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Parent(s):
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Delete scripts
Browse files- scripts/backtest_sites.py +0 -539
- scripts/backtest_uk_gsp.py +0 -431
- scripts/checkpoint_to_huggingface.py +0 -83
- scripts/save_concurrent_samples.py +0 -189
- scripts/save_samples.py +0 -218
scripts/backtest_sites.py
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"""
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A script to run backtest for PVNet for specific sites
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Use:
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- This script uses hydra to construct the config, just like in `run.py`. So you need to make sure
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that the data config is set up appropriate for the model being run in this script
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- The PVNet model checkpoint; the time range over which to make predictions are made;
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the site ids to produce forecasts for and the output directory where the results
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near the top of the script as hard coded user variables. These should be changed.
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```
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python scripts/backtest_sites.py
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```
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"""
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try:
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import torch.multiprocessing as mp
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mp.set_start_method("spawn", force=True)
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mp.set_sharing_strategy("file_system")
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except RuntimeError:
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pass
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import json
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import logging
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import os
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import sys
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import hydra
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import numpy as np
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import pandas as pd
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import torch
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import xarray as xr
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from huggingface_hub import hf_hub_download
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from huggingface_hub.constants import CONFIG_NAME, PYTORCH_WEIGHTS_NAME
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from ocf_data_sampler.sample.base import batch_to_tensor, copy_batch_to_device
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from ocf_datapipes.batch import (
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BatchKey,
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NumpyBatch,
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stack_np_examples_into_batch,
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)
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from ocf_datapipes.config.load import load_yaml_configuration
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from ocf_datapipes.load.pv.pv import OpenPVFromNetCDFIterDataPipe
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from ocf_datapipes.training.common import create_t0_and_loc_datapipes
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from ocf_datapipes.training.pvnet_site import (
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DictDatasetIterDataPipe,
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_get_datapipes_dict,
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construct_sliced_data_pipeline,
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split_dataset_dict_dp,
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)
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from ocf_datapipes.utils.consts import ELEVATION_MEAN, ELEVATION_STD
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from omegaconf import DictConfig
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from torch.utils.data import DataLoader, IterDataPipe, functional_datapipe
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from torch.utils.data.datapipes.iter import IterableWrapper
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from tqdm import tqdm
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from pvnet.load_model import get_model_from_checkpoints
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from pvnet.utils import SiteLocationLookup
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# ------------------------------------------------------------------
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# USER CONFIGURED VARIABLES TO RUN THE SCRIPT
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# Directory path to save results
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output_dir = "PLACEHOLDER"
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# Local directory to load the PVNet checkpoint from. By default this should pull the best performing
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# checkpoint on the val set
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model_chckpoint_dir = "PLACEHOLDER"
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hf_revision = None
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hf_token = None
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hf_model_id = None
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# Forecasts will be made for all available init times between these
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start_datetime = "2022-05-08 00:00"
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end_datetime = "2022-05-08 00:30"
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# ------------------------------------------------------------------
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# SET UP LOGGING
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logger = logging.getLogger(__name__)
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logging.basicConfig(stream=sys.stdout, level=logging.INFO)
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# ------------------------------------------------------------------
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# DERIVED VARIABLES
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# This will run on GPU if it exists
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device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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# ------------------------------------------------------------------
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# GLOBAL VARIABLES
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# The frequency of the pv site data
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FREQ_MINS = 30
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# When sun as elevation below this, the forecast is set to zero
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MIN_DAY_ELEVATION = 0
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# Add all pv site ids here that you wish to produce forecasts for
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ALL_SITE_IDS = []
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# Need to be in ascending order
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ALL_SITE_IDS.sort()
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# ------------------------------------------------------------------
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# FUNCTIONS
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@functional_datapipe("pad_forward_pv")
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class PadForwardPVIterDataPipe(IterDataPipe):
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"""
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Pads forecast pv.
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Sun position is calculated based off of pv time index
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and for t0's close to end of pv data can have wrong shape as pv starts
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to run out of data to slice for the forecast part.
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"""
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def __init__(
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self,
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pv_dp: IterDataPipe,
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forecast_duration: np.timedelta64,
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history_duration: np.timedelta64,
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time_resolution_minutes: np.timedelta64,
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):
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"""Init"""
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super().__init__()
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self.pv_dp = pv_dp
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self.forecast_duration = forecast_duration
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self.history_duration = history_duration
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self.time_resolution_minutes = time_resolution_minutes
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self.min_seq_length = history_duration // time_resolution_minutes
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def __iter__(self):
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"""Iter"""
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for xr_data in self.pv_dp:
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t_end = (
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xr_data.time_utc.data[0]
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+ self.history_duration
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+ self.forecast_duration
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+ self.time_resolution_minutes
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)
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time_idx = np.arange(xr_data.time_utc.data[0], t_end, self.time_resolution_minutes)
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if len(xr_data.time_utc.data) < self.min_seq_length:
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raise ValueError("Not enough PV data to predict")
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yield xr_data.reindex(time_utc=time_idx, fill_value=-1)
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def load_model_from_hf(model_id: str, revision: str, token: str):
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"""
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Loads model from HuggingFace
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"""
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model_file = hf_hub_download(
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repo_id=model_id,
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filename=PYTORCH_WEIGHTS_NAME,
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revision=revision,
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token=token,
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)
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# load config file
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config_file = hf_hub_download(
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repo_id=model_id,
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filename=CONFIG_NAME,
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revision=revision,
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token=token,
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)
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with open(config_file, "r", encoding="utf-8") as f:
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config = json.load(f)
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model = hydra.utils.instantiate(config)
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state_dict = torch.load(model_file, map_location=torch.device("cuda"))
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model.load_state_dict(state_dict) # type: ignore
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model.eval() # type: ignore
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return model
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def preds_to_dataarray(preds, model, valid_times, site_ids):
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"""Put numpy array of predictions into a dataarray"""
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if model.use_quantile_regression:
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output_labels = [f"forecast_mw_plevel_{int(q*100):02}" for q in model.output_quantiles]
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output_labels[output_labels.index("forecast_mw_plevel_50")] = "forecast_mw"
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else:
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output_labels = ["forecast_mw"]
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preds = preds[..., np.newaxis]
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da = xr.DataArray(
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data=preds,
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dims=["pv_system_id", "target_datetime_utc", "output_label"],
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coords=dict(
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pv_system_id=site_ids,
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target_datetime_utc=valid_times,
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output_label=output_labels,
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),
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)
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return da
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# TODO change this to load the PV sites data (metadata?)
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def get_sites_ds(config_path: str) -> xr.Dataset:
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"""Load site data from the path in the data config.
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Args:
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config_path: Path to the data configuration file
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Returns:
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xarray.Dataset of PVLive truths and capacities
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"""
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config = load_yaml_configuration(config_path)
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site_datapipe = OpenPVFromNetCDFIterDataPipe(pv=config.input_data.pv)
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ds_sites = next(iter(site_datapipe))
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return ds_sites
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def get_available_t0_times(start_datetime, end_datetime, config_path):
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"""Filter a list of t0 init-times to those for which all required input data is available.
