Upload openbci_impedance.py
Browse files- openbci_impedance.py +694 -0
openbci_impedance.py
ADDED
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@@ -0,0 +1,694 @@
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| 1 |
+
#!/usr/bin/env python3
|
| 2 |
+
"""
|
| 3 |
+
OpenBCI Cyton + Daisy β Moniteur d'impedance live des electrodes
|
| 4 |
+
================================================================
|
| 5 |
+
Connexion via dongle USB, protocole serie officiel OpenBCI.
|
| 6 |
+
|
| 7 |
+
Dependances :
|
| 8 |
+
pip install pyserial scipy matplotlib numpy
|
| 9 |
+
|
| 10 |
+
Usage :
|
| 11 |
+
python openbci_impedance.py # auto-detection du port
|
| 12 |
+
python openbci_impedance.py --port COM3
|
| 13 |
+
python openbci_impedance.py --list-ports
|
| 14 |
+
|
| 15 |
+
Sources protocole :
|
| 16 |
+
https://docs.openbci.com/Cyton/CytonSDK/
|
| 17 |
+
https://docs.openbci.com/Cyton/CytonDataFormat/
|
| 18 |
+
https://openbci.com/forum/index.php?p=/discussion/2436/
|
| 19 |
+
"""
|
| 20 |
+
|
| 21 |
+
import sys
|
| 22 |
+
import time
|
| 23 |
+
import threading
|
| 24 |
+
import argparse
|
| 25 |
+
from collections import deque
|
| 26 |
+
|
| 27 |
+
import numpy as np
|
| 28 |
+
import serial
|
| 29 |
+
import serial.tools.list_ports
|
| 30 |
+
from scipy.signal import butter, sosfiltfilt, iirnotch
|
| 31 |
+
|
| 32 |
+
import matplotlib
|
| 33 |
+
matplotlib.use("TkAgg")
|
| 34 |
+
import matplotlib.pyplot as plt
|
| 35 |
+
import matplotlib.patches as mpatches
|
| 36 |
+
from matplotlib.patches import Circle, Arc
|
| 37 |
+
from matplotlib.animation import FuncAnimation
|
| 38 |
+
|
| 39 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 40 |
+
# β CONSTANTES OFFICIELLES β
|
| 41 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 42 |
+
|
| 43 |
+
BAUD_RATE = 115200
|
| 44 |
+
PACKET_SIZE = 33
|
| 45 |
+
START_BYTE = 0xA0
|
| 46 |
+
|
| 47 |
+
ADS1299_VREF = 4.5
|
| 48 |
+
ADS1299_GAIN = 24.0
|
| 49 |
+
SCALE_UV = (ADS1299_VREF / ADS1299_GAIN) / (2**23 - 1) * 1_000_000
|
| 50 |
+
|
| 51 |
+
# Pleine echelle ADS1299 en Β΅V (seuil railing)
|
| 52 |
+
ADC_MAX_UV = (2**23 - 1) * SCALE_UV # β 187 500 Β΅V
|
| 53 |
+
|
| 54 |
+
LEAD_OFF_FREQ = 31.5 # Hz
|
| 55 |
+
LEAD_OFF_AMPS = 6e-9 # A
|
| 56 |
+
SERIES_RESISTOR = 2200 # Ξ©
|
| 57 |
+
|
| 58 |
+
N_CHANNELS = 16
|
| 59 |
+
SAMPLE_RATE = 125 # Hz effectif par canal (pairing Cyton+Daisy)
|
| 60 |
+
DAISY_CHARS = ['Q','W','E','R','T','Y','U','I']
|
| 61 |
+
|
| 62 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 63 |
+
# β MAPPING ELECTRODES β
|
| 64 |
+
# β CORRECTION : Y positif = POSTERIOR (arriere) β
|
| 65 |
+
# β On inverse Y a l'affichage pour placer les β
|
| 66 |
+
# β electrodes dans la region posterieure du crane. β
|
| 67 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 68 |
+
# Coordonnees brutes fournies (X, Y)
|
| 69 |
+
ELECTRODE_POSITIONS_RAW = [
|
| 70 |
+
( 0.15, 0.35), # CH1
|
| 71 |
+
(-0.15, 0.35), # CH2
|
| 72 |
+
( 0.25, 0.38), # CH3
|
| 73 |
+
(-0.25, 0.38), # CH4
|
| 74 |
+
(-0.35, 0.40), # CH5
|
| 75 |
+
( 0.35, 0.40), # CH6
|
| 76 |
+
( 0.15, 0.45), # CH7
|
| 77 |
+
( 0.00, 0.48), # CH8
|
| 78 |
+
(-0.20, 0.25), # CH9
|
| 79 |
+
(-0.10, 0.25), # CH10
|
| 80 |
+
( 0.00, 0.25), # CH11
|
| 81 |
+
( 0.10, 0.25), # CH12
|
| 82 |
+
( 0.20, 0.25), # CH13
|
| 83 |
+
( 0.00, 0.35), # CH14
|
| 84 |
+
( 0.00, 0.00), # CH15 (inactive)
|
| 85 |
+
( 0.00, 0.00), # CH16 (inactive)
|
| 86 |
+
]
|
| 87 |
+
|
| 88 |
+
HEAD_CENTER_Y = 0.12 # centre geometrique de la tete dans l'axe plot
|
| 89 |
+
|
| 90 |
+
def _posterior_y(y_raw):
|
| 91 |
+
"""
|
| 92 |
+
Reflechit Y autour du centre de la tete pour placer les electrodes
|
| 93 |
+
dans la region posterieure (bas du head plot = arriere du crane).
