canergen's picture
popV version: 0.6.0
1de3f4c verified
{
"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| kidney collecting duct epithelial cell | 32 | 0.95 | 0.93 | 0.98 | 0.90 | 0.00 | 0.89 | 0.98 | 0.97 | 0.98 |\n| epithelial cell of proximal tubule | 37 | 0.94 | 0.91 | 0.99 | 0.85 | 0.00 | 0.85 | 0.99 | 0.97 | 0.97 |\n| fenestrated endothelial cell | 15 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| kidney collecting duct principal cell | 8 | 0.94 | 0.80 | 0.86 | 0.29 | 0.00 | 0.36 | 0.94 | 1.00 | 1.00 |\n| macrophage | 13 | 0.96 | 0.92 | 0.96 | 0.96 | 0.00 | 0.96 | 1.00 | 1.00 | 1.00 |\n| kidney loop of Henle ascending limb epithelial cell | 12 | 0.96 | 0.92 | 0.92 | 0.71 | 0.00 | 0.75 | 1.00 | 1.00 | 1.00 |\n| mesangial cell | 12 | 0.92 | 0.61 | 0.96 | 0.44 | 0.00 | 0.58 | 0.87 | 0.91 | 0.96 |\n| B cell | 2 | 1.00 | 0.40 | 0.80 | 0.25 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |\n| T cell | 9 | 0.95 | 0.86 | 1.00 | 0.76 | 0.00 | 0.86 | 1.00 | 0.95 | 1.00 |\n| kidney interstitial fibroblast | 3 | 0.80 | 0.00 | 0.80 | 0.50 | 0.00 | 0.00 | 0.50 | 0.80 | 0.50 |",
"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| kidney collecting duct epithelial cell | 400 | 0.96 | 0.94 | 0.93 | 0.88 | 0.00 | 0.89 | 1.00 | 1.00 | 0.99 |\n| epithelial cell of proximal tubule | 351 | 0.95 | 0.94 | 0.92 | 0.86 | 0.00 | 0.88 | 1.00 | 1.00 | 0.99 |\n| fenestrated endothelial cell | 245 | 1.00 | 0.97 | 0.99 | 0.99 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| kidney collecting duct principal cell | 145 | 0.84 | 0.82 | 0.84 | 0.60 | 0.00 | 0.54 | 1.00 | 1.00 | 0.95 |\n| macrophage | 137 | 0.99 | 0.98 | 0.99 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| kidney loop of Henle ascending limb epithelial cell | 131 | 0.85 | 0.87 | 0.87 | 0.65 | 0.00 | 0.70 | 1.00 | 1.00 | 0.95 |\n| mesangial cell | 79 | 0.91 | 0.72 | 0.85 | 0.74 | 0.00 | 0.85 | 1.00 | 1.00 | 0.99 |\n| B cell | 78 | 0.99 | 0.87 | 0.96 | 0.72 | 0.00 | 0.84 | 1.00 | 1.00 | 1.00 |\n| T cell | 70 | 1.00 | 0.95 | 0.97 | 0.83 | 0.00 | 0.88 | 1.00 | 1.00 | 1.00 |\n| kidney interstitial fibroblast | 13 | 1.00 | 0.00 | 0.56 | 0.79 | 0.00 | 0.87 | 1.00 | 1.00 | 1.00 |"
}