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Args:
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start_datetime: First potential t0 time
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end_datetime: Last potential t0 time
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config_path: Path to data config file
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Returns:
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pandas.DatetimeIndex of the init-times available for required inputs
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"""
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start_datetime = pd.Timestamp(start_datetime)
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end_datetime = pd.Timestamp(end_datetime)
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# Open all the input data so we can check what of the potential data init times we have input
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# data for
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datapipes_dict = _get_datapipes_dict(config_path, production=False)
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# Pop out the config file
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config = datapipes_dict.pop("config")
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# We are going to abuse the `create_t0_and_loc_datapipes()` function to find the init-times in
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# potential_init_times which we have input data for. To do this, we will feed in some fake site
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# data which has the potential_init_times as timestamps. This is a bit hacky but works for now
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# Set up init-times we would like to make predictions for
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potential_init_times = pd.date_range(start_datetime, end_datetime, freq=f"{FREQ_MINS}min")
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# We buffer the potential init-times so that we don't lose any init-times from the
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# start and end. Again this is a hacky step
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history_duration = pd.Timedelta(config.input_data.pv.history_minutes, "min")
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forecast_duration = pd.Timedelta(config.input_data.pv.forecast_minutes, "min")
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buffered_potential_init_times = pd.date_range(
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start_datetime - history_duration, end_datetime + forecast_duration, freq=f"{FREQ_MINS}min"
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)
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ds_fake_site = (
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buffered_potential_init_times.to_frame().to_xarray().rename({"index": "time_utc"})
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)
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ds_fake_site = ds_fake_site.rename({0: "site_pv_power_mw"})
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ds_fake_site = ds_fake_site.expand_dims("pv_system_id", axis=1)
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ds_fake_site = ds_fake_site.assign_coords(
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pv_system_id=[0],
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latitude=("pv_system_id", [0]),
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longitude=("pv_system_id", [0]),
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)
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ds_fake_site = ds_fake_site.site_pv_power_mw.astype(float) * 1e-18
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# Overwrite the site data which is already in the datapipes dict
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datapipes_dict["pv"] = IterableWrapper([ds_fake_site])
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# Use create_t0_and_loc_datapipes to get datapipe of init-times
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location_pipe, t0_datapipe = create_t0_and_loc_datapipes(
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datapipes_dict,
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configuration=config,
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key_for_t0="pv",
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shuffle=False,
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)
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# Create a full list of available init-times. Note that we need to loop over the t0s AND
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# locations to avoid the torch datapipes buffer overflow but we don't actually use the location
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available_init_times = [t0 for _, t0 in zip(location_pipe, t0_datapipe)]
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available_init_times = pd.to_datetime(available_init_times)
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logger.info(
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f"{len(available_init_times)} out of {len(potential_init_times)} "
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"requested init-times have required input data"
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)
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return available_init_times
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def get_loctimes_datapipes(config_path):
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"""Create location and init-time datapipes
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Args:
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config_path: Path to data config file
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Returns:
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tuple: A tuple of datapipes
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- Datapipe yielding locations
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- Datapipe yielding init-times
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"""
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# Set up ID location query object
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ds_sites = get_sites_ds(config_path)
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site_id_to_loc = SiteLocationLookup(ds_sites.longitude, ds_sites.latitude)
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# Filter the init-times to times we have all input data for
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available_target_times = get_available_t0_times(
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start_datetime,
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end_datetime,
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config_path,
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)
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num_t0s = len(available_target_times)
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# Save the init-times which predictions are being made for. This is really helpful to check
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# whilst the backtest is running since it takes a long time. This lets you see what init-times
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# the backtest will end up producing
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available_target_times.to_frame().to_csv(f"{output_dir}/t0_times.csv")
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# Cycle the site locations
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location_pipe = IterableWrapper([[site_id_to_loc(site_id) for site_id in ALL_SITE_IDS]]).repeat(
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num_t0s
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)
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# Shard and then unbatch the locations so that each worker will generate all samples for all
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# sites and for a single init-time
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location_pipe = location_pipe.sharding_filter()
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location_pipe = location_pipe.unbatch(
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unbatch_level=1
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) # might not need this part since the site datapipe is creating examples
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# Create times datapipe so each worker receives
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# len(ALL_SITE_IDS) copies of the same datetime for its batch
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t0_datapipe = IterableWrapper(
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[[t0 for site_id in ALL_SITE_IDS] for t0 in available_target_times]
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)
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t0_datapipe = t0_datapipe.sharding_filter()
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t0_datapipe = t0_datapipe.unbatch(
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unbatch_level=1
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) # might not need this part since the site datapipe is creating examples
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t0_datapipe = t0_datapipe.set_length(num_t0s * len(ALL_SITE_IDS))
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location_pipe = location_pipe.set_length(num_t0s * len(ALL_SITE_IDS))
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return location_pipe, t0_datapipe
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class ModelPipe:
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"""A class to conveniently make and process predictions from batches"""
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def __init__(self, model, ds_site: xr.Dataset):
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"""A class to conveniently make and process predictions from batches
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Args:
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model: PVNet site level model
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ds_site:xarray dataset of pv site true values and capacities
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"""
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self.model = model
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self.ds_site = ds_site
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def predict_batch(self, batch: NumpyBatch) -> xr.Dataset:
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"""Run the batch through the model and compile the predictions into an xarray DataArray
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Args:
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batch: A batch of samples with inputs for each site for the same init-time
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Returns:
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xarray.Dataset of all site and national forecasts for the batch
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"""
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# Unpack some variables from the batch
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id0 = batch[BatchKey.pv_t0_idx]
