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Browse files- .gitattributes +1 -0
- OnClass.data-00000-of-00001 +3 -0
- OnClass.index +0 -0
- OnClass.meta +0 -0
- OnClass.npz +3 -0
- accuracies.json +4 -0
- celltypist.pkl +3 -0
- checkpoint +2 -0
- harmony_knn_classifier.joblib +3 -0
- obo_dag.joblib +3 -0
- popv_output/predictions.csv +0 -0
- preprocessing.json +0 -0
- pynndescent_index.joblib +3 -0
- scanvi/model.pt +3 -0
- scvi/model.pt +3 -0
- scvi_knn_classifier.joblib +3 -0
- svm_classifier_cuml.joblib +3 -0
- xgboost_classifier.model +3 -0
.gitattributes
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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
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OnClass.data-00000-of-00001
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version https://git-lfs.github.com/spec/v1
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oid sha256:980d1f62873a2e29fb572578ff164421f597dcb6ecbd4e7411996027816ed44a
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size 27239224
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OnClass.index
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Binary file (222 Bytes). View file
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OnClass.meta
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OnClass.npz
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version https://git-lfs.github.com/spec/v1
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oid sha256:6cf7c9bc951d590a25ef575df799c1aa859ad14bb078fc9e7decff6d29369c95
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size 144124622
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accuracies.json
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{
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"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| endothelial cell of coronary artery | 336 | 0.98 | 0.97 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| fibroblast of cardiac tissue | 249 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| leukocyte | 86 | 1.00 | 0.99 | 0.99 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| endocardial cell | 67 | 0.95 | 0.96 | 0.97 | 0.98 | 0.00 | 0.98 | 0.97 | 0.96 | 0.97 |\n| smooth muscle cell | 43 | 0.96 | 0.95 | 0.95 | 0.95 | 0.00 | 0.98 | 0.98 | 0.97 | 0.96 |\n| erythrocyte | 31 | 0.91 | 0.81 | 0.93 | 0.95 | 0.00 | 0.95 | 1.00 | 0.98 | 0.95 |\n| cardiac muscle cell | 36 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| cardiac neuron | 5 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 0.91 | 1.00 | 1.00 |\n| mast cell | 9 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |",
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"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| endothelial cell of coronary artery | 2957 | 0.98 | 0.97 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| fibroblast of cardiac tissue | 2160 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| leukocyte | 864 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| endocardial cell | 611 | 0.94 | 0.96 | 0.98 | 0.97 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |\n| smooth muscle cell | 393 | 0.95 | 0.94 | 0.97 | 0.95 | 0.00 | 0.98 | 0.99 | 0.99 | 0.98 |\n| erythrocyte | 325 | 0.96 | 0.88 | 0.97 | 0.97 | 0.00 | 0.99 | 0.99 | 0.97 | 0.98 |\n| cardiac muscle cell | 298 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| cardiac neuron | 76 | 0.96 | 0.94 | 0.99 | 0.91 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| mast cell | 67 | 1.00 | 1.00 | 0.99 | 0.97 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |"
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}
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celltypist.pkl
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version https://git-lfs.github.com/spec/v1
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oid sha256:9e1a2277c643a116bf27e2a70be3e5517b010ab7ffed19176b1c142dae10d061
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size 325415
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checkpoint
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model_checkpoint_path: "OnClass"
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all_model_checkpoint_paths: "OnClass"
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harmony_knn_classifier.joblib
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version https://git-lfs.github.com/spec/v1
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oid sha256:bb0ebb91f8fe02afb5845e31930d344da45a50b1275111aeadd8797151fd3c32
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size 5943045
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obo_dag.joblib
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oid sha256:88b6c19fc939f3c304978a10ef8b7cc6ba69d2d4a0a0613df8312b4ee3a26313
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size 321386
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popv_output/predictions.csv
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preprocessing.json
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pynndescent_index.joblib
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oid sha256:39352910f2e241477e9333a12bda6b773fb0d804d8b77d6c8651efd920f66291
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size 6321961
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scanvi/model.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:66cc807eb85af00295cd086ece358427fdbe941199d171d149cd393510e2ac11
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scvi/model.pt
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oid sha256:4b67d9987c4463c9e945c3b838df99f0457fdf42b8a0dc98fe8024a63916586a
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size 10906301
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scvi_knn_classifier.joblib
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oid sha256:f6ea8769013ab4340d20171a1c2b7ff4a6e752a5ce9e9d7f9faddf9e00a2b96e
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size 3295765
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svm_classifier_cuml.joblib
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oid sha256:cd707847eb3a5119817a3e4d7404139217a3fd450b082dc33c10fb4b389a9bbd
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size 154955
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xgboost_classifier.model
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oid sha256:5837ddb9525b4868de63e3e14d52f41c229a0424cb9f6bbf4c28b2d02478b526
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size 2203394
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