|
| 94 |
+
y_raw > 0 β affiche sous l'equateur.
|
| 95 |
+
"""
|
| 96 |
+
return 2.0 * HEAD_CENTER_Y - y_raw # = 0.24 - y_raw
|
| 97 |
+
|
| 98 |
+
# Positions d'affichage finales
|
| 99 |
+
ELECTRODE_POSITIONS = [
|
| 100 |
+
(x, _posterior_y(y)) if not (x == 0.0 and y == 0.0) else (0.0, 0.0)
|
| 101 |
+
for x, y in ELECTRODE_POSITIONS_RAW
|
| 102 |
+
]
|
| 103 |
+
|
| 104 |
+
# Seuils d'impedance et couleurs
|
| 105 |
+
IMP_THRESHOLDS = [5_000, 10_000, 25_000]
|
| 106 |
+
IMP_COLORS = ['#00CC44', '#CCCC00', '#FF8800', '#CC2222']
|
| 107 |
+
IMP_LABELS_LEG = ['<5 kΞ© Good', '5-10 kΞ© OK', '10-25 kΞ© Fair', '>25 kΞ© Poor']
|
| 108 |
+
IMP_NO_DATA = '#555577'
|
| 109 |
+
IMP_RAILED = '#220033' # violet fonce = saturation / circuit ouvert
|
| 110 |
+
|
| 111 |
+
|
| 112 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 113 |
+
# β DETECTION DU PORT SERIE β
|
| 114 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 115 |
+
|
| 116 |
+
def find_openbci_port():
|
| 117 |
+
keywords = ['openbci', 'ftdi', 'usbserial', 'ttyusb', 'ft231', 'ft232']
|
| 118 |
+
ports = serial.tools.list_ports.comports()
|
| 119 |
+
for p in ports:
|
| 120 |
+
combined = ((p.description or '') + (p.hwid or '')).lower()
|
| 121 |
+
if any(k in combined for k in keywords):
|
| 122 |
+
return p.device
|
| 123 |
+
for p in ports:
|
| 124 |
+
if 'usb' in (p.hwid or '').lower():
|
| 125 |
+
return p.device
|
| 126 |
+
return None
|
| 127 |
+
|
| 128 |
+
|
| 129 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββοΏ½οΏ½βββ
|
| 130 |
+
# β PARSING DES PAQUETS OPENBCI β
|
| 131 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 132 |
+
|
| 133 |
+
def parse_24bit_signed(b0, b1, b2):
|
| 134 |
+
val = (b0 << 16) | (b1 << 8) | b2
|
| 135 |
+
if val & 0x800000:
|
| 136 |
+
val -= 0x1000000
|
| 137 |
+
return val
|
| 138 |
+
|
| 139 |
+
|
| 140 |
+
def parse_packet(data: bytes):
|
| 141 |
+
if len(data) < PACKET_SIZE:
|
| 142 |
+
return None
|
| 143 |
+
if data[0] != START_BYTE:
|
| 144 |
+
return None
|
| 145 |
+
if (data[32] & 0xF0) != 0xC0:
|
| 146 |
+
return None
|
| 147 |
+
sample_num = data[1]
|
| 148 |
+
channels_uv = []
|
| 149 |
+
for ch in range(8):
|
| 150 |
+
offset = 2 + ch * 3
|
| 151 |
+
raw = parse_24bit_signed(data[offset], data[offset+1], data[offset+2])
|
| 152 |
+
channels_uv.append(raw * SCALE_UV)
|
| 153 |
+
return sample_num, channels_uv
|
| 154 |
+
|
| 155 |
+
|
| 156 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 157 |
+
# β FILTRES NUMERIQUES β
|
| 158 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 159 |
+
|
| 160 |
+
def _make_notch_sos(freq_hz: float, q: float = 30.0, fs: float = SAMPLE_RATE):
|
| 161 |
+
"""Filtre notch IIR (bande rejetee autour de freq_hz)."""
|
| 162 |
+
w0 = freq_hz / (fs / 2.0)
|
| 163 |
+
if w0 <= 0 or w0 >= 1.0:
|
| 164 |
+
return None
|
| 165 |
+
b, a = iirnotch(w0, q)
|
| 166 |
+
# Convertir en SOS pour stabilite numerique
|
| 167 |
+
from scipy.signal import tf2sos
|
| 168 |
+
return tf2sos(b, a)
|
| 169 |
+
|
| 170 |
+
|
| 171 |
+
def _make_bandpass_sos(low_hz: float, high_hz: float, order: int = 4,
|
| 172 |
+
fs: float = SAMPLE_RATE):
|
| 173 |
+
"""Filtre passe-bande Butterworth en SOS."""