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| 379 |
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t0 = batch[BatchKey.pv_time_utc].cpu().numpy().astype("datetime64[s]")[0, id0]
|
| 380 |
-
n_valid_times = len(batch[BatchKey.pv_time_utc][0, id0 + 1 :])
|
| 381 |
-
model = self.model
|
| 382 |
-
|
| 383 |
-
# Get valid times for this forecast
|
| 384 |
-
valid_times = pd.to_datetime(
|
| 385 |
-
[t0 + np.timedelta64((i + 1) * FREQ_MINS, "m") for i in range(n_valid_times)]
|
| 386 |
-
)
|
| 387 |
-
|
| 388 |
-
# Get effective capacities for this forecast
|
| 389 |
-
site_capacities = self.ds_site.nominal_capacity_wp.values
|
| 390 |
-
# Get the solar elevations. We need to un-normalise these from the values in the batch
|
| 391 |
-
elevation = batch[BatchKey.pv_solar_elevation] * ELEVATION_STD + ELEVATION_MEAN
|
| 392 |
-
# We only need elevation mask for forecasted values, not history
|
| 393 |
-
elevation = elevation[:, id0 + 1 :]
|
| 394 |
-
|
| 395 |
-
# Make mask dataset for sundown
|
| 396 |
-
da_sundown_mask = xr.DataArray(
|
| 397 |
-
data=elevation < MIN_DAY_ELEVATION,
|
| 398 |
-
dims=["pv_system_id", "target_datetime_utc"],
|
| 399 |
-
coords=dict(
|
| 400 |
-
pv_system_id=ALL_SITE_IDS,
|
| 401 |
-
target_datetime_utc=valid_times,
|
| 402 |
-
),
|
| 403 |
-
)
|
| 404 |
-
|
| 405 |
-
with torch.no_grad():
|
| 406 |
-
# Run batch through model to get 0-1 predictions for all sites
|
| 407 |
-
device_batch = copy_batch_to_device(batch_to_tensor(batch), device)
|
| 408 |
-
y_normed_site = model(device_batch).detach().cpu().numpy()
|
| 409 |
-
da_normed_site = preds_to_dataarray(y_normed_site, model, valid_times, ALL_SITE_IDS)
|
| 410 |
-
|
| 411 |
-
# Multiply normalised forecasts by capacities and clip negatives
|
| 412 |
-
da_abs_site = da_normed_site.clip(0, None) * site_capacities[:, None, None]
|
| 413 |
-
|
| 414 |
-
# Apply sundown mask
|
| 415 |
-
da_abs_site = da_abs_site.where(~da_sundown_mask).fillna(0.0)
|
| 416 |
-
|
| 417 |
-
da_abs_site = da_abs_site.expand_dims(dim="init_time_utc", axis=0).assign_coords(
|
| 418 |
-
init_time_utc=np.array([t0], dtype="datetime64[ns]")
|
| 419 |
-
)
|
| 420 |
-
|
| 421 |
-
return da_abs_site
|
| 422 |
-
|
| 423 |
-
|
| 424 |
-
def get_datapipe(config_path: str) -> NumpyBatch:
|
| 425 |
-
"""Construct datapipe yielding batches of concurrent samples for all sites
|
| 426 |
-
|
| 427 |
-
Args:
|
| 428 |
-
config_path: Path to the data configuration file
|
| 429 |
-
|
| 430 |
-
Returns:
|
| 431 |
-
NumpyBatch: Concurrent batch of samples for each site
|
| 432 |
-
"""
|
| 433 |
-
|
| 434 |
-
# Construct location and init-time datapipes
|
| 435 |
-
location_pipe, t0_datapipe = get_loctimes_datapipes(config_path)
|
| 436 |
-
|
| 437 |
-
# Get the number of init-times
|
| 438 |
-
# num_batches = len(t0_datapipe)
|
| 439 |
-
num_batches = len(t0_datapipe) // len(ALL_SITE_IDS)
|
| 440 |
-
# Construct sample datapipes
|
| 441 |
-
data_pipeline = construct_sliced_data_pipeline(
|
| 442 |
-
config_path,
|
| 443 |
-
location_pipe,
|
| 444 |
-
t0_datapipe,
|
| 445 |
-
)
|
| 446 |
-
|
| 447 |
-
config = load_yaml_configuration(config_path)
|
| 448 |
-
data_pipeline["pv"] = data_pipeline["pv"].pad_forward_pv(
|
| 449 |
-
forecast_duration=np.timedelta64(config.input_data.pv.forecast_minutes, "m"),
|
| 450 |
-
history_duration=np.timedelta64(config.input_data.pv.history_minutes, "m"),
|
| 451 |
-
time_resolution_minutes=np.timedelta64(config.input_data.pv.time_resolution_minutes, "m"),
|
| 452 |
-
)
|
| 453 |
-
|
| 454 |
-
data_pipeline = DictDatasetIterDataPipe(
|
| 455 |
-
{k: v for k, v in data_pipeline.items() if k != "config"},
|
| 456 |
-
).map(split_dataset_dict_dp)
|
| 457 |
-
|
| 458 |
-
data_pipeline = data_pipeline.pvnet_site_convert_to_numpy_batch()
|
| 459 |
-
|
| 460 |
-
# Batch so that each worker returns a batch of all locations for a single init-time
|
| 461 |
-
# Also convert to tensor for model
|
| 462 |
-
data_pipeline = (
|
| 463 |
-
data_pipeline.batch(len(ALL_SITE_IDS))
|
| 464 |
-
.map(stack_np_examples_into_batch)
|
| 465 |
-
.map(batch_to_tensor)
|
| 466 |
-
)
|
| 467 |
-
data_pipeline = data_pipeline.set_length(num_batches)
|
| 468 |
-
|
| 469 |
-
return data_pipeline
|
| 470 |
-
|
| 471 |
-
|
| 472 |
-
@hydra.main(config_path="../configs", config_name="config.yaml", version_base="1.2")
|
| 473 |
-
def main(config: DictConfig):
|
| 474 |
-
"""Runs the backtest"""
|
| 475 |
-
|
| 476 |
-
dataloader_kwargs = dict(
|
| 477 |
-
shuffle=False,
|
| 478 |
-
batch_size=None,
|
| 479 |
-
sampler=None,
|
| 480 |
-
batch_sampler=None,
|
| 481 |
-
# Number of workers set in the config file
|
| 482 |
-
num_workers=config.datamodule.num_workers,
|
| 483 |
-
collate_fn=None,
|
| 484 |
-
pin_memory=False,
|
| 485 |
-
drop_last=False,
|
| 486 |
-
timeout=0,
|
| 487 |
-
worker_init_fn=None,
|
| 488 |
-
prefetch_factor=config.datamodule.prefetch_factor,
|
| 489 |
-
persistent_workers=False,
|
| 490 |
-
)
|
| 491 |
-
|
| 492 |
-
# Set up output dir
|
| 493 |
-
os.makedirs(output_dir)
|
| 494 |
-
|
| 495 |
-
# Create concurrent batch datapipe
|
| 496 |
-
# Each batch includes a sample for each of the n sites for a single init-time
|
| 497 |
-
batch_pipe = get_datapipe(config.datamodule.configuration)
|
| 498 |
-
num_batches = len(batch_pipe)
|
| 499 |
-
# Load the site data as an xarray object
|
| 500 |
-
ds_site = get_sites_ds(config.datamodule.configuration)
|
| 501 |
-
# Create a dataloader for the concurrent batches and use multiprocessing
|
| 502 |
-
dataloader = DataLoader(batch_pipe, **dataloader_kwargs)
|
| 503 |
-
# Load the PVNet model
|
| 504 |
-
if model_chckpoint_dir:
|
| 505 |
-
model, *_ = get_model_from_checkpoints([model_chckpoint_dir], val_best=True)
|
| 506 |
-
elif hf_model_id:
|
| 507 |
-
model = load_model_from_hf(hf_model_id, hf_revision, hf_token)
|
| 508 |
-
else:
|
| 509 |
-
raise ValueError("Provide a model checkpoint or a HuggingFace model")
|
| 510 |
-
|
| 511 |
-
model = model.eval().to(device)
|
| 512 |
-
|
| 513 |
-
# Create object to make predictions for each input batch
|
| 514 |
-
model_pipe = ModelPipe(model, ds_site)
|
| 515 |
-
# Loop through the batches
|
| 516 |
-
pbar = tqdm(total=num_batches)
|
| 517 |
-
for i, batch in zip(range(num_batches), dataloader):
|
| 518 |
-
try:
|
| 519 |
-
# Make predictions for the init-time
|
| 520 |
-
ds_abs_all = model_pipe.predict_batch(batch)
|
| 521 |
-
|
| 522 |
-
t0 = ds_abs_all.init_time_utc.values[0]
|
| 523 |
-
|
| 524 |
-
# Save the predictions
|
| 525 |
-
filename = f"{output_dir}/{t0}.nc"
|
| 526 |
-
ds_abs_all.to_netcdf(filename)
|
| 527 |
-
|
| 528 |
-
pbar.update()
|
| 529 |
-
except Exception as e:
|
| 530 |
-
print(f"Exception {e} at batch {i}")
|
| 531 |
-
pass
|
| 532 |
-
|
| 533 |
-
# Close down
|
| 534 |
-
pbar.close()
|
| 535 |
-
del dataloader
|
| 536 |
-
|
| 537 |
-
|
| 538 |
-
if __name__ == "__main__":
|
| 539 |
-
main()
|
|
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scripts/backtest_uk_gsp.py
DELETED
|
@@ -1,431 +0,0 @@
|
|
| 1 |
-
"""
|
| 2 |
-
A script to run backtest for PVNet and the summation model for UK regional and national
|
| 3 |
-
|
| 4 |
-
Use:
|
| 5 |
-
|
| 6 |
-
- This script uses hydra to construct the config, just like in `run.py`. So you need to make sure
|
| 7 |
-
that the data config is set up appropriate for the model being run in this script
|
| 8 |
-
- The PVNet and summation model checkpoints; the time range over which to make predictions are made;
|
| 9 |
-
and the output directory where the results near the top of the script as hard coded user
|
| 10 |
-
variables. These should be changed.
|
| 11 |
-
|
| 12 |
-
|
| 13 |
-
```
|
| 14 |
-
python backtest_uk_gsp.py
|
| 15 |
-
```
|
| 16 |
-
|
| 17 |
-
"""
|
| 18 |
-
|
| 19 |
-
try:
|
| 20 |
-
import torch.multiprocessing as mp
|
| 21 |
-
|
| 22 |
-
mp.set_start_method("spawn", force=True)
|
| 23 |
-
mp.set_sharing_strategy("file_system")
|
| 24 |
-
except RuntimeError:
|
| 25 |
-
pass
|
| 26 |
-
|
| 27 |
-
import logging
|
| 28 |
-
import os
|
| 29 |
-
import sys
|
| 30 |
-
|
| 31 |
-
import hydra
|
| 32 |
-
import numpy as np
|
| 33 |
-
import pandas as pd
|
| 34 |
-
import torch
|
| 35 |
-
import xarray as xr
|
| 36 |
-
from ocf_data_sampler.sample.base import batch_to_tensor, copy_batch_to_device
|
| 37 |
-
from ocf_datapipes.batch import (
|
| 38 |
-
BatchKey,
|
| 39 |
-
NumpyBatch,
|
| 40 |
-
)
|
| 41 |
-
from ocf_datapipes.config.load import load_yaml_configuration
|
| 42 |
-
from ocf_datapipes.load import OpenGSP
|
| 43 |
-
from ocf_datapipes.training.common import _get_datapipes_dict
|
| 44 |
-
from ocf_datapipes.training.pvnet_all_gsp import construct_sliced_data_pipeline, create_t0_datapipe
|
| 45 |
-
from ocf_datapipes.utils.consts import ELEVATION_MEAN, ELEVATION_STD
|
| 46 |
-
from omegaconf import DictConfig
|
| 47 |
-
|
| 48 |
-
# TODO: Having this script rely on pvnet_app sets up a circular dependency. The function
|
| 49 |
-
# `preds_to_dataarray()` should probably be moved here
|
| 50 |
-
from pvnet_app.utils import preds_to_dataarray
|
| 51 |
-
from torch.utils.data import DataLoader
|
| 52 |
-
from torch.utils.data.datapipes.iter import IterableWrapper
|
| 53 |
-
from tqdm import tqdm
|
| 54 |
-
|
| 55 |
-
from pvnet.load_model import get_model_from_checkpoints
|
| 56 |
-
|
| 57 |
-
# ------------------------------------------------------------------
|
| 58 |
-
# USER CONFIGURED VARIABLES
|
| 59 |
-
output_dir = "/mnt/disks/extra_batches/test_backtest"
|
| 60 |
-
|
| 61 |
-
# Local directory to load the PVNet checkpoint from. By default this should pull the best performing
|
| 62 |
-
# checkpoint on the val set
|
| 63 |
-
model_chckpoint_dir = "/home/jamesfulton/repos/PVNet/checkpoints/q911tei5"
|
| 64 |
-
|
| 65 |
-
# Local directory to load the summation model checkpoint from. By default this should pull the best
|
| 66 |
-
# performing checkpoint on the val set. If set to None a simple sum is used instead
|
| 67 |
-
summation_chckpoint_dir = (
|
| 68 |
-
"/home/jamesfulton/repos/PVNet_summation/checkpoints/pvnet_summation/73oa4w9t"
|
| 69 |
-
)
|
| 70 |
-
|
| 71 |
-
# Forecasts will be made for all available init times between these
|
| 72 |
-
start_datetime = "2022-05-08 00:00"
|
| 73 |
-
end_datetime = "2022-05-08 00:30"
|
| 74 |
-
|
| 75 |
-
# ------------------------------------------------------------------
|
| 76 |
-
# SET UP LOGGING
|
| 77 |
-
|
| 78 |
-
logger = logging.getLogger(__name__)
|
| 79 |
-
logging.basicConfig(stream=sys.stdout, level=logging.INFO)
|
| 80 |
-
|
| 81 |
-
# ------------------------------------------------------------------
|
| 82 |
-
# DERIVED VARIABLES
|
| 83 |
-
|
| 84 |
-
# This will run on GPU if it exists
|
| 85 |
-
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
|
| 86 |
-
|
| 87 |
-
# ------------------------------------------------------------------
|
| 88 |
-
# GLOBAL VARIABLES
|
| 89 |
-
|
| 90 |
-
# The frequency of the GSP data
|
| 91 |
-
FREQ_MINS = 30
|
| 92 |
-
|
| 93 |
-
# When sun as elevation below this, the forecast is set to zero
|
| 94 |
-
MIN_DAY_ELEVATION = 0
|
| 95 |
-
|
| 96 |
-
# All regional GSP IDs - not including national which is treated separately
|
| 97 |
-
ALL_GSP_IDS = np.arange(1, 318)
|
| 98 |
-
|
| 99 |
-
# ------------------------------------------------------------------
|
| 100 |
-
# FUNCTIONS
|
| 101 |
-
|
| 102 |
-
|
| 103 |
-
def get_gsp_ds(config_path: str) -> xr.Dataset:
|
| 104 |
-
"""Load GSP data from the path in the data config.
