Keep updated SIF, SquashFS and Docker images and their checksums at existing paths. Remove redundant OCI exports, build-recipe copies and JSON reports from the current runtime tree; validation remains linked from the public bucket. No container binaries, weights or AF2 files are changed.
Publish tested CUDA 12/13 AF3 and OpenFold3 runtimes with index-gap support
Both CUDA builds contain AF3 fork revision 8d36011. Validation: 32 source/index-feature cases and 48 AF3/OF3 GPU refolds. Model checkpoints, weights, and AF2 artifacts are unchanged.
3 days ago
Upload openfold3/runtime/of3_af3_refolding_env-cuda13.sqsh.sha256 with huggingface_hub
Adds openfold3/runtime/of3_af3_refolding_env.sif, the Apptainer environment for the OpenFold3 refolding oracle. Its SHA-256 (100679cc...) is the digest scripts/download_example_data.sh already pins, but the bucket URL that script curls now returns 404, so the documented setup path is broken; hosting it here restores it. Removes source/, since the code lives in the project repository and model repositories conventionally link to it rather than vendoring a tarball.
Remove the unreferenced OpenFold3 apptainer image
Nothing fetches this image. scripts/download_example_data.sh pulls the refolding runtime from the public bucket under a different name (af3-open-8d36011.sif), and no source file references openfold3-36fad16.sif. The ported weights under openfold3/weights/ are kept: those are the part the setup script downloads from this repository, and they are runtime independent, so they serve an apptainer or a docker refolding environment equally.