|
| 174 |
+
nyq = fs / 2.0
|
| 175 |
+
low = low_hz / nyq
|
| 176 |
+
high = high_hz / nyq
|
| 177 |
+
if low <= 0 or high >= 1.0:
|
| 178 |
+
return None
|
| 179 |
+
return butter(order, [low, high], btype='band', output='sos')
|
| 180 |
+
|
| 181 |
+
|
| 182 |
+
# Pre-calculer les filtres une seule fois
|
| 183 |
+
# Californie = reseau 60 Hz uniquement (pas de 50 Hz)
|
| 184 |
+
_NOTCH_60_SOS = _make_notch_sos(60.0)
|
| 185 |
+
_BANDPASS_SOS = _make_bandpass_sos(28.0, 35.0)
|
| 186 |
+
|
| 187 |
+
|
| 188 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 189 |
+
# β CALCUL D'IMPEDANCE (methode GUI) β
|
| 190 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 191 |
+
|
| 192 |
+
# Seuil de railing : si >RAIL_FRAC des echantillons depasse RAIL_THRESH_UV
|
| 193 |
+
# on considere le canal sature (circuit ouvert)
|
| 194 |
+
RAIL_THRESH_UV = 0.90 * ADC_MAX_UV # 90 % de la pleine echelle
|
| 195 |
+
RAIL_FRAC = 0.05 # 5 % d'echantillons suffit
|
| 196 |
+
|
| 197 |
+
def compute_impedance(buffer_uv: list):
|
| 198 |
+
"""
|
| 199 |
+
Calcule l'impedance en Ohms depuis un buffer de donnees Β΅V.
|
| 200 |
+
|
| 201 |
+
Retourne :
|
| 202 |
+
float β impedance en Ξ©
|
| 203 |
+
'open' β canal sature (railing) = electrode non connectee
|
| 204 |
+
None β pas assez de donnees
|
| 205 |
+
|
| 206 |
+
Formule GUI OpenBCI :
|
| 207 |
+
impedance = (sqrt(2) * std_uV * 1e-6) / LEAD_OFF_AMPS - SERIES_RESISTOR
|
| 208 |
+
|
| 209 |
+
Pipeline de filtrage :
|
| 210 |
+
1. Notch 50 Hz (secteur europeen)
|
| 211 |
+
2. Notch 60 Hz (securite)
|
| 212 |
+
3. Passe-bande 28-35 Hz (isole le signal lead-off a 31.5 Hz)
|
| 213 |
+
"""
|
| 214 |
+
if len(buffer_uv) < SAMPLE_RATE:
|
| 215 |
+
return None
|
| 216 |
+
|
| 217 |
+
arr = np.array(buffer_uv[-SAMPLE_RATE * 2:], dtype=float)
|
| 218 |
+
|
| 219 |
+
# ββ Detection du railing ββββββββββββββββββββββββββββββββββββββββββββ
|
| 220 |
+
# Un canal sature (entree flottante clippee) presente des echantillons
|
| 221 |
+
# proches de la pleine echelle +/- ADC. Dans ce cas l'impedance calculee
|
| 222 |
+
# serait faussement basse (std β 0 apres saturation DC).
|
| 223 |
+
railed_frac = np.mean(np.abs(arr) > RAIL_THRESH_UV)
|
| 224 |
+
if railed_frac >= RAIL_FRAC:
|
| 225 |
+
return 'open'
|
| 226 |
+
|
| 227 |
+
# ββ Filtrage ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 228 |
+
sig = arr.copy()
|
| 229 |
+
if _NOTCH_60_SOS is not None:
|
| 230 |
+
sig = sosfiltfilt(_NOTCH_60_SOS, sig)
|
| 231 |
+
if _BANDPASS_SOS is None:
|
| 232 |
+
return None
|
| 233 |
+
filtered = sosfiltfilt(_BANDPASS_SOS, sig)
|
| 234 |
+
|
| 235 |
+
std_uv = np.std(filtered)
|
| 236 |
+
impedance = (np.sqrt(2.0) * std_uv * 1e-6) / LEAD_OFF_AMPS - SERIES_RESISTOR
|
| 237 |
+
return max(0.0, impedance)
|
| 238 |
+
|
| 239 |
+
|
| 240 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 241 |
+
# β CONTROLEUR DU BOARD CYTON+DAISY β
|
| 242 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 243 |
+
|
| 244 |
+
class CytonDaisyBoard:
|
| 245 |
+
INIT_TIMEOUT = 15.0
|
| 246 |
+
CMD_DELAY = 0.05
|
| 247 |
+
|
| 248 |
+
def __init__(self, port: str):
|
| 249 |
+
self.port = port
|
| 250 |
+
self.ser = None
|
| 251 |
+
self.running = False