|
| 105 |
-
|
| 106 |
-
Args:
|
| 107 |
-
config_path: Path to the data configuration file
|
| 108 |
-
|
| 109 |
-
Returns:
|
| 110 |
-
xarray.Dataset of PVLive truths and capacities
|
| 111 |
-
"""
|
| 112 |
-
|
| 113 |
-
config = load_yaml_configuration(config_path)
|
| 114 |
-
gsp_datapipe = OpenGSP(gsp_pv_power_zarr_path=config.input_data.gsp.gsp_zarr_path)
|
| 115 |
-
ds_gsp = next(iter(gsp_datapipe))
|
| 116 |
-
|
| 117 |
-
return ds_gsp
|
| 118 |
-
|
| 119 |
-
|
| 120 |
-
def get_available_t0_times(start_datetime, end_datetime, config_path):
|
| 121 |
-
"""Filter a list of t0 init-times to those for which all required input data is available.
|
| 122 |
-
|
| 123 |
-
Args:
|
| 124 |
-
start_datetime: First potential t0 time
|
| 125 |
-
end_datetime: Last potential t0 time
|
| 126 |
-
config_path: Path to data config file
|
| 127 |
-
|
| 128 |
-
Returns:
|
| 129 |
-
pandas.DatetimeIndex of the init-times available for required inputs
|
| 130 |
-
"""
|
| 131 |
-
|
| 132 |
-
start_datetime = pd.Timestamp(start_datetime)
|
| 133 |
-
end_datetime = pd.Timestamp(end_datetime)
|
| 134 |
-
# Open all the input data so we can check what of the potential data init times we have input
|
| 135 |
-
# data for
|
| 136 |
-
datapipes_dict = _get_datapipes_dict(config_path, production=False)
|
| 137 |
-
|
| 138 |
-
# Pop out the config file
|
| 139 |
-
config = datapipes_dict.pop("config")
|
| 140 |
-
|
| 141 |
-
# We are going to abuse the `create_t0_datapipe()` function to find the init-times in
|
| 142 |
-
# potential_init_times which we have input data for. To do this, we will feed in some fake GSP
|
| 143 |
-
# data which has the potential_init_times as timestamps. This is a bit hacky but works for now
|
| 144 |
-
|
| 145 |
-
# Set up init-times we would like to make predictions for
|
| 146 |
-
potential_init_times = pd.date_range(start_datetime, end_datetime, freq=f"{FREQ_MINS}min")
|
| 147 |
-
|
| 148 |
-
# We buffer the potential init-times so that we don't lose any init-times from the
|
| 149 |
-
# start and end. Again this is a hacky step
|
| 150 |
-
history_duration = pd.Timedelta(config.input_data.gsp.history_minutes, "min")
|
| 151 |
-
forecast_duration = pd.Timedelta(config.input_data.gsp.forecast_minutes, "min")
|
| 152 |
-
buffered_potential_init_times = pd.date_range(
|
| 153 |
-
start_datetime - history_duration, end_datetime + forecast_duration, freq=f"{FREQ_MINS}min"
|
| 154 |
-
)
|
| 155 |
-
|
| 156 |
-
ds_fake_gsp = buffered_potential_init_times.to_frame().to_xarray().rename({"index": "time_utc"})
|
| 157 |
-
ds_fake_gsp = ds_fake_gsp.rename({0: "gsp_pv_power_mw"})
|
| 158 |
-
ds_fake_gsp = ds_fake_gsp.expand_dims("gsp_id", axis=1)
|
| 159 |
-
ds_fake_gsp = ds_fake_gsp.assign_coords(
|
| 160 |
-
gsp_id=[0],
|
| 161 |
-
x_osgb=("gsp_id", [0]),
|
| 162 |
-
y_osgb=("gsp_id", [0]),
|
| 163 |
-
)
|
| 164 |
-
ds_fake_gsp = ds_fake_gsp.gsp_pv_power_mw.astype(float) * 1e-18
|
| 165 |
-
|
| 166 |
-
# Overwrite the GSP data which is already in the datapipes dict
|
| 167 |
-
datapipes_dict["gsp"] = IterableWrapper([ds_fake_gsp])
|
| 168 |
-
|
| 169 |
-
# Use create_t0_datapipe to get datapipe of init-times
|
| 170 |
-
t0_datapipe = create_t0_datapipe(
|
| 171 |
-
datapipes_dict,
|
| 172 |
-
configuration=config,
|
| 173 |
-
shuffle=False,
|
| 174 |
-
)
|
| 175 |
-
|
| 176 |
-
# Create a full list of available init-times
|
| 177 |
-
available_init_times = pd.to_datetime([t0 for t0 in t0_datapipe])
|
| 178 |
-
|
| 179 |
-
logger.info(
|
| 180 |
-
f"{len(available_init_times)} out of {len(potential_init_times)} "
|
| 181 |
-
"requested init-times have required input data"
|
| 182 |
-
)
|
| 183 |
-
|
| 184 |
-
return available_init_times
|
| 185 |
-
|
| 186 |
-
|
| 187 |
-
def get_times_datapipe(config_path):
|
| 188 |
-
"""Create init-time datapipe
|
| 189 |
-
|
| 190 |
-
Args:
|
| 191 |
-
config_path: Path to data config file
|
| 192 |
-
|
| 193 |
-
Returns:
|
| 194 |
-
Datapipe: A Datapipe yielding init-times
|
| 195 |
-
"""
|
| 196 |
-
|
| 197 |
-
# Filter the init-times to times we have all input data for
|
| 198 |
-
available_target_times = get_available_t0_times(
|
| 199 |
-
start_datetime,
|
| 200 |
-
end_datetime,
|
| 201 |
-
config_path,
|
| 202 |
-
)
|
| 203 |
-
num_t0s = len(available_target_times)
|
| 204 |
-
|
| 205 |
-
# Save the init-times which predictions are being made for. This is really helpful to check
|
| 206 |
-
# whilst the backtest is running since it takes a long time. This lets you see what init-times
|
| 207 |
-
# the backtest will end up producing
|
| 208 |
-
available_target_times.to_frame().to_csv(f"{output_dir}/t0_times.csv")
|
| 209 |
-
|
| 210 |
-
# Create times datapipe so each worker receives 317 copies of the same datetime for its batch
|
| 211 |
-
t0_datapipe = IterableWrapper(available_target_times)
|
| 212 |
-
t0_datapipe = t0_datapipe.sharding_filter()
|
| 213 |
-
|
| 214 |
-
t0_datapipe = t0_datapipe.set_length(num_t0s)
|
| 215 |
-
|
| 216 |
-
return t0_datapipe
|
| 217 |
-
|
| 218 |
-
|
| 219 |
-
class ModelPipe:
|
| 220 |
-
"""A class to conveniently make and process predictions from batches"""
|
| 221 |
-
|
| 222 |
-
def __init__(self, model, summation_model, ds_gsp: xr.Dataset):
|
| 223 |
-
"""A class to conveniently make and process predictions from batches
|
| 224 |
-
|
| 225 |
-
Args:
|
| 226 |
-
model: PVNet GSP level model
|
| 227 |
-
summation_model: Summation model to make national forecast from GSP level forecasts
|
| 228 |
-
ds_gsp:xarray dataset of PVLive true values and capacities
|
| 229 |
-
"""
|
| 230 |
-
self.model = model
|
| 231 |
-
self.summation_model = summation_model
|
| 232 |
-
self.ds_gsp = ds_gsp
|
| 233 |
-
|
| 234 |
-
def predict_batch(self, batch: NumpyBatch) -> xr.Dataset:
|
| 235 |
-
"""Run the batch through the model and compile the predictions into an xarray DataArray
|
| 236 |
-
|
| 237 |
-
Args:
|
| 238 |
-
batch: A batch of samples with inputs for each GSP for the same init-time
|
| 239 |
-
|
| 240 |
-
Returns:
|
| 241 |
-
xarray.Dataset of all GSP and national forecasts for the batch
|
| 242 |
-
"""
|
| 243 |
-
|
| 244 |
-
# Unpack some variables from the batch
|
| 245 |
-
id0 = batch[BatchKey.gsp_t0_idx]
|
| 246 |
-
t0 = batch[BatchKey.gsp_time_utc].cpu().numpy().astype("datetime64[s]")[0, id0]
|
| 247 |
-
n_valid_times = len(batch[BatchKey.gsp_time_utc][0, id0 + 1 :])
|
| 248 |
-
ds_gsp = self.ds_gsp
|
| 249 |
-
model = self.model
|
| 250 |
-
summation_model = self.summation_model
|
| 251 |
-
|
| 252 |
-
# Get valid times for this forecast
|
| 253 |
-
valid_times = pd.to_datetime(
|
| 254 |
-
