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popV
/
tabula_muris_Heart_Smart-seq2

Joblib
popV
biology
genomics
single-cell
AnnData:0.12.2
scikit_learn:1.7.2
organism:Mus musculus
Python:3.12.8
popV:0.6.0
tissue: heart
Model card Files
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@@ -6,7 +6,7 @@ tags:
6
  - genomics
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  - single-cell
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  - anndata_version:0.11.3
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- - python_version:3.11.11
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  - popV
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  - 'tissue: heart'
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  ---
@@ -32,33 +32,33 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | fibroblast of cardiac tissue | 384 | 0.98 | 0.99 | 0.99 | 0.98 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |
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- | endothelial cell of coronary artery | 265 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.99 | 0.99 |
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- | monocyte | 131 | 0.97 | 0.99 | 0.97 | 0.97 | 0.00 | 0.94 | 0.98 | 0.99 | 0.99 |
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- | regular atrial cardiac myocyte | 30 | 0.73 | 0.83 | 0.85 | 0.76 | 0.00 | 0.60 | 0.79 | 0.85 | 0.90 |
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- | endocardial cell | 31 | 0.97 | 1.00 | 1.00 | 1.00 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
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- | B cell | 38 | 0.96 | 0.93 | 0.95 | 0.89 | 0.00 | 0.90 | 1.00 | 0.97 | 1.00 |
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- | cardiac valve cell | 29 | 0.98 | 0.98 | 1.00 | 0.93 | 0.00 | 0.92 | 0.98 | 1.00 | 1.00 |
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- | T cell | 15 | 0.88 | 1.00 | 0.97 | 0.93 | 0.00 | 0.97 | 1.00 | 0.97 | 1.00 |
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- | regular ventricular cardiac myocyte | 13 | 0.70 | 0.96 | 0.89 | 0.76 | 0.00 | 0.79 | 0.90 | 0.93 | 0.96 |
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- | smooth muscle cell | 9 | 0.84 | 0.89 | 0.90 | 1.00 | 0.00 | 0.90 | 0.84 | 0.95 | 0.90 |
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- | macrophage | 5 | 0.89 | 0.33 | 0.83 | 0.62 | 0.00 | 0.48 | 1.00 | 0.91 | 1.00 |
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  The train accuracies are computed on the training data.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | fibroblast of cardiac tissue | 3327 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |
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- | endothelial cell of coronary artery | 2429 | 0.97 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |
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- | monocyte | 1148 | 0.95 | 0.97 | 0.97 | 0.98 | 0.00 | 0.95 | 0.98 | 0.98 | 0.98 |
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- | regular atrial cardiac myocyte | 362 | 0.79 | 0.87 | 0.89 | 0.82 | 0.00 | 0.74 | 0.93 | 0.93 | 0.93 |
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- | endocardial cell | 344 | 0.96 | 0.98 | 0.98 | 0.96 | 0.00 | 0.96 | 0.98 | 0.96 | 0.98 |
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- | B cell | 322 | 0.96 | 0.97 | 0.97 | 0.92 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |
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- | cardiac valve cell | 286 | 0.96 | 0.97 | 0.97 | 0.92 | 0.00 | 0.91 | 0.99 | 0.99 | 0.99 |
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- | T cell | 182 | 0.97 | 0.98 | 0.98 | 0.92 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
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- | regular ventricular cardiac myocyte | 130 | 0.77 | 0.93 | 0.91 | 0.82 | 0.00 | 0.88 | 0.97 | 0.99 | 0.99 |
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- | smooth muscle cell | 94 | 0.93 | 0.95 | 0.92 | 0.82 | 0.00 | 0.94 | 0.99 | 0.99 | 0.98 |
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- | macrophage | 78 | 0.87 | 0.74 | 0.92 | 0.79 | 0.00 | 0.78 | 0.99 | 0.94 | 0.97 |
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  </details>
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6
  - genomics
7
  - single-cell
8
  - anndata_version:0.11.3
9
+ - python_version:3.11.12
10
  - popV
11
  - 'tissue: heart'
12
  ---
 
32
 
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | fibroblast of cardiac tissue | 393 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 0.97 | 0.99 | 0.99 | 1.00 |
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+ | endothelial cell of coronary artery | 265 | 0.97 | 0.99 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.99 | 0.99 |
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+ | monocyte | 124 | 0.98 | 0.99 | 0.97 | 0.97 | 0.00 | 0.98 | 0.97 | 0.96 | 0.98 |
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+ | regular atrial cardiac myocyte | 28 | 0.81 | 0.86 | 0.87 | 0.70 | 0.00 | 0.54 | 0.83 | 0.88 | 0.89 |
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+ | endocardial cell | 33 | 0.99 | 0.99 | 0.99 | 0.97 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |
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+ | B cell | 37 | 0.93 | 0.96 | 0.93 | 0.85 | 0.00 | 0.99 | 0.99 | 0.96 | 1.00 |
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+ | cardiac valve cell | 27 | 1.00 | 1.00 | 1.00 | 0.95 | 0.00 | 0.96 | 1.00 | 1.00 | 1.00 |
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+ | T cell | 16 | 0.88 | 1.00 | 0.97 | 0.83 | 0.00 | 1.00 | 0.97 | 0.94 | 1.00 |
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+ | regular ventricular cardiac myocyte | 14 | 0.97 | 0.97 | 0.93 | 0.67 | 0.00 | 0.85 | 0.93 | 0.93 | 0.97 |
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+ | smooth muscle cell | 6 | 0.92 | 1.00 | 0.92 | 0.71 | 0.00 | 0.80 | 0.92 | 1.00 | 0.92 |
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+ | macrophage | 7 | 0.80 | 0.73 | 0.88 | 0.47 | 0.00 | 0.74 | 0.93 | 0.82 | 1.00 |
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47
  The train accuracies are computed on the training data.
48
 
49
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
50
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
51
+ | fibroblast of cardiac tissue | 3318 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 1.00 |
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+ | endothelial cell of coronary artery | 2429 | 0.97 | 0.98 | 0.99 | 0.98 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
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+ | monocyte | 1155 | 0.97 | 0.97 | 0.97 | 0.97 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |
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+ | regular atrial cardiac myocyte | 364 | 0.84 | 0.87 | 0.90 | 0.81 | 0.00 | 0.73 | 0.93 | 0.94 | 0.94 |
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+ | endocardial cell | 342 | 0.97 | 0.98 | 0.98 | 0.96 | 0.00 | 0.94 | 0.99 | 0.98 | 0.99 |
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+ | B cell | 323 | 0.97 | 0.96 | 0.97 | 0.89 | 0.00 | 0.97 | 1.00 | 0.99 | 0.99 |
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+ | cardiac valve cell | 288 | 0.96 | 0.97 | 0.97 | 0.91 | 0.00 | 0.96 | 1.00 | 0.99 | 0.99 |
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+ | T cell | 181 | 0.96 | 0.99 | 0.98 | 0.91 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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+ | regular ventricular cardiac myocyte | 129 | 0.95 | 0.93 | 0.93 | 0.76 | 0.00 | 0.81 | 0.97 | 0.99 | 0.98 |
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+ | smooth muscle cell | 97 | 0.90 | 0.93 | 0.92 | 0.77 | 0.00 | 0.89 | 0.99 | 0.98 | 0.97 |
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+ | macrophage | 76 | 0.87 | 0.75 | 0.92 | 0.72 | 0.00 | 0.70 | 0.99 | 0.96 | 0.98 |
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  </details>
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