|
| 252 |
+
self._lock = threading.Lock()
|
| 253 |
+
|
| 254 |
+
self._buf_size = SAMPLE_RATE * 4
|
| 255 |
+
self._buffers = [deque(maxlen=self._buf_size) for _ in range(N_CHANNELS)]
|
| 256 |
+
self._last_cyton_data = None
|
| 257 |
+
self._rx_thread = None
|
| 258 |
+
|
| 259 |
+
def connect(self):
|
| 260 |
+
print(f"[Board] Ouverture port {self.port} @ {BAUD_RATE} baudβ¦")
|
| 261 |
+
self.ser = serial.Serial(
|
| 262 |
+
self.port, BAUD_RATE,
|
| 263 |
+
timeout=5,
|
| 264 |
+
rtscts=False,
|
| 265 |
+
dsrdtr=False,
|
| 266 |
+
)
|
| 267 |
+
self.ser.reset_input_buffer()
|
| 268 |
+
self.ser.reset_output_buffer()
|
| 269 |
+
time.sleep(0.5)
|
| 270 |
+
|
| 271 |
+
print("[Board] Envoi 's' pour stopper un stream residuelβ¦")
|
| 272 |
+
self._send(b's')
|
| 273 |
+
time.sleep(1.2)
|
| 274 |
+
self.ser.reset_input_buffer()
|
| 275 |
+
|
| 276 |
+
print("[Board] Envoi 'v' (soft reset)β¦")
|
| 277 |
+
self._send(b'v')
|
| 278 |
+
time.sleep(0.5)
|
| 279 |
+
|
| 280 |
+
print("[Board] Attente '$$$'β¦")
|
| 281 |
+
self._wait_for_dollar_signs()
|
| 282 |
+
print("[Board] Board pret.")
|
| 283 |
+
|
| 284 |
+
self._send(b'C') # mode 16 canaux
|
| 285 |
+
time.sleep(0.5)
|
| 286 |
+
self._flush_rx()
|
| 287 |
+
|
| 288 |
+
print("[Board] Activation impedance 16 canauxβ¦")
|
| 289 |
+
self._enable_all_impedances()
|
| 290 |
+
time.sleep(1.0)
|
| 291 |
+
|
| 292 |
+
self._send(b'b') # start stream
|
| 293 |
+
print("[Board] Stream demarre.")
|
| 294 |
+
|
| 295 |
+
self.running = True
|
| 296 |
+
self._rx_thread = threading.Thread(
|
| 297 |
+
target=self._read_loop, name="rx_thread", daemon=True
|
| 298 |
+
)
|
| 299 |
+
self._rx_thread.start()
|
| 300 |
+
|
| 301 |
+
def disconnect(self):
|
| 302 |
+
print("[Board] Deconnexionβ¦")
|
| 303 |
+
self.running = False
|
| 304 |
+
if self.ser and self.ser.is_open:
|
| 305 |
+
try:
|
| 306 |
+
self._send(b's')
|
| 307 |
+
time.sleep(0.3)
|
| 308 |
+
self._disable_all_impedances()
|
| 309 |
+
time.sleep(0.3)
|
| 310 |
+
finally:
|
| 311 |
+
self.ser.close()
|
| 312 |
+
print("[Board] Port ferme.")
|
| 313 |
+
|
| 314 |
+
def _send(self, cmd: bytes):
|
| 315 |
+
if self.ser and self.ser.is_open:
|
| 316 |
+
self.ser.write(cmd)
|
| 317 |
+
self.ser.flush()
|
| 318 |
+
|
| 319 |
+
def _wait_for_dollar_signs(self):
|
| 320 |
+
buf = b''
|
| 321 |
+
start = time.time()
|
| 322 |
+
retry_sent = False
|
| 323 |
+
while time.time() - start < self.INIT_TIMEOUT:
|
| 324 |
+
if self.ser.in_waiting:
|
| 325 |
+
chunk = self.ser.read(self.ser.in_waiting)
|
| 326 |
+
buf += chunk
|
| 327 |
+
try:
|
| 328 |
+
readable = chunk.decode('utf-8', errors='replace')
|
| 329 |
+
if readable.strip():
|
| 330 |
+
print(f"[Board] Recu : {readable.strip()!r}")
|
| 331 |
+
except Exception:
|
| 332 |
+
pass
|
| 333 |
+
if b'$$$' in buf:
|
| 334 |
+
decoded = buf.decode('utf-8', errors='replace').strip()
|
| 335 |
+
print(f"[Board] Message init :\n{decoded}")
|
| 336 |
+
return
|
| 337 |
+
elapsed = time.time() - start
|
| 338 |
+
if elapsed > 4.0 and not retry_sent:
|
| 339 |
+
print("[Board] Pas de reponse apres 4s, re-envoi 'v'β¦")
|
| 340 |
+
self.ser.reset_input_buffer()
|
| 341 |
+
self._send(b'v')
|
| 342 |
+
