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end of file diff --git a/nnActive_results/Dataset016_MAMA_MIA_subtracted__patch-16_48_57__sb-random-label2-all-classes__sbs-100__qs-100__unc-random__seed-12348/state.json b/nnActive_results/Dataset016_MAMA_MIA_subtracted__patch-16_48_57__sb-random-label2-all-classes__sbs-100__qs-100__unc-random__seed-12348/state.json new file mode 100644 index 0000000000000000000000000000000000000000..29c573204daf976db086cf9b69ac473e2b75a25b --- /dev/null +++ b/nnActive_results/Dataset016_MAMA_MIA_subtracted__patch-16_48_57__sb-random-label2-all-classes__sbs-100__qs-100__unc-random__seed-12348/state.json @@ -0,0 +1,12 @@ +{ + "dataset_id": 16, + "name": "MAMA_MIA_subtracted__patch-16_48_57__sb-random-label2-all-classes__sbs-100__qs-100__unc-random__seed-12348", + "loop": 4, + "preprocess": true, + "training": true, + "get_performance": true, + "pred_tr": false, + "query": false, + "update_data": false, + "in_progress": false +} \ No newline at end of file diff --git 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+{ + "channel_names": { + "0": "MRI Subtraction Image" + }, + "labels": { + "background": 0, + "lesion": 1, + "ignore": 2 + }, + "numTraining": 1506, + "file_ending": ".nii.gz", + "name": "Dataset095_MAMA_MIA_subtracted__patch-16_48_57__sb-random-label2-all-classes__sbs-100__qs-100__unc-random-label__seed-12347", + "reference": "https://www.synapse.org/Synapse:syn60868042/wiki/628716", + "licence": "CC BY 3.0 (ISPY1 Trial, Breast-MRI-NACT-Pilot), CC BY 4.0 (ISPY2 Trial), CC BY-NC 4.0 (Duke-Breast-Cancer-MRI)", + "citation": [ + "Garrucho, Lidia, et al. \"MAMA-MIA: A Large-Scale Multi-Center Breast Cancer DCE-MRI Benchmark Dataset with Expert Segmentations.\" arXiv preprint arXiv:2406.13844 (2024).", + "David Newitt, Nola Hylton, on behalf of the I-SPY 1 Network and ACRIN 6657 Trial Team. (2016). Multi-center breast DCE-MRI data and segmentations from patients in the I-SPY 1/ACRIN 6657 trials. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2016.HdHpgJLK", + "Newitt, D., & Hylton, N. (2016). Single site breast DCE-MRI data and segmentations from patients undergoing neoadjuvant chemotherapy (Version 3) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2016.QHsyhJKy", + "Li, W., Newitt, D. C., Gibbs, J., Wilmes, L. J., Jones, E. F., Arasu, V. A., Strand, F., Onishi, N., Nguyen, A. A.-T., Kornak, J., Joe, B. N., Price, E. R., Ojeda-Fournier, H., Eghtedari, M., Zamora, K. W., Woodard, S. A., Umphrey, H., Bernreuter, W., Nelson, M., \u2026 Hylton, N. M. (2022). I-SPY 2 Breast Dynamic Contrast Enhanced MRI Trial (ISPY2) (Version 1) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.D8Z0-9T85", + "Saha, A., Harowicz, M. R., Grimm, L. J., Weng, J., Cain, E. H., Kim, C. E., Ghate, S. V., Walsh, R., & Mazurowski, M. A. (2021). Dynamic contrast-enhanced magnetic resonance images of breast cancer patients with tumor locations [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.e3sv-re93" + ], + "converted_by": "Fabian Isensee", + "note": "Obtained from original dataset by subtracting ( _0001 - _0000 ). We only convert _0000, _0001 and _0002 because this is the highest number of time points that works for all cases! Later time points are discarded. 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