[t0 + np.timedelta64((i + 1) * FREQ_MINS, "m") for i in range(n_valid_times)]
|
| 255 |
-
)
|
| 256 |
-
|
| 257 |
-
# Get effective capacities for this forecast
|
| 258 |
-
gsp_capacities = ds_gsp.effective_capacity_mwp.sel(
|
| 259 |
-
time_utc=t0, gsp_id=slice(1, None)
|
| 260 |
-
).values
|
| 261 |
-
national_capacity = ds_gsp.effective_capacity_mwp.sel(time_utc=t0, gsp_id=0).item()
|
| 262 |
-
|
| 263 |
-
# Get the solar elevations. We need to un-normalise these from the values in the batch
|
| 264 |
-
elevation = batch[BatchKey.gsp_solar_elevation] * ELEVATION_STD + ELEVATION_MEAN
|
| 265 |
-
# We only need elevation mask for forecasted values, not history
|
| 266 |
-
elevation = elevation[:, id0 + 1 :]
|
| 267 |
-
|
| 268 |
-
# Make mask dataset for sundown
|
| 269 |
-
da_sundown_mask = xr.DataArray(
|
| 270 |
-
data=elevation < MIN_DAY_ELEVATION,
|
| 271 |
-
dims=["gsp_id", "target_datetime_utc"],
|
| 272 |
-
coords=dict(
|
| 273 |
-
gsp_id=ALL_GSP_IDS,
|
| 274 |
-
target_datetime_utc=valid_times,
|
| 275 |
-
),
|
| 276 |
-
)
|
| 277 |
-
|
| 278 |
-
with torch.no_grad():
|
| 279 |
-
# Run batch through model to get 0-1 predictions for all GSPs
|
| 280 |
-
device_batch = copy_batch_to_device(batch_to_tensor(batch), device)
|
| 281 |
-
y_normed_gsp = model(device_batch).detach().cpu().numpy()
|
| 282 |
-
|
| 283 |
-
da_normed_gsp = preds_to_dataarray(y_normed_gsp, model, valid_times, ALL_GSP_IDS)
|
| 284 |
-
|
| 285 |
-
# Multiply normalised forecasts by capacities and clip negatives
|
| 286 |
-
da_abs_gsp = da_normed_gsp.clip(0, None) * gsp_capacities[:, None, None]
|
| 287 |
-
|
| 288 |
-
# Apply sundown mask
|
| 289 |
-
da_abs_gsp = da_abs_gsp.where(~da_sundown_mask).fillna(0.0)
|
| 290 |
-
|
| 291 |
-
# Make national predictions using summation model
|
| 292 |
-
if summation_model is not None:
|
| 293 |
-
with torch.no_grad():
|
| 294 |
-
# Construct sample for the summation model
|
| 295 |
-
summation_inputs = {
|
| 296 |
-
"pvnet_outputs": torch.Tensor(y_normed_gsp[np.newaxis]).to(device),
|
| 297 |
-
"effective_capacity": (
|
| 298 |
-
torch.Tensor(gsp_capacities / national_capacity)
|
| 299 |
-
.to(device)
|
| 300 |
-
.unsqueeze(0)
|
| 301 |
-
.unsqueeze(-1)
|
| 302 |
-
),
|
| 303 |
-
}
|
| 304 |
-
|
| 305 |
-
# Run batch through the summation model
|
| 306 |
-
y_normed_national = (
|
| 307 |
-
summation_model(summation_inputs).detach().squeeze().cpu().numpy()
|
| 308 |
-
)
|
| 309 |
-
|
| 310 |
-
# Convert national predictions to DataArray
|
| 311 |
-
da_normed_national = preds_to_dataarray(
|
| 312 |
-
y_normed_national[np.newaxis], summation_model, valid_times, gsp_ids=[0]
|
| 313 |
-
)
|
| 314 |
-
|
| 315 |
-
# Multiply normalised forecasts by capacities and clip negatives
|
| 316 |
-
da_abs_national = da_normed_national.clip(0, None) * national_capacity
|
| 317 |
-
|
| 318 |
-
# Apply sundown mask - All GSPs must be masked to mask national
|
| 319 |
-
da_abs_national = da_abs_national.where(~da_sundown_mask.all(dim="gsp_id")).fillna(0.0)
|
| 320 |
-
|
| 321 |
-
# If no summation model, make national predictions using simple sum
|
| 322 |
-
else:
|
| 323 |
-
da_abs_national = (
|
| 324 |
-
da_abs_gsp.sum(dim="gsp_id")
|
| 325 |
-
.expand_dims(dim="gsp_id", axis=0)
|
| 326 |
-
.assign_coords(gsp_id=[0])
|
| 327 |
-
)
|
| 328 |
-
|
| 329 |
-
# Concat the regional GSP and national predictions
|
| 330 |
-
da_abs_all = xr.concat([da_abs_national, da_abs_gsp], dim="gsp_id")
|
| 331 |
-
ds_abs_all = da_abs_all.to_dataset(name="hindcast")
|
| 332 |
-
|
| 333 |
-
ds_abs_all = ds_abs_all.expand_dims(dim="init_time_utc", axis=0).assign_coords(
|
| 334 |
-
init_time_utc=[t0]
|
| 335 |
-
)
|
| 336 |
-
|
| 337 |
-
return ds_abs_all
|
| 338 |
-
|
| 339 |
-
|
| 340 |
-
def get_datapipe(config_path: str) -> NumpyBatch:
|
| 341 |
-
"""Construct datapipe yielding batches of concurrent samples for all GSPs
|
| 342 |
-
|
| 343 |
-
Args:
|
| 344 |
-
config_path: Path to the data configuration file
|
| 345 |
-
|
| 346 |
-
Returns:
|
| 347 |
-
NumpyBatch: Concurrent batch of samples for each GSP
|
| 348 |
-
"""
|
| 349 |
-
|
| 350 |
-
# Construct location and init-time datapipes
|
| 351 |
-
t0_datapipe = get_times_datapipe(config_path)
|
| 352 |
-
|
| 353 |
-
# Construct sample datapipes
|
| 354 |
-
data_pipeline = construct_sliced_data_pipeline(
|
| 355 |
-
config_path,
|
| 356 |
-
t0_datapipe,
|
| 357 |
-
)
|
| 358 |
-
|
| 359 |
-
# Convert to tensor for model
|
| 360 |
-
data_pipeline = data_pipeline.map(batch_to_tensor).set_length(len(t0_datapipe))
|
| 361 |
-
|
| 362 |
-
return data_pipeline
|
| 363 |
-
|
| 364 |
-
|
| 365 |
-
@hydra.main(config_path="../configs", config_name="config.yaml", version_base="1.2")
|
| 366 |
-
def main(config: DictConfig):
|
| 367 |
-
"""Runs the backtest"""
|
| 368 |
-
|
| 369 |
-
dataloader_kwargs = dict(
|
| 370 |
-
shuffle=False,
|
| 371 |
-
batch_size=None,
|
| 372 |
-
sampler=None,
|
| 373 |
-
batch_sampler=None,
|
| 374 |
-
# Number of workers set in the config file
|
| 375 |
-
num_workers=config.datamodule.num_workers,
|
| 376 |
-
collate_fn=None,
|
| 377 |
-
pin_memory=False,
|
| 378 |
-
drop_last=False,
|
| 379 |
-
timeout=0,
|
| 380 |
-
worker_init_fn=None,
|
| 381 |
-
prefetch_factor=config.datamodule.prefetch_factor,
|
| 382 |
-
persistent_workers=False,
|
| 383 |
-
)
|
| 384 |
-
|
| 385 |
-
# Set up output dir
|
| 386 |
-
os.makedirs(output_dir)
|
| 387 |
-
|
| 388 |
-
# Create concurrent batch datapipe
|
| 389 |
-
# Each batch includes a sample for each of the 317 GSPs for a single init-time
|
| 390 |
-
batch_pipe = get_datapipe(config.datamodule.configuration)
|
| 391 |
-
num_batches = len(batch_pipe)
|
| 392 |
-
|
| 393 |
-
# Load the GSP data as an xarray object
|
| 394 |
-
ds_gsp = get_gsp_ds(config.datamodule.configuration)
|
| 395 |
-
|
| 396 |
-
# Create a dataloader for the concurrent batches and use multiprocessing
|
| 397 |
-
dataloader = DataLoader(batch_pipe, **dataloader_kwargs)
|
| 398 |
-
|
| 399 |
-
# Load the PVNet model and summation model
|
| 400 |
-
model, *_ = get_model_from_checkpoints([model_chckpoint_dir], val_best=True)
|
| 401 |
-
model = model.eval().to(device)
|
| 402 |
-
if summation_chckpoint_dir is None:
|
| 403 |
-
summation_model = None
|
| 404 |
-
else:
|
| 405 |
-
summation_model, *_ = get_model_from_checkpoints([summation_chckpoint_dir], val_best=True)
|
| 406 |
-
summation_model = summation_model.eval().to(device)
|
| 407 |
-
|
| 408 |
-
# Create object to make predictions for each input batch
|
| 409 |
-
model_pipe = ModelPipe(model, summation_model, ds_gsp)
|
| 410 |
-
|
| 411 |
-
# Loop through the batches
|