retry_sent = True
|
| 343 |
+
time.sleep(0.05)
|
| 344 |
+
raise TimeoutError(
|
| 345 |
+
"Le board n'a pas envoye '$$$'.\n"
|
| 346 |
+
" 1. Board sous tension (LED bleue allumee)\n"
|
| 347 |
+
" 2. Dongle USB branche AVANT le board\n"
|
| 348 |
+
" 3. Interrupteur dongle sur GPIO6 (pas RESET)\n"
|
| 349 |
+
" 4. Aucune autre application sur ce port"
|
| 350 |
+
)
|
| 351 |
+
|
| 352 |
+
def _flush_rx(self, duration=0.5):
|
| 353 |
+
deadline = time.time() + duration
|
| 354 |
+
while time.time() < deadline:
|
| 355 |
+
if self.ser.in_waiting:
|
| 356 |
+
data = self.ser.read(self.ser.in_waiting)
|
| 357 |
+
try:
|
| 358 |
+
d = data.decode('utf-8', errors='replace')
|
| 359 |
+
if d.strip():
|
| 360 |
+
print(f"[Board] Reponse : {d.strip()!r}")
|
| 361 |
+
except Exception:
|
| 362 |
+
pass
|
| 363 |
+
time.sleep(0.05)
|
| 364 |
+
|
| 365 |
+
def _impedance_cmd(self, ch_char: str, pchan: int, nchan: int):
|
| 366 |
+
cmd = f'z{ch_char}{pchan}{nchan}Z'.encode('ascii')
|
| 367 |
+
self._send(cmd)
|
| 368 |
+
time.sleep(self.CMD_DELAY)
|
| 369 |
+
|
| 370 |
+
def _enable_all_impedances(self):
|
| 371 |
+
for ch in range(1, 9):
|
| 372 |
+
self._impedance_cmd(str(ch), pchan=1, nchan=0)
|
| 373 |
+
for char in DAISY_CHARS:
|
| 374 |
+
self._impedance_cmd(char, pchan=1, nchan=0)
|
| 375 |
+
print("[Board] Impedance activee sur 16 canaux.")
|
| 376 |
+
|
| 377 |
+
def _disable_all_impedances(self):
|
| 378 |
+
for ch in range(1, 9):
|
| 379 |
+
self._impedance_cmd(str(ch), pchan=0, nchan=0)
|
| 380 |
+
for char in DAISY_CHARS:
|
| 381 |
+
self._impedance_cmd(char, pchan=0, nchan=0)
|
| 382 |
+
|
| 383 |
+
def _read_loop(self):
|
| 384 |
+
sync_buf = bytearray()
|
| 385 |
+
while self.running:
|
| 386 |
+
try:
|
| 387 |
+
if not self.ser.is_open:
|
| 388 |
+
break
|
| 389 |
+
n = self.ser.in_waiting
|
| 390 |
+
if n == 0:
|
| 391 |
+
time.sleep(0.001)
|
| 392 |
+
continue
|
| 393 |
+
chunk = self.ser.read(n)
|
| 394 |
+
sync_buf.extend(chunk)
|
| 395 |
+
while len(sync_buf) >= PACKET_SIZE:
|
| 396 |
+
idx = -1
|
| 397 |
+
for i in range(len(sync_buf) - PACKET_SIZE + 1):
|
| 398 |
+
if (sync_buf[i] == START_BYTE and
|
| 399 |
+
(sync_buf[i + PACKET_SIZE - 1] & 0xF0) == 0xC0):
|
| 400 |
+
idx = i
|
| 401 |
+
break
|
| 402 |
+
if idx == -1:
|
| 403 |
+
del sync_buf[:max(0, len(sync_buf) - PACKET_SIZE + 1)]
|
| 404 |
+
break
|
| 405 |
+
if idx > 0:
|
| 406 |
+
del sync_buf[:idx]
|
| 407 |
+
continue
|
| 408 |
+
packet = bytes(sync_buf[:PACKET_SIZE])
|
| 409 |
+
del sync_buf[:PACKET_SIZE]
|
| 410 |
+
result = parse_packet(packet)
|
| 411 |
+
if result is not None:
|
| 412 |
+
self._handle_sample(*result)
|
| 413 |
+
except serial.SerialException as e:
|
| 414 |
+
print(f"[Board] Erreur serie : {e}")
|
| 415 |
+
self.running = False
|
| 416 |
+
break
|
| 417 |
+
except Exception as e:
|
| 418 |
+
print(f"[Board] Erreur lecture : {e}")
|
| 419 |
+
time.sleep(0.005)
|
| 420 |
+
|
| 421 |
+
def _handle_sample(self, sample_num: int, ch_data_uv: list):
|
| 422 |
+
is_cyton = (sample_num % 2) == 1
|
| 423 |
+
with self._lock:
|
| 424 |
+
if is_cyton:
|
| 425 |
+
self._last_cyton_data = ch_data_uv[:]
|
| 426 |
+
else:
|
| 427 |
+
if self._last_cyton_data is not None:
