palubad commited on
Commit
dd3db46
·
verified ·
1 Parent(s): 812e4ec

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +22 -3
README.md CHANGED
@@ -7,7 +7,11 @@ license: mit
7
  This study presents a machine learning-based approach to estimate optical vegetation indices and biophysical variables (hereafter referred to as VIs) using synthetic aperture radar (SAR) and ancillary data for forest monitoring.
8
  The best-performing models were Random Forest Regressor (RFR) for LAI and FAPAR and XGBoost (XGB) for EVI and NDVI. These models were trained on temporally and spatially aligned time series (TS) datasets, containing Sentinel-1 SAR data, Sentinel-2 multispectral data, DEM-based features and meteorological variables. It provides an accurate and timely alternative to optical-based VIs.
9
 
10
- These models are part of the paper Paluba, D., Le Saux, B., Sarti, F., Štych, P. (2025): Estimating vegetation indices and biophysical parameters for Central European temperate forests with Sentinel-1 SAR data and machine learning. Published in Big Earth Data
 
 
 
 
11
 
12
  ## Model Details
13
  ### Model Description
@@ -68,6 +72,9 @@ To implement this model:
68
 
69
  The training data is available from the [SAR-based-VIs GitHub repository](https://github.com/palubad/SAR-based-VIs).
70
 
 
 
 
71
  ### Training Procedure
72
 
73
  - Feature Selection: Using permutation feature importance analysis to identify key predictors.
@@ -86,6 +93,13 @@ The training data is available from the [SAR-based-VIs GitHub repository](https:
86
 
87
  #### Training Hyperparameters
88
 
 
 
 
 
 
 
 
89
  For detailed information on hyperparameter optimization, performances, speeds, please see the article Paluba et al. (2025).
90
 
91
  ## Evaluation metrics
@@ -93,7 +107,10 @@ For detailed information on hyperparameter optimization, performances, speeds, p
93
  - Mean Absolute Error (MAE): Primary metric for accuracy.
94
  - Mean Squared Error (MSE): Secondary metric for accuracy.
95
  - R² Score: To assess correlation with Sentinel-2 VIs.
96
- - Transferability Test: Applied to different Central European forests.
 
 
 
97
 
98
  ### Results
99
 
@@ -105,10 +122,12 @@ Best models:
105
  - SAR-based VIs detected forest changes up to 4 days earlier than Sentinel-2 VIs, significantly improving change detection capabilities.
106
  - Adding DEM and meteorological features improved R² by 3-4%.
107
 
 
 
108
 
109
  ## Citation [optional]
110
 
111
- <!-- If there is a paper or blog post introducing the model, the APA and Bibtex information for that should go in this section. -->
112
 
113
  **BibTeX:**
114
 
 
7
  This study presents a machine learning-based approach to estimate optical vegetation indices and biophysical variables (hereafter referred to as VIs) using synthetic aperture radar (SAR) and ancillary data for forest monitoring.
8
  The best-performing models were Random Forest Regressor (RFR) for LAI and FAPAR and XGBoost (XGB) for EVI and NDVI. These models were trained on temporally and spatially aligned time series (TS) datasets, containing Sentinel-1 SAR data, Sentinel-2 multispectral data, DEM-based features and meteorological variables. It provides an accurate and timely alternative to optical-based VIs.
9
 
10
+ These models are part of the paper
11
+ > Paluba, D., Le Saux, B., Sarti, F., Štych, P. (2025): Estimating vegetation indices and biophysical parameters for Central European temperate forests with Sentinel-1 SAR data and machine learning. Published in Big Earth Data
12
+
13
+ ![image/png](https://cdn-uploads.huggingface.co/production/uploads/6798c936ece6b7910c55d1e5/3rueSUVk9bOqsFy4fsD-7.png)
14
+ Figure 1. Methodology used in the paper.
15
 
16
  ## Model Details
17
  ### Model Description
 
72
 
73
  The training data is available from the [SAR-based-VIs GitHub repository](https://github.com/palubad/SAR-based-VIs).
74
 
75
+ ![image/png](https://cdn-uploads.huggingface.co/production/uploads/6798c936ece6b7910c55d1e5/V49cLxspCqdoN_aURaD_c.png)
76
+ Figure 2. Used areas for training and validation (training and validation data are not differentiated in this figure)
77
+
78
  ### Training Procedure
79
 
80
  - Feature Selection: Using permutation feature importance analysis to identify key predictors.
 
93
 
94
  #### Training Hyperparameters
95
 
96
+ ![image/png](https://cdn-uploads.huggingface.co/production/uploads/6798c936ece6b7910c55d1e5/OkAYKL7hrEPIsYW0z4CgA.png)
97
+ Figure 3. Hyperparameter tuning for NDVI.
98
+
99
+ ![image/png](https://cdn-uploads.huggingface.co/production/uploads/6798c936ece6b7910c55d1e5/TMFkP0TrsPlC-ROXcWy1M.png)
100
+ Table 1. Best hyperparameter combinations identified for RFR and XGB. Bolded results represent the
101
+ best achieved results for the VI.
102
+
103
  For detailed information on hyperparameter optimization, performances, speeds, please see the article Paluba et al. (2025).
104
 
105
  ## Evaluation metrics
 
107
  - Mean Absolute Error (MAE): Primary metric for accuracy.
108
  - Mean Squared Error (MSE): Secondary metric for accuracy.
109
  - R² Score: To assess correlation with Sentinel-2 VIs.
110
+ - Transferability Test: Applied to different Central European forests (1,294 healthy deciduous and 1,253 healthy coniferous areas, and 1,195 disturbed areas).
111
+
112
+ ![image/png](https://cdn-uploads.huggingface.co/production/uploads/6798c936ece6b7910c55d1e5/9Kvzn0XgLB0oL6tFduyUb.png)
113
+ Figure 4. Areas used to test the transferability of the models in Central Europe.
114
 
115
  ### Results
116
 
 
122
  - SAR-based VIs detected forest changes up to 4 days earlier than Sentinel-2 VIs, significantly improving change detection capabilities.
123
  - Adding DEM and meteorological features improved R² by 3-4%.
124
 
125
+ Table 2. Best results for RFR and XGB for each VI. Bolded results represent the best achieved results for the VI.
126
+ ![image/png](https://cdn-uploads.huggingface.co/production/uploads/6798c936ece6b7910c55d1e5/1iLMhWwGJo6bbeb9COcSm.png)
127
 
128
  ## Citation [optional]
129
 
130
+ > Paluba, D., Le Saux, B., Sarti, F., Štych, P. (2025): Estimating vegetation indices and biophysical parameters for Central European temperate forests with Sentinel-1 SAR data and machine learning. Published in Big Earth Data
131
 
132
  **BibTeX:**
133