popV
/

tabula_muris_Bone_marrow_Smart-seq2

@@ -6,7 +6,7 @@ tags:
 - genomics
 - single-cell
 - anndata_version:0.11.3
-- python_version:3.11.11
 - popV
 - 'tissue: bone marrow'
 ---
@@ -32,45 +32,45 @@ computed on a 10% random subset of the data that was not used for training.
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| hematopoietic stem cell | 313 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 0.95 | 0.98 | 0.99 | 0.99 |
-| naive B cell | 301 | 0.97 | 0.98 | 0.97 | 0.96 | 0.00 | 0.92 | 0.96 | 0.96 | 0.98 |
-| granulocyte | 292 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |
-| promonocyte | 103 | 0.97 | 0.99 | 0.97 | 0.94 | 0.00 | 0.96 | 0.98 | 0.96 | 0.99 |
-| precursor B cell | 93 | 0.94 | 0.96 | 0.95 | 0.91 | 0.00 | 0.91 | 0.95 | 0.95 | 0.97 |
-| immature B cell | 48 | 0.86 | 0.93 | 0.86 | 0.74 | 0.00 | 0.67 | 0.83 | 0.82 | 0.90 |
-| granulocytopoietic cell | 58 | 0.89 | 0.93 | 0.92 | 0.87 | 0.00 | 0.83 | 0.91 | 0.94 | 0.94 |
-| natural killer cell | 54 | 0.94 | 0.90 | 0.93 | 0.76 | 0.00 | 0.85 | 0.93 | 0.91 | 0.94 |
-| macrophage | 46 | 0.98 | 0.99 | 0.94 | 0.93 | 0.00 | 0.94 | 0.98 | 0.97 | 0.99 |
-| late pro-B cell | 40 | 0.90 | 0.96 | 0.96 | 0.95 | 0.00 | 0.99 | 1.00 | 0.96 | 0.97 |
-| mature alpha-beta T cell | 33 | 0.87 | 0.87 | 0.88 | 0.47 | 0.00 | 0.75 | 0.91 | 0.86 | 0.91 |
-| CD4-positive, alpha-beta T cell | 24 | 0.91 | 0.84 | 0.89 | 0.71 | 0.00 | 0.81 | 0.88 | 0.87 | 0.93 |
-| granulocyte monocyte progenitor cell | 27 | 0.89 | 0.91 | 0.93 | 0.80 | 0.00 | 0.79 | 0.92 | 0.90 | 0.93 |
-| megakaryocyte-erythroid progenitor cell | 6 | 0.91 | 0.80 | 1.00 | 0.46 | 0.00 | 0.52 | 0.92 | 0.83 | 0.91 |
-| early pro-B cell | 9 | 1.00 | 1.00 | 1.00 | 0.95 | 0.00 | 0.95 | 1.00 | 1.00 | 1.00 |
-| basophil | 5 | 1.00 | 1.00 | 1.00 | 0.43 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
 | lymphoid lineage restricted progenitor cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 The train accuracies are computed on the training data.
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| hematopoietic stem cell | 2993 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 0.96 | 0.99 | 0.98 | 0.99 |
-| naive B cell | 2658 | 0.97 | 0.96 | 0.97 | 0.97 | 0.00 | 0.93 | 0.98 | 0.98 | 0.99 |
-| granulocyte | 2600 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |
-| promonocyte | 912 | 0.98 | 0.98 | 0.98 | 0.97 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |
-| precursor B cell | 763 | 0.94 | 0.94 | 0.95 | 0.90 | 0.00 | 0.92 | 0.98 | 0.99 | 0.99 |
-| immature B cell | 541 | 0.90 | 0.90 | 0.87 | 0.80 | 0.00 | 0.75 | 0.94 | 0.95 | 0.97 |
-| granulocytopoietic cell | 425 | 0.91 | 0.93 | 0.96 | 0.93 | 0.00 | 0.87 | 0.94 | 0.96 | 0.97 |
-| natural killer cell | 419 | 0.94 | 0.92 | 0.95 | 0.79 | 0.00 | 0.94 | 1.00 | 1.00 | 0.99 |
-| macrophage | 391 | 0.96 | 0.98 | 0.98 | 0.97 | 0.00 | 0.96 | 0.99 | 0.98 | 0.99 |
-| late pro-B cell | 371 | 0.96 | 0.97 | 0.99 | 0.95 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
-| mature alpha-beta T cell | 297 | 0.88 | 0.90 | 0.91 | 0.61 | 0.00 | 0.88 | 0.98 | 0.98 | 0.97 |
-| CD4-positive, alpha-beta T cell | 256 | 0.93 | 0.90 | 0.93 | 0.75 | 0.00 | 0.92 | 0.98 | 0.98 | 0.99 |
-| granulocyte monocyte progenitor cell | 223 | 0.84 | 0.87 | 0.93 | 0.89 | 0.00 | 0.78 | 0.89 | 0.91 | 0.92 |
-| megakaryocyte-erythroid progenitor cell | 74 | 0.95 | 0.89 | 0.95 | 0.73 | 0.00 | 0.69 | 0.98 | 0.99 | 0.99 |
-| early pro-B cell | 63 | 0.98 | 0.97 | 0.97 | 0.78 | 0.00 | 0.93 | 1.00 | 1.00 | 1.00 |
-| basophil | 66 | 0.97 | 0.89 | 0.96 | 0.73 | 0.00 | 0.75 | 1.00 | 1.00 | 1.00 |
-| lymphoid lineage restricted progenitor cell | 13 | 0.96 | 0.00 | 1.00 | 0.96 | 0.00 | 0.53 | 1.00 | 1.00 | 1.00 |
 </details>