|
| 428 |
+
for i in range(8):
|
| 429 |
+
self._buffers[i].append(self._last_cyton_data[i])
|
| 430 |
+
for i in range(8):
|
| 431 |
+
self._buffers[8 + i].append(ch_data_uv[i])
|
| 432 |
+
self._last_cyton_data = None
|
| 433 |
+
|
| 434 |
+
def get_impedances(self) -> list:
|
| 435 |
+
with self._lock:
|
| 436 |
+
snapshot = [list(b) for b in self._buffers]
|
| 437 |
+
return [compute_impedance(buf) for buf in snapshot]
|
| 438 |
+
|
| 439 |
+
def n_samples_collected(self) -> int:
|
| 440 |
+
with self._lock:
|
| 441 |
+
return max((len(b) for b in self._buffers), default=0)
|
| 442 |
+
|
| 443 |
+
|
| 444 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 445 |
+
# β AFFICHAGE MATPLOTLIB (HEAD PLOT) β
|
| 446 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 447 |
+
|
| 448 |
+
def _impedance_color(val):
|
| 449 |
+
if val is None:
|
| 450 |
+
return IMP_NO_DATA
|
| 451 |
+
if val == 'open':
|
| 452 |
+
return IMP_RAILED
|
| 453 |
+
if val < IMP_THRESHOLDS[0]:
|
| 454 |
+
return IMP_COLORS[0]
|
| 455 |
+
elif val < IMP_THRESHOLDS[1]:
|
| 456 |
+
return IMP_COLORS[1]
|
| 457 |
+
elif val < IMP_THRESHOLDS[2]:
|
| 458 |
+
return IMP_COLORS[2]
|
| 459 |
+
else:
|
| 460 |
+
return IMP_COLORS[3]
|
| 461 |
+
|
| 462 |
+
|
| 463 |
+
def _impedance_text(val):
|
| 464 |
+
if val is None:
|
| 465 |
+
return '---'
|
| 466 |
+
if val == 'open':
|
| 467 |
+
return 'OPEN'
|
| 468 |
+
if val >= 1_000_000:
|
| 469 |
+
return f'{val/1_000_000:.1f} MΞ©'
|
| 470 |
+
elif val >= 1_000:
|
| 471 |
+
return f'{val/1_000:.1f} kΞ©'
|
| 472 |
+
else:
|
| 473 |
+
return f'{val:.0f} Ξ©'
|
| 474 |
+
|
| 475 |
+
|
| 476 |
+
class ImpedanceDisplay:
|
| 477 |
+
ELECTRODE_RADIUS = 0.042
|
| 478 |
+
HEAD_RADIUS = 0.50
|
| 479 |
+
UPDATE_MS = 500
|
| 480 |
+
|
| 481 |
+
def __init__(self, board: CytonDaisyBoard):
|
| 482 |
+
self.board = board
|
| 483 |
+
self._build_figure()
|
| 484 |
+
|
| 485 |
+
def _build_figure(self):
|
| 486 |
+
self.fig = plt.figure(figsize=(10, 10), facecolor='#12121f')
|
| 487 |
+
self.ax = self.fig.add_subplot(111)
|
| 488 |
+
self.ax.set_facecolor('#1a1a2e')
|
| 489 |
+
self.ax.set_xlim(-0.78, 0.78)
|
| 490 |
+
self.ax.set_ylim(-0.60, 0.82)
|
| 491 |
+
self.ax.set_aspect('equal')
|
| 492 |
+
self.ax.axis('off')
|
| 493 |
+
|
| 494 |
+
self.fig.suptitle(
|
| 495 |
+
'OpenBCI Cyton + Daisy β Electrode Impedance (live)',
|
| 496 |
+
color='white', fontsize=13, fontweight='bold', y=0.97
|
| 497 |
+
)
|
| 498 |
+
|
| 499 |
+
self._draw_head()
|
| 500 |
+
self._draw_legend()
|
| 501 |
+
self._create_electrode_artists()
|
| 502 |
+
|
| 503 |
+
self.status_lbl = self.ax.text(
|
| 504 |
+
0, -0.55,
|
| 505 |
+
'Collecting data... (minimum 1 s required per channel)',
|
| 506 |
+
ha='center', va='center', fontsize=8.5, color='#aaaacc'
|
| 507 |
+
)
|
| 508 |
+
|
| 509 |
+
self.anim = FuncAnimation(
|
| 510 |
+
self.fig, self._update_frame,
|
| 511 |
+
interval=self.UPDATE_MS, blit=False, cache_frame_data=False
|
| 512 |
+
)
|
| 513 |
+
|
| 514 |
+
def _draw_head(self):
|
| 515 |
+
"""
|
| 516 |
+
Tete avec nez vers le HAUT (anterieur) et region posterieure en bas.
|
| 517 |
+
Les electrodes vont apparaitre dans la moitie inferieure (posterieure).