| 412 |
-
pbar = tqdm(total=num_batches)
|
| 413 |
-
for i, batch in zip(range(num_batches), dataloader):
|
| 414 |
-
# Make predictions for the init-time
|
| 415 |
-
ds_abs_all = model_pipe.predict_batch(batch)
|
| 416 |
-
|
| 417 |
-
t0 = ds_abs_all.init_time_utc.values[0]
|
| 418 |
-
|
| 419 |
-
# Save the predictioons
|
| 420 |
-
filename = f"{output_dir}/{t0}.nc"
|
| 421 |
-
ds_abs_all.to_netcdf(filename)
|
| 422 |
-
|
| 423 |
-
pbar.update()
|
| 424 |
-
|
| 425 |
-
# Close down
|
| 426 |
-
pbar.close()
|
| 427 |
-
del dataloader
|
| 428 |
-
|
| 429 |
-
|
| 430 |
-
if __name__ == "__main__":
|
| 431 |
-
main()
|
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|
scripts/checkpoint_to_huggingface.py
DELETED
|
@@ -1,83 +0,0 @@
|
|
| 1 |
-
"""Command line tool to push locally save model checkpoints to huggingface
|
| 2 |
-
|
| 3 |
-
use:
|
| 4 |
-
python checkpoint_to_huggingface.py "path/to/model/checkpoints" \
|
| 5 |
-
--huggingface-repo="openclimatefix/pvnet_uk_region" \
|
| 6 |
-
--wandb-repo="openclimatefix/pvnet2.1" \
|
| 7 |
-
--local-path="~/tmp/this_model" \
|
| 8 |
-
--no-push-to-hub
|
| 9 |
-
"""
|
| 10 |
-
|
| 11 |
-
import tempfile
|
| 12 |
-
|
| 13 |
-
import typer
|
| 14 |
-
import wandb
|
| 15 |
-
|
| 16 |
-
from pvnet.load_model import get_model_from_checkpoints
|
| 17 |
-
|
| 18 |
-
app = typer.Typer(pretty_exceptions_show_locals=False)
|
| 19 |
-
|
| 20 |
-
@app.command()
|
| 21 |
-
def push_to_huggingface(
|
| 22 |
-
checkpoint_dir_paths: list[str],
|
| 23 |
-
huggingface_repo: str = "openclimatefix/pvnet_uk_region", # e.g. openclimatefix/windnet_india
|
| 24 |
-
wandb_repo: str = "openclimatefix/pvnet2.1",
|
| 25 |
-
val_best: bool = True,
|
| 26 |
-
wandb_ids: list[str] = [],
|
| 27 |
-
local_path: str = None,
|
| 28 |
-
push_to_hub: bool = True,
|
| 29 |
-
):
|
| 30 |
-
"""Push a local model to a huggingface model repo
|
| 31 |
-
|
| 32 |
-
Args:
|
| 33 |
-
checkpoint_dir_paths: Path(s) of the checkpoint directory(ies)
|
| 34 |
-
huggingface_repo: Name of the HuggingFace repo to push the model to
|
| 35 |
-
wandb_repo: Name of the wandb repo which has training logs
|
| 36 |
-
val_best: Use best model according to val loss, else last saved model
|
| 37 |
-
wandb_ids: The wandb ID code(s)
|
| 38 |
-
local_path: Where to save the local copy of the model
|
| 39 |
-
push_to_hub: Whether to push the model to the hub or just create local version.
|
| 40 |
-
"""
|
| 41 |
-
|
| 42 |
-
assert push_to_hub or local_path is not None
|
| 43 |
-
|
| 44 |
-
is_ensemble = len(checkpoint_dir_paths) > 1
|
| 45 |
-
|
| 46 |
-
# Check if checkpoint dir name is wandb run ID
|
| 47 |
-
if wandb_ids == []:
|
| 48 |
-
all_wandb_ids = [run.id for run in wandb.Api().runs(path=wandb_repo)]
|
| 49 |
-
for path in checkpoint_dir_paths:
|
| 50 |
-
dirname = path.split("/")[-1]
|
| 51 |
-
if dirname in all_wandb_ids:
|
| 52 |
-
wandb_ids.append(dirname)
|
| 53 |
-
else:
|
| 54 |
-
wandb_ids.append(None)
|
| 55 |
-
|
| 56 |
-
model, model_config, data_config = get_model_from_checkpoints(checkpoint_dir_paths, val_best)
|
| 57 |
-
|
| 58 |
-
if not is_ensemble:
|
| 59 |
-
wandb_ids = wandb_ids[0]
|
| 60 |
-
|
| 61 |
-
# Push to hub
|
| 62 |
-
if local_path is None:
|
| 63 |
-
temp_dir = tempfile.TemporaryDirectory()
|
| 64 |
-
model_output_dir = temp_dir.name
|
| 65 |
-
else:
|
| 66 |
-
model_output_dir = local_path
|
| 67 |
-
|
| 68 |
-
model.save_pretrained(
|
| 69 |
-
model_output_dir,
|
| 70 |
-
config=model_config,
|
| 71 |
-
data_config=data_config,
|
| 72 |
-
wandb_repo=wandb_repo,
|
| 73 |
-
wandb_ids=wandb_ids,
|
| 74 |
-
push_to_hub=push_to_hub,
|
| 75 |
-
repo_id=huggingface_repo if push_to_hub else None,
|
| 76 |
-
)
|
| 77 |
-
|
| 78 |
-
if local_path is None:
|
| 79 |
-
temp_dir.cleanup()
|
| 80 |
-
|
| 81 |
-
|
| 82 |
-
if __name__ == "__main__":
|
| 83 |
-
app()
|
|
|
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|
scripts/save_concurrent_samples.py
DELETED
|
@@ -1,189 +0,0 @@
|
|
| 1 |
-
"""
|
| 2 |
-
Constructs batches where each batch includes all GSPs and only a single timestamp.
|
| 3 |
-
|
| 4 |
-
Currently a slightly hacky implementation due to the way the configs are done. This script will use
|
| 5 |
-
the same config file currently set to train the model. In the datamodule config it is possible
|
| 6 |
-
to set the batch_output_dir and number of train/val batches, they can also be overriden in the
|
| 7 |
-
command as shown in the example below.
|
| 8 |
-
|
| 9 |
-
use:
|
| 10 |
-
```
|
| 11 |
-
python save_concurrent_samples.py \
|
| 12 |
-
+datamodule.sample_output_dir="/mnt/disks/concurrent_batches/concurrent_samples_sat_pred_test" \
|
| 13 |
-
+datamodule.num_train_samples=20 \
|
| 14 |
-
+datamodule.num_val_samples=20
|
| 15 |
-
```
|
| 16 |
-
|
| 17 |
-
"""
|
| 18 |
-
# Ensure this block of code runs only in the main process to avoid issues with worker processes.
|
| 19 |
-
if __name__ == "__main__":
|
| 20 |
-
import torch.multiprocessing as mp
|
| 21 |
-
|
| 22 |
-
# Set the start method for torch multiprocessing. Choose either "forkserver" or "spawn" to be
|
| 23 |
-
# compatible with dask's multiprocessing.
|
| 24 |
-
mp.set_start_method("forkserver")
|
| 25 |
-
|
| 26 |
-
# Set the sharing strategy to 'file_system' to handle file descriptor limitations. This is
|
| 27 |
-
# important because libraries like Zarr may open many files, which can exhaust the file
|
| 28 |
-
# descriptor limit if too many workers are used.
|
| 29 |
-
mp.set_sharing_strategy("file_system")
|
| 30 |
-
|
| 31 |
-
|
| 32 |
-
import logging
|
| 33 |
-
import os
|
| 34 |
-
import shutil
|
| 35 |
-
import sys
|
| 36 |
-
import warnings
|
| 37 |
-
|
| 38 |
-
import hydra
|
| 39 |
-
import numpy as np
|
| 40 |
-
import torch
|
| 41 |
-
from ocf_data_sampler.torch_datasets.datasets.pvnet_uk import PVNetUKConcurrentDataset
|
| 42 |
-
from omegaconf import DictConfig, OmegaConf
|
| 43 |
-
from sqlalchemy import exc as sa_exc
|
| 44 |
-
from torch.utils.data import DataLoader, Dataset
|
| 45 |
-
from tqdm import tqdm
|
| 46 |
-
|
| 47 |
-
from pvnet.utils import print_config
|
| 48 |
-
|
| 49 |
-
# ------- filter warning and set up config -------
|
| 50 |
-
|
| 51 |
-
warnings.filterwarnings("ignore", category=sa_exc.SAWarning)
|
| 52 |
-
|
| 53 |
-
logger = logging.getLogger(__name__)
|
| 54 |
-
|
| 55 |
-
logging.basicConfig(stream=sys.stdout, level=logging.ERROR)
|
| 56 |
-
|
| 57 |
-
# -------------------------------------------------
|
| 58 |
-
|
| 59 |
-
|
| 60 |
-
class SaveFuncFactory:
|
| 61 |
-
"""Factory for creating a function to save a sample to disk."""
