |
+
"base_id": 135,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 500,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "softrank_bald",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 500,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 500,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset135_KiTS2021",
|
| 24 |
+
"pre_suffix": "__patch-32_32_32__sb-random-label2-all-classes__sbs-500__qs-500",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4
|
| 30 |
+
}
|
nnActive_results/Dataset480_KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-500__qs-500__unc-softrank_bald__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 480,
|
| 3 |
+
"name": "KiTS2021__patch-32_32_32__sb-random-label2-all-classes__sbs-500__qs-500__unc-softrank_bald__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|