|
| 518 |
+
"""
|
| 519 |
+
cx, cy = 0, HEAD_CENTER_Y
|
| 520 |
+
r = self.HEAD_RADIUS
|
| 521 |
+
|
| 522 |
+
head_circle = Circle(
|
| 523 |
+
(cx, cy), r, fill=False,
|
| 524 |
+
linewidth=2.5, edgecolor='#9999bb', zorder=1
|
| 525 |
+
)
|
| 526 |
+
self.ax.add_patch(head_circle)
|
| 527 |
+
|
| 528 |
+
# Nez (anterieur = haut)
|
| 529 |
+
nose_x = [-0.04, 0.0, 0.04]
|
| 530 |
+
nose_y = [cy + r - 0.01, cy + r + 0.06, cy + r - 0.01]
|
| 531 |
+
self.ax.plot(nose_x, nose_y, color='#9999bb', linewidth=2.5, zorder=1)
|
| 532 |
+
|
| 533 |
+
# Oreilles
|
| 534 |
+
ear_l = Arc((-r + cx, cy), 0.10, 0.22, angle=0,
|
| 535 |
+
theta1=90, theta2=270,
|
| 536 |
+
linewidth=2.5, edgecolor='#9999bb', zorder=1)
|
| 537 |
+
ear_r = Arc(( r + cx, cy), 0.10, 0.22, angle=0,
|
| 538 |
+
theta1=270, theta2=90,
|
| 539 |
+
linewidth=2.5, edgecolor='#9999bb', zorder=1)
|
| 540 |
+
self.ax.add_patch(ear_l)
|
| 541 |
+
self.ax.add_patch(ear_r)
|
| 542 |
+
|
| 543 |
+
# Lignes de reference (axe sagittal + coronal)
|
| 544 |
+
self.ax.plot([cx, cx], [cy - r, cy + r], '--',
|
| 545 |
+
color='#2a2a4a', linewidth=1.0, zorder=0)
|
| 546 |
+
self.ax.plot([cx - r, cx + r], [cy, cy], '--',
|
| 547 |
+
color='#2a2a4a', linewidth=1.0, zorder=0)
|
| 548 |
+
|
| 549 |
+
# Etiquettes orientation
|
| 550 |
+
self.ax.text(0, cy + r + 0.09, 'FRONT', ha='center', va='bottom',
|
| 551 |
+
fontsize=7, color='#6666aa')
|
| 552 |
+
self.ax.text(0, cy - r - 0.04, 'BACK', ha='center', va='top',
|
| 553 |
+
fontsize=7, color='#6666aa')
|
| 554 |
+
|
| 555 |
+
def _draw_legend(self):
|
| 556 |
+
legend_y = -0.53
|
| 557 |
+
items = (list(zip(IMP_LABELS_LEG, IMP_COLORS))
|
| 558 |
+
+ [('Open circuit / saturated', IMP_RAILED),
|
| 559 |
+
('No data', IMP_NO_DATA)])
|
| 560 |
+
x_start = -0.72
|
| 561 |
+
x_step = 0.248
|
| 562 |
+
for i, (label, color) in enumerate(items):
|
| 563 |
+
x = x_start + i * x_step
|
| 564 |
+
self.ax.add_patch(Circle((x, legend_y), 0.018, color=color, zorder=4))
|
| 565 |
+
self.ax.text(x + 0.025, legend_y, label,
|
| 566 |
+
va='center', ha='left', fontsize=6.5, color='white')
|
| 567 |
+
|
| 568 |
+
def _create_electrode_artists(self):
|
| 569 |
+
self.circles = []
|
| 570 |
+
self.imp_labels = []
|
| 571 |
+
self.ch_labels = []
|
| 572 |
+
|
| 573 |
+
for i, (x, y) in enumerate(ELECTRODE_POSITIONS):
|
| 574 |
+
ch_num = i + 1
|
| 575 |
+
inactive = (x == 0.0 and y == 0.0)
|
| 576 |
+
|
| 577 |
+
if inactive:
|
| 578 |
+
self.circles.append(None)
|
| 579 |
+
self.imp_labels.append(None)
|
| 580 |
+
self.ch_labels.append(None)
|
| 581 |
+
continue
|
| 582 |
+
|
| 583 |
+
circ = Circle(
|
| 584 |
+
(x, y), self.ELECTRODE_RADIUS,
|
| 585 |
+
facecolor=IMP_NO_DATA, edgecolor='white',
|
| 586 |
+
linewidth=1.2, zorder=3
|
| 587 |
+
)
|
| 588 |
+
self.ax.add_patch(circ)
|
| 589 |
+
self.circles.append(circ)
|
| 590 |
+
|
| 591 |
+
ch_lbl = self.ax.text(
|
| 592 |
+
x, y, f'CH{ch_num}',
|
| 593 |
+
ha='center', va='center',
|
| 594 |
+
fontsize=5.8, color='black', fontweight='bold', zorder=5
|
| 595 |
+
)
|
| 596 |
+
self.ch_labels.append(ch_lbl)
|
| 597 |
+
|
| 598 |
+
imp_lbl = self.ax.text(
|
| 599 |
+
x, y - self.ELECTRODE_RADIUS - 0.025,
|
| 600 |
+
'---',
|
| 601 |
+
ha='center', va='top',
|
| 602 |
+
fontsize=7.5, color='white', fontweight='bold', zorder=5
|
| 603 |
+
)
|
| 604 |
+
self.imp_labels.append(imp_lbl)