|
| 62 |
-
|
| 63 |
-
def __init__(self, save_dir: str):
|
| 64 |
-
"""Factory for creating a function to save a sample to disk."""
|
| 65 |
-
self.save_dir = save_dir
|
| 66 |
-
|
| 67 |
-
def __call__(self, sample, sample_num: int):
|
| 68 |
-
"""Save a sample to disk"""
|
| 69 |
-
torch.save(sample, f"{self.save_dir}/{sample_num:08}.pt")
|
| 70 |
-
|
| 71 |
-
|
| 72 |
-
def save_samples_with_dataloader(
|
| 73 |
-
dataset: Dataset,
|
| 74 |
-
save_dir: str,
|
| 75 |
-
num_samples: int,
|
| 76 |
-
dataloader_kwargs: dict,
|
| 77 |
-
) -> None:
|
| 78 |
-
"""Save samples from a dataset using a dataloader."""
|
| 79 |
-
save_func = SaveFuncFactory(save_dir)
|
| 80 |
-
|
| 81 |
-
gsp_ids = np.array([loc.id for loc in dataset.locations])
|
| 82 |
-
|
| 83 |
-
dataloader = DataLoader(dataset, **dataloader_kwargs)
|
| 84 |
-
|
| 85 |
-
pbar = tqdm(total=num_samples)
|
| 86 |
-
for i, sample in zip(range(num_samples), dataloader):
|
| 87 |
-
check_sample(sample, gsp_ids)
|
| 88 |
-
save_func(sample, i)
|
| 89 |
-
pbar.update()
|
| 90 |
-
pbar.close()
|
| 91 |
-
|
| 92 |
-
|
| 93 |
-
def check_sample(sample, gsp_ids):
|
| 94 |
-
"""Check if sample is valid concurrent batch for all GSPs"""
|
| 95 |
-
# Check all GSP IDs are included and in correct order
|
| 96 |
-
assert (sample["gsp_id"].flatten().numpy() == gsp_ids).all()
|
| 97 |
-
# Check all times are the same
|
| 98 |
-
assert len(np.unique(sample["gsp_time_utc"][:, 0].numpy())) == 1
|
| 99 |
-
|
| 100 |
-
|
| 101 |
-
@hydra.main(config_path="../configs/", config_name="config.yaml", version_base="1.2")
|
| 102 |
-
def main(config: DictConfig) -> None:
|
| 103 |
-
"""Constructs and saves validation and training samples."""
|
| 104 |
-
config_dm = config.datamodule
|
| 105 |
-
|
| 106 |
-
print_config(config, resolve=False)
|
| 107 |
-
|
| 108 |
-
# Set up directory
|
| 109 |
-
os.makedirs(config_dm.sample_output_dir, exist_ok=False)
|
| 110 |
-
|
| 111 |
-
# Copy across configs which define the samples into the new sample directory
|
| 112 |
-
with open(f"{config_dm.sample_output_dir}/datamodule.yaml", "w") as f:
|
| 113 |
-
f.write(OmegaConf.to_yaml(config_dm))
|
| 114 |
-
|
| 115 |
-
shutil.copyfile(
|
| 116 |
-
config_dm.configuration, f"{config_dm.sample_output_dir}/data_configuration.yaml"
|
| 117 |
-
)
|
| 118 |
-
|
| 119 |
-
# Define the keywargs going into the train and val dataloaders
|
| 120 |
-
dataloader_kwargs = dict(
|
| 121 |
-
shuffle=True,
|
| 122 |
-
batch_size=None,
|
| 123 |
-
sampler=None,
|
| 124 |
-
batch_sampler=None,
|
| 125 |
-
num_workers=config_dm.num_workers,
|
| 126 |
-
collate_fn=None,
|
| 127 |
-
pin_memory=False, # Only using CPU to prepare samples so pinning is not beneficial
|
| 128 |
-
drop_last=False,
|
| 129 |
-
timeout=0,
|
| 130 |
-
worker_init_fn=None,
|
| 131 |
-
prefetch_factor=config_dm.prefetch_factor,
|
| 132 |
-
persistent_workers=False, # Not needed since we only enter the dataloader loop once
|
| 133 |
-
)
|
| 134 |
-
|
| 135 |
-
if config_dm.num_val_samples > 0:
|
| 136 |
-
print("----- Saving val samples -----")
|
| 137 |
-
|
| 138 |
-
val_output_dir = f"{config_dm.sample_output_dir}/val"
|
| 139 |
-
|
| 140 |
-
# Make directory for val samples
|
| 141 |
-
os.mkdir(val_output_dir)
|
| 142 |
-
|
| 143 |
-
# Get the dataset
|
| 144 |
-
val_dataset = PVNetUKConcurrentDataset(
|
| 145 |
-
config_dm.configuration,
|
| 146 |
-
start_time=config_dm.val_period[0],
|
| 147 |
-
end_time=config_dm.val_period[1],
|
| 148 |
-
)
|
| 149 |
-
|
| 150 |
-
# Save samples
|
| 151 |
-
save_samples_with_dataloader(
|
| 152 |
-
dataset=val_dataset,
|
| 153 |
-
save_dir=val_output_dir,
|
| 154 |
-
num_samples=config_dm.num_val_samples,
|
| 155 |
-
dataloader_kwargs=dataloader_kwargs,
|
| 156 |
-
)
|
| 157 |
-
|
| 158 |
-
del val_dataset
|
| 159 |
-
|
| 160 |
-
if config_dm.num_train_samples > 0:
|
| 161 |
-
print("----- Saving train samples -----")
|
| 162 |
-
|
| 163 |
-
train_output_dir = f"{config_dm.sample_output_dir}/train"
|
| 164 |
-
|
| 165 |
-
# Make directory for train samples
|
| 166 |
-
os.mkdir(train_output_dir)
|
| 167 |
-
|
| 168 |
-
# Get the dataset
|
| 169 |
-
train_dataset = PVNetUKConcurrentDataset(
|
| 170 |
-
config_dm.configuration,
|
| 171 |
-
start_time=config_dm.train_period[0],
|
| 172 |
-
end_time=config_dm.train_period[1],
|
| 173 |
-
)
|
| 174 |
-
|
| 175 |
-
# Save samples
|
| 176 |
-
save_samples_with_dataloader(
|
| 177 |
-
dataset=train_dataset,
|
| 178 |
-
save_dir=train_output_dir,
|
| 179 |
-
num_samples=config_dm.num_train_samples,
|
| 180 |
-
dataloader_kwargs=dataloader_kwargs,
|
| 181 |
-
)
|
| 182 |
-
|
| 183 |
-
del train_dataset
|
| 184 |
-
|
| 185 |
-
print("----- Saving complete -----")
|
| 186 |
-
|
| 187 |
-
|
| 188 |
-
if __name__ == "__main__":
|
| 189 |
-
main()
|
|
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|
|
scripts/save_samples.py
DELETED
|
@@ -1,218 +0,0 @@
|
|
| 1 |
-
"""
|
| 2 |
-
Constructs samples and saves them to disk.
|
| 3 |
-
|
| 4 |
-
Currently a slightly hacky implementation due to the way the configs are done. This script will use
|
| 5 |
-
the same config file currently set to train the model.
|
| 6 |
-
|
| 7 |
-
use:
|
| 8 |
-
```
|
| 9 |
-
python save_samples.py
|
| 10 |
-
```
|
| 11 |
-
if setting all values in the datamodule config file, or
|
| 12 |
-
|
| 13 |
-
```
|
| 14 |
-
python save_samples.py \
|
| 15 |
-
+datamodule.sample_output_dir="/mnt/disks/bigbatches/samples_v0" \
|
| 16 |
-
+datamodule.num_train_samples=0 \
|
| 17 |
-
+datamodule.num_val_samples=2 \
|
| 18 |
-
datamodule.num_workers=2 \
|
| 19 |
-
datamodule.prefetch_factor=2
|
| 20 |
-
```
|
| 21 |
-
if wanting to override these values for example
|
| 22 |
-
"""
|
| 23 |
-
|
| 24 |
-
# Ensure this block of code runs only in the main process to avoid issues with worker processes.
|
| 25 |
-
if __name__ == "__main__":
|
| 26 |
-
import torch.multiprocessing as mp
|
| 27 |
-
|
| 28 |
-
# Set the start method for torch multiprocessing. Choose either "forkserver" or "spawn" to be
|
| 29 |
-
# compatible with dask's multiprocessing.
|
| 30 |
-
mp.set_start_method("forkserver")
