Download affinity/model.json from oteam/boltzgen: direct link, hf CLI and curl.
- Browser
- Download file 2.93 kB
-
https://huggingface.co/oteam/boltzgen/resolve/main/affinity/model.json
- Command line
-
hf download hf://oteam/boltzgen/affinity/model.json
-
curl -L -o model.json https://huggingface.co/oteam/boltzgen/resolve/main/affinity/model.json
2.93 kB
| { | |
| "affinity_heads": [ | |
| { | |
| "dropout": 0.25, | |
| "expansion": 2, | |
| "max_distance": 22.0, | |
| "num_conditioning_transitions": 2, | |
| "num_distogram_bins": 64, | |
| "num_pair_update_blocks": 8, | |
| "num_triangle_attention_heads": 4, | |
| "triangle_attention_head_size": 32 | |
| }, | |
| { | |
| "dropout": 0.25, | |
| "expansion": 2, | |
| "max_distance": 22.0, | |
| "num_conditioning_transitions": 2, | |
| "num_distogram_bins": 64, | |
| "num_pair_update_blocks": 4, | |
| "num_triangle_attention_heads": 4, | |
| "triangle_attention_head_size": 32 | |
| } | |
| ], | |
| "architecture": "boltz2_affinity", | |
| "atom_feature_size": 388, | |
| "atom_hidden_size": 128, | |
| "atom_pair_hidden_size": 16, | |
| "confidence": { | |
| "max_distance": 22.0, | |
| "normalize_single_input": true, | |
| "num_distogram_bins": 64, | |
| "num_pae_bins": 64, | |
| "num_pair_attention_heads": 16, | |
| "num_pairformer_blocks": 8, | |
| "num_pde_bins": 64, | |
| "num_plddt_bins": 50, | |
| "num_triangle_attention_heads": 4, | |
| "pair_dropout": 0.25, | |
| "post_layer_norm": false, | |
| "triangle_attention_head_size": 32 | |
| }, | |
| "denoiser": { | |
| "align_reverse_diffusion": true, | |
| "atom_hidden_size": 128, | |
| "atom_pair_hidden_size": 16, | |
| "num_atom_attention_heads": 4, | |
| "num_atom_decoder_blocks": 3, | |
| "num_atom_encoder_blocks": 3, | |
| "num_conditioning_transitions": 2, | |
| "num_key_atoms": 128, | |
| "num_query_atoms": 32, | |
| "num_token_encoder_attention_heads": 16, | |
| "num_token_encoder_blocks": 24, | |
| "post_layer_norm": false, | |
| "sigma_data": 16.0 | |
| }, | |
| "fourier_embedding_size": 256, | |
| "input_embeddings": { | |
| "add_cyclic_flag": true, | |
| "add_method_conditioning": true, | |
| "add_modified_flag": true, | |
| "add_molecule_type_feature": true, | |
| "num_atom_encoder_attention_heads": 4, | |
| "num_atom_encoder_blocks": 3, | |
| "num_method_types": 12, | |
| "num_molecule_types": 4, | |
| "vocab_size": 72 | |
| }, | |
| "max_conditioning_cutoff": 20.0, | |
| "min_conditioning_cutoff": 4.0, | |
| "num_bond_types": 7, | |
| "num_distogram_bins": 64, | |
| "num_recycles": 6, | |
| "pair_size": 128, | |
| "predict_b_factor": false, | |
| "relative_position_size": 139, | |
| "sampler": { | |
| "churn_rate": 0.8, | |
| "max_noise_level": 160.0, | |
| "min_noise_level": 0.0001, | |
| "noise_scale": 1.003, | |
| "num_sampling_steps": 200, | |
| "rho": 7.0, | |
| "step_scale": 1.5 | |
| }, | |
| "single_size": 384, | |
| "template": null, | |
| "trunk": { | |
| "msa_attention_head_size": 32, | |
| "msa_dropout": 0.15, | |
| "msa_outer_product_hidden_size": 32, | |
| "msa_pair_dropout": 0.25, | |
| "msa_size": 64, | |
| "msa_triangle_attention_head_size": 32, | |
| "num_msa_attention_heads": 8, | |
| "num_msa_blocks": 4, | |
| "num_msa_triangle_attention_heads": 4, | |
| "num_pair_attention_heads": 16, | |
| "num_pairformer_blocks": 64, | |
| "num_trunk_triangle_attention_heads": 4, | |
| "post_layer_norm": false, | |
| "trunk_pair_dropout": 0.25, | |
| "trunk_triangle_attention_head_size": 32, | |
| "use_paired_feature": true | |
| } | |
| } | |