|
| 605 |
+
|
| 606 |
+
def _update_frame(self, _frame):
|
| 607 |
+
impedances = self.board.get_impedances()
|
| 608 |
+
n_samples = self.board.n_samples_collected()
|
| 609 |
+
n_active = sum(1 for v in impedances
|
| 610 |
+
if v is not None and v != 'open')
|
| 611 |
+
|
| 612 |
+
for i, imp in enumerate(impedances):
|
| 613 |
+
circ = self.circles[i]
|
| 614 |
+
imp_lbl = self.imp_labels[i]
|
| 615 |
+
if circ is None:
|
| 616 |
+
continue
|
| 617 |
+
circ.set_facecolor(_impedance_color(imp))
|
| 618 |
+
if imp_lbl is not None:
|
| 619 |
+
imp_lbl.set_text(_impedance_text(imp))
|
| 620 |
+
# Couleur du texte : blanc sauf sur OPEN (violet fonce β texte clair)
|
| 621 |
+
imp_lbl.set_color('#ddaaff' if imp == 'open' else 'white')
|
| 622 |
+
|
| 623 |
+
need = SAMPLE_RATE
|
| 624 |
+
pct = min(100, int(n_samples / need * 100))
|
| 625 |
+
n_open = sum(1 for v in impedances if v == 'open')
|
| 626 |
+
|
| 627 |
+
if n_samples < need:
|
| 628 |
+
self.status_lbl.set_text(
|
| 629 |
+
f'Collecting: {n_samples}/{need} samples ({pct}%)'
|
| 630 |
+
)
|
| 631 |
+
else:
|
| 632 |
+
self.status_lbl.set_text(
|
| 633 |
+
f'Live β {n_active}/14 channels measured | {n_open} open circuit(s)'
|
| 634 |
+
)
|
| 635 |
+
return []
|
| 636 |
+
|
| 637 |
+
def show(self):
|
| 638 |
+
plt.tight_layout(rect=[0, 0, 1, 0.96])
|
| 639 |
+
plt.show()
|
| 640 |
+
|
| 641 |
+
|
| 642 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 643 |
+
# β POINT D'ENTREE β
|
| 644 |
+
# ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 645 |
+
|
| 646 |
+
def main():
|
| 647 |
+
parser = argparse.ArgumentParser(
|
| 648 |
+
description="OpenBCI Cyton+Daisy β Moniteur d'impedance live"
|
| 649 |
+
)
|
| 650 |
+
parser.add_argument('--port', type=str, default=None,
|
| 651 |
+
help='Port serie (ex: COM3, /dev/ttyUSB0)')
|
| 652 |
+
parser.add_argument('--list-ports', action='store_true',
|
| 653 |
+
help='Lister les ports disponibles et quitter')
|
| 654 |
+
args = parser.parse_args()
|
| 655 |
+
|
| 656 |
+
if args.list_ports:
|
| 657 |
+
print("Ports serie disponibles :")
|
| 658 |
+
for p in serial.tools.list_ports.comports():
|
| 659 |
+
print(f" {p.device:20s} {p.description} [{p.hwid}]")
|
| 660 |
+
sys.exit(0)
|
| 661 |
+
|
| 662 |
+
port = args.port
|
| 663 |
+
if port is None:
|
| 664 |
+
port = find_openbci_port()
|
| 665 |
+
if port is None:
|
| 666 |
+
print("ERREUR : dongle introuvable. Utilisez --port.")
|
| 667 |
+
sys.exit(1)
|
| 668 |
+
print(f"Dongle detecte automatiquement : {port}")
|
| 669 |
+
else:
|
| 670 |
+
print(f"Port specifie : {port}")
|
| 671 |
+
|
| 672 |
+
board = CytonDaisyBoard(port)
|
| 673 |
+
try:
|
| 674 |
+
board.connect()
|
| 675 |
+
except TimeoutError as e:
|
| 676 |
+
print(f"\nERREUR de connexion : {e}")
|
| 677 |
+
sys.exit(1)
|
| 678 |
+
except serial.SerialException as e:
|
| 679 |
+
print(f"\nERREUR serie : {e}")
|
| 680 |
+
sys.exit(1)
|
| 681 |
+
|
| 682 |
+
display = ImpedanceDisplay(board)
|
| 683 |
+
print("\nFenetre ouverte. Fermez-la ou Ctrl+C pour quitter.")
|
| 684 |
+
try:
|
| 685 |
+
display.show()
|
| 686 |
+
except KeyboardInterrupt:
|
| 687 |
+
print("\nInterruption.")
|
| 688 |
+
finally:
|
| 689 |
+
board.disconnect()
|
| 690 |
+
print("Programme termine.")
|
| 691 |
+
|
| 692 |
+
|
| 693 |
+
if __name__ == '__main__':
|
| 694 |
+
main()
|