|
| 31 |
-
|
| 32 |
-
# Set the sharing strategy to 'file_system' to handle file descriptor limitations. This is
|
| 33 |
-
# important because libraries like Zarr may open many files, which can exhaust the file
|
| 34 |
-
# descriptor limit if too many workers are used.
|
| 35 |
-
mp.set_sharing_strategy("file_system")
|
| 36 |
-
|
| 37 |
-
|
| 38 |
-
import logging
|
| 39 |
-
import os
|
| 40 |
-
import shutil
|
| 41 |
-
import sys
|
| 42 |
-
import warnings
|
| 43 |
-
|
| 44 |
-
import dask
|
| 45 |
-
import hydra
|
| 46 |
-
from ocf_data_sampler.torch_datasets.datasets import PVNetUKRegionalDataset, SitesDataset
|
| 47 |
-
from ocf_data_sampler.torch_datasets.sample.site import SiteSample
|
| 48 |
-
from ocf_data_sampler.torch_datasets.sample.uk_regional import UKRegionalSample
|
| 49 |
-
from omegaconf import DictConfig, OmegaConf
|
| 50 |
-
from sqlalchemy import exc as sa_exc
|
| 51 |
-
from torch.utils.data import DataLoader, Dataset
|
| 52 |
-
from tqdm import tqdm
|
| 53 |
-
|
| 54 |
-
from pvnet.utils import print_config
|
| 55 |
-
|
| 56 |
-
dask.config.set(scheduler="threads", num_workers=4)
|
| 57 |
-
|
| 58 |
-
|
| 59 |
-
# ------- filter warning and set up config -------
|
| 60 |
-
|
| 61 |
-
warnings.filterwarnings("ignore", category=sa_exc.SAWarning)
|
| 62 |
-
|
| 63 |
-
logger = logging.getLogger(__name__)
|
| 64 |
-
|
| 65 |
-
logging.basicConfig(stream=sys.stdout, level=logging.ERROR)
|
| 66 |
-
|
| 67 |
-
# -------------------------------------------------
|
| 68 |
-
|
| 69 |
-
|
| 70 |
-
class SaveFuncFactory:
|
| 71 |
-
"""Factory for creating a function to save a sample to disk."""
|
| 72 |
-
|
| 73 |
-
def __init__(self, save_dir: str, renewable: str = "pv_uk"):
|
| 74 |
-
"""Factory for creating a function to save a sample to disk."""
|
| 75 |
-
self.save_dir = save_dir
|
| 76 |
-
self.renewable = renewable
|
| 77 |
-
|
| 78 |
-
def __call__(self, sample, sample_num: int):
|
| 79 |
-
"""Save a sample to disk"""
|
| 80 |
-
save_path = f"{self.save_dir}/{sample_num:08}"
|
| 81 |
-
|
| 82 |
-
if self.renewable == "pv_uk":
|
| 83 |
-
sample_class = UKRegionalSample(sample)
|
| 84 |
-
filename = f"{save_path}.pt"
|
| 85 |
-
elif self.renewable == "site":
|
| 86 |
-
sample_class = SiteSample(sample)
|
| 87 |
-
filename = f"{save_path}.nc"
|
| 88 |
-
else:
|
| 89 |
-
raise ValueError(f"Unknown renewable: {self.renewable}")
|
| 90 |
-
# Assign data and save
|
| 91 |
-
sample_class._data = sample
|
| 92 |
-
sample_class.save(filename)
|
| 93 |
-
|
| 94 |
-
|
| 95 |
-
def get_dataset(
|
| 96 |
-
config_path: str, start_time: str, end_time: str, renewable: str = "pv_uk"
|
| 97 |
-
) -> Dataset:
|
| 98 |
-
"""Get the dataset for the given renewable type."""
|
| 99 |
-
if renewable == "pv_uk":
|
| 100 |
-
dataset_cls = PVNetUKRegionalDataset
|
| 101 |
-
elif renewable == "site":
|
| 102 |
-
dataset_cls = SitesDataset
|
| 103 |
-
else:
|
| 104 |
-
raise ValueError(f"Unknown renewable: {renewable}")
|
| 105 |
-
|
| 106 |
-
return dataset_cls(config_path, start_time=start_time, end_time=end_time)
|
| 107 |
-
|
| 108 |
-
|
| 109 |
-
def save_samples_with_dataloader(
|
| 110 |
-
dataset: Dataset,
|
| 111 |
-
save_dir: str,
|
| 112 |
-
num_samples: int,
|
| 113 |
-
dataloader_kwargs: dict,
|
| 114 |
-
renewable: str = "pv_uk",
|
| 115 |
-
) -> None:
|
| 116 |
-
"""Save samples from a dataset using a dataloader."""
|
| 117 |
-
save_func = SaveFuncFactory(save_dir, renewable=renewable)
|
| 118 |
-
|
| 119 |
-
dataloader = DataLoader(dataset, **dataloader_kwargs)
|
| 120 |
-
|
| 121 |
-
pbar = tqdm(total=num_samples)
|
| 122 |
-
for i, sample in zip(range(num_samples), dataloader):
|
| 123 |
-
save_func(sample, i)
|
| 124 |
-
pbar.update()
|
| 125 |
-
pbar.close()
|
| 126 |
-
|
| 127 |
-
|
| 128 |
-
@hydra.main(config_path="../configs/", config_name="config.yaml", version_base="1.2")
|
| 129 |
-
def main(config: DictConfig) -> None:
|
| 130 |
-
"""Constructs and saves validation and training samples."""
|
| 131 |
-
config_dm = config.datamodule
|
| 132 |
-
|
| 133 |
-
print_config(config, resolve=False)
|
| 134 |
-
|
| 135 |
-
# Set up directory
|
| 136 |
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os.makedirs(config_dm.sample_output_dir, exist_ok=False)
|
| 137 |
-
|
| 138 |
-
# Copy across configs which define the samples into the new sample directory
|
| 139 |
-
with open(f"{config_dm.sample_output_dir}/datamodule.yaml", "w") as f:
|
| 140 |
-
f.write(OmegaConf.to_yaml(config_dm))
|
| 141 |
-
|
| 142 |
-
shutil.copyfile(
|
| 143 |
-
config_dm.configuration, f"{config_dm.sample_output_dir}/data_configuration.yaml"
|
| 144 |
-
)
|
| 145 |
-
|
| 146 |
-
# Define the keywargs going into the train and val dataloaders
|
| 147 |
-
dataloader_kwargs = dict(
|
| 148 |
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shuffle=True,
|
| 149 |
-
batch_size=None,
|
| 150 |
-
sampler=None,
|
| 151 |
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batch_sampler=None,
|
| 152 |
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num_workers=config_dm.num_workers,
|
| 153 |
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collate_fn=None,
|
| 154 |
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pin_memory=False, # Only using CPU to prepare samples so pinning is not beneficial
|
| 155 |
-
drop_last=False,
|
| 156 |
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timeout=0,
|
| 157 |
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worker_init_fn=None,
|
| 158 |
-
prefetch_factor=config_dm.prefetch_factor,
|
| 159 |
-
persistent_workers=False, # Not needed since we only enter the dataloader loop once
|
| 160 |
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)
|
| 161 |
-
|
| 162 |
-
if config_dm.num_val_samples > 0:
|
| 163 |
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print("----- Saving val samples -----")
|
| 164 |
-
|
| 165 |
-
val_output_dir = f"{config_dm.sample_output_dir}/val"
|
| 166 |
-
|
| 167 |
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# Make directory for val samples
|
| 168 |
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os.mkdir(val_output_dir)
|
| 169 |
-
|
| 170 |
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# Get the dataset
|
| 171 |
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val_dataset = get_dataset(
|
| 172 |
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config_dm.configuration,
|
| 173 |
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*config_dm.val_period,
|
| 174 |
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renewable=config.renewable,
|
| 175 |
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)
|
| 176 |
-
|
| 177 |
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# Save samples
|
| 178 |
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save_samples_with_dataloader(
|
| 179 |
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dataset=val_dataset,
|
| 180 |
-
save_dir=val_output_dir,
|
| 181 |
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num_samples=config_dm.num_val_samples,
|
| 182 |
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dataloader_kwargs=dataloader_kwargs,
|
| 183 |
-
renewable=config.renewable,
|
| 184 |
-
)
|
| 185 |
-
|
| 186 |
-
del val_dataset
|
| 187 |
-
|
| 188 |
-
if config_dm.num_train_samples > 0:
|
| 189 |
-
print("----- Saving train samples -----")
|
| 190 |
-
|
| 191 |
-
train_output_dir = f"{config_dm.sample_output_dir}/train"
|
| 192 |
-
|
| 193 |
-
# Make directory for train samples
|
| 194 |
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os.mkdir(train_output_dir)
|
| 195 |
-
|
| 196 |
-
# Get the dataset
|
| 197 |
-
train_dataset = get_dataset(
|
| 198 |
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config_dm.configuration,
|
| 199 |
-
*config_dm.train_period,
|
| 200 |
-
renewable=config.renewable,
|
| 201 |
-
)
|
| 202 |
-
|
| 203 |
-
# Save samples
|
| 204 |
-
save_samples_with_dataloader(
|
| 205 |
-
dataset=train_dataset,
|
| 206 |
-
save_dir=train_output_dir,
|
| 207 |
-
num_samples=config_dm.num_train_samples,
|
| 208 |
-
dataloader_kwargs=dataloader_kwargs,
|
| 209 |
-
renewable=config.renewable,
|
| 210 |
-
)
|
| 211 |
-
|
| 212 |
-
del train_dataset
|
| 213 |
-
|
| 214 |
-
print("----- Saving complete -----")
|
| 215 |
-
|
| 216 |
-
|
| 217 |
-
if __name__ == "__main__":
|
| 218 |
-
main()
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