 - genomics
 - single-cell
 - anndata_version:0.11.3
+- python_version:3.11.12
 - popV
 - 'tissue: bone marrow'
 ---
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
+| hematopoietic stem cell | 320 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.94 | 0.98 | 0.98 | 0.99 |
+| naive B cell | 291 | 0.97 | 0.97 | 0.98 | 0.97 | 0.00 | 0.94 | 0.97 | 0.97 | 0.99 |
+| granulocyte | 307 | 0.99 | 0.98 | 0.98 | 0.98 | 0.00 | 0.99 | 0.98 | 0.98 | 0.99 |
+| promonocyte | 110 | 0.98 | 0.99 | 0.96 | 0.96 | 0.00 | 0.95 | 0.99 | 0.98 | 0.99 |
+| precursor B cell | 93 | 0.93 | 0.95 | 0.95 | 0.90 | 0.00 | 0.87 | 0.93 | 0.94 | 0.95 |
+| immature B cell | 48 | 0.84 | 0.91 | 0.88 | 0.74 | 0.00 | 0.68 | 0.82 | 0.85 | 0.88 |
+| granulocytopoietic cell | 56 | 0.95 | 0.95 | 0.93 | 0.89 | 0.00 | 0.95 | 0.92 | 0.94 | 0.97 |
+| natural killer cell | 52 | 0.94 | 0.89 | 0.92 | 0.79 | 0.00 | 0.94 | 0.91 | 0.92 | 0.94 |
+| macrophage | 38 | 0.97 | 0.97 | 0.93 | 0.95 | 0.00 | 0.95 | 0.96 | 0.97 | 0.97 |
+| late pro-B cell | 36 | 0.92 | 0.96 | 0.91 | 0.97 | 0.00 | 0.91 | 0.97 | 0.96 | 0.96 |
+| mature alpha-beta T cell | 36 | 0.87 | 0.88 | 0.87 | 0.48 | 0.00 | 0.80 | 0.88 | 0.85 | 0.90 |
+| CD4-positive, alpha-beta T cell | 25 | 0.90 | 0.89 | 0.94 | 0.68 | 0.00 | 0.86 | 0.89 | 0.88 | 0.94 |
+| granulocyte monocyte progenitor cell | 22 | 0.79 | 0.87 | 0.93 | 0.85 | 0.00 | 0.72 | 0.86 | 0.86 | 0.90 |
+| megakaryocyte-erythroid progenitor cell | 10 | 1.00 | 0.82 | 0.95 | 0.59 | 0.00 | 0.62 | 0.90 | 0.90 | 0.95 |
+| early pro-B cell | 6 | 1.00 | 1.00 | 0.86 | 0.80 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
+| basophil | 2 | 1.00 | 1.00 | 1.00 | 0.50 | 0.00 | 0.36 | 1.00 | 1.00 | 1.00 |
 | lymphoid lineage restricted progenitor cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 The train accuracies are computed on the training data.
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
+| hematopoietic stem cell | 2986 | 0.98 | 0.99 | 0.99 | 0.98 | 0.00 | 0.96 | 0.99 | 0.98 | 0.99 |
+| naive B cell | 2668 | 0.97 | 0.96 | 0.97 | 0.97 | 0.00 | 0.93 | 0.97 | 0.97 | 0.99 |
+| granulocyte | 2585 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
+| promonocyte | 905 | 0.98 | 0.98 | 0.98 | 0.97 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |
+| precursor B cell | 763 | 0.94 | 0.94 | 0.95 | 0.91 | 0.00 | 0.91 | 0.98 | 0.98 | 0.98 |
+| immature B cell | 541 | 0.90 | 0.90 | 0.86 | 0.80 | 0.00 | 0.77 | 0.93 | 0.95 | 0.95 |
+| granulocytopoietic cell | 427 | 0.91 | 0.93 | 0.95 | 0.94 | 0.00 | 0.93 | 0.94 | 0.96 | 0.98 |
+| natural killer cell | 421 | 0.94 | 0.92 | 0.94 | 0.81 | 0.00 | 0.94 | 0.99 | 0.99 | 0.99 |
+| macrophage | 399 | 0.97 | 0.98 | 0.98 | 0.97 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |
+| late pro-B cell | 375 | 0.96 | 0.97 | 0.98 | 0.96 | 0.00 | 0.94 | 1.00 | 1.00 | 0.99 |
+| mature alpha-beta T cell | 294 | 0.88 | 0.90 | 0.91 | 0.65 | 0.00 | 0.87 | 0.97 | 0.97 | 0.97 |
+| CD4-positive, alpha-beta T cell | 255 | 0.94 | 0.91 | 0.95 | 0.71 | 0.00 | 0.92 | 0.98 | 0.99 | 0.99 |
+| granulocyte monocyte progenitor cell | 228 | 0.81 | 0.87 | 0.91 | 0.85 | 0.00 | 0.75 | 0.90 | 0.90 | 0.92 |
+| megakaryocyte-erythroid progenitor cell | 70 | 0.92 | 0.90 | 0.97 | 0.76 | 0.00 | 0.61 | 0.98 | 0.97 | 0.99 |
+| early pro-B cell | 66 | 0.97 | 0.95 | 0.95 | 0.83 | 0.00 | 0.89 | 1.00 | 0.99 | 0.99 |
+| basophil | 69 | 0.95 | 0.89 | 0.95 | 0.82 | 0.00 | 0.75 | 1.00 | 0.99 | 1.00 |
+| lymphoid lineage restricted progenitor cell | 13 | 1.00 | 0.00 | 1.00 | 0.71 | 0.00 | 0.59 | 1.00 | 1.00 | 1.00 |
 </details>