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README.md

@@ -6,7 +6,7 @@ tags:
 - genomics
 - single-cell
 - anndata_version:0.11.3
-- python_version:3.11.11
+- python_version:3.11.12
 - popV
 - 'tissue: kidney'
 ---
@@ -32,29 +32,29 @@ computed on a 10% random subset of the data that was not used for training.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| kidney collecting duct epithelial cell | 32 | 0.95 | 0.76 | 0.95 | 0.49 | 0.00 | 0.70 | 0.98 | 0.98 | 1.00 |
-| epithelial cell of proximal tubule | 37 | 0.93 | 0.95 | 0.87 | 0.35 | 0.00 | 0.10 | 0.96 | 0.97 | 1.00 |
-| kidney collecting duct principal cell | 8 | 0.63 | 0.46 | 0.71 | 0.36 | 0.00 | 0.33 | 1.00 | 0.89 | 0.94 |
-| macrophage | 13 | 0.92 | 0.89 | 0.96 | 0.48 | 0.00 | 0.92 | 1.00 | 1.00 | 1.00 |
-| kidney loop of Henle ascending limb epithelial cell | 12 | 0.70 | 0.74 | 0.85 | 0.61 | 0.00 | 0.74 | 1.00 | 1.00 | 0.96 |
-| mesangial cell | 12 | 0.54 | 0.88 | 0.77 | 0.50 | 0.00 | 0.43 | 0.59 | 0.54 | 0.60 |
-| B cell | 2 | 0.67 | 0.67 | 0.80 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |
-| T cell | 9 | 0.95 | 1.00 | 0.95 | 0.43 | 0.00 | 0.51 | 1.00 | 1.00 | 1.00 |
-| kidney interstitial fibroblast | 3 | 0.80 | 0.80 | 0.80 | 0.00 | 0.00 | 0.20 | 0.50 | 0.80 | 0.80 |
+| kidney collecting duct epithelial cell | 25 | 0.96 | 0.69 | 0.89 | 0.56 | 0.00 | 0.58 | 0.96 | 0.98 | 0.98 |
+| epithelial cell of proximal tubule | 40 | 0.95 | 0.96 | 0.83 | 0.48 | 0.00 | 0.13 | 0.98 | 0.99 | 1.00 |
+| kidney collecting duct principal cell | 8 | 0.71 | 0.63 | 0.71 | 0.67 | 0.00 | 0.20 | 1.00 | 0.94 | 1.00 |
+| macrophage | 13 | 0.92 | 0.92 | 0.92 | 0.75 | 0.00 | 0.92 | 1.00 | 1.00 | 1.00 |
+| kidney loop of Henle ascending limb epithelial cell | 12 | 0.78 | 0.73 | 0.85 | 0.56 | 0.00 | 0.71 | 1.00 | 1.00 | 1.00 |
+| mesangial cell | 11 | 0.49 | 0.83 | 0.80 | 0.48 | 0.00 | 0.44 | 0.45 | 0.45 | 0.49 |
+| B cell | 2 | 0.67 | 0.67 | 0.50 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |
+| T cell | 9 | 0.95 | 1.00 | 0.72 | 0.40 | 0.00 | 0.47 | 1.00 | 1.00 | 0.95 |
+| kidney interstitial fibroblast | 4 | 0.86 | 0.86 | 0.86 | 0.29 | 0.00 | 0.33 | 0.67 | 0.86 | 0.86 |
 
 The train accuracies are computed on the training data.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| kidney collecting duct epithelial cell | 400 | 0.95 | 0.76 | 0.94 | 0.86 | 0.00 | 0.70 | 1.00 | 1.00 | 0.99 |
-| epithelial cell of proximal tubule | 351 | 0.94 | 0.93 | 0.79 | 0.81 | 0.00 | 0.02 | 0.97 | 1.00 | 0.99 |
-| kidney collecting duct principal cell | 145 | 0.87 | 0.74 | 0.84 | 0.69 | 0.00 | 0.41 | 1.00 | 0.99 | 0.98 |
-| macrophage | 137 | 0.96 | 0.99 | 0.98 | 0.61 | 0.00 | 0.94 | 1.00 | 1.00 | 1.00 |
-| kidney loop of Henle ascending limb epithelial cell | 131 | 0.84 | 0.78 | 0.87 | 0.69 | 0.00 | 0.57 | 1.00 | 1.00 | 0.97 |
-| mesangial cell | 79 | 0.36 | 0.86 | 0.62 | 0.54 | 0.00 | 0.26 | 0.42 | 0.40 | 0.40 |
-| B cell | 78 | 0.92 | 0.96 | 0.91 | 0.56 | 0.00 | 0.31 | 1.00 | 0.97 | 0.99 |
-| T cell | 70 | 0.98 | 0.78 | 0.80 | 0.35 | 0.00 | 0.33 | 1.00 | 1.00 | 0.94 |
-| kidney interstitial fibroblast | 13 | 1.00 | 1.00 | 0.70 | 0.80 | 0.00 | 0.31 | 1.00 | 1.00 | 1.00 |
+| kidney collecting duct epithelial cell | 408 | 0.95 | 0.77 | 0.94 | 0.82 | 0.00 | 0.69 | 1.00 | 1.00 | 0.99 |
+| epithelial cell of proximal tubule | 350 | 0.94 | 0.94 | 0.83 | 0.77 | 0.00 | 0.08 | 0.97 | 0.99 | 0.98 |
+| kidney collecting duct principal cell | 146 | 0.86 | 0.75 | 0.85 | 0.73 | 0.00 | 0.13 | 1.00 | 0.98 | 0.95 |
+| macrophage | 138 | 0.96 | 0.98 | 0.99 | 0.79 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
+| kidney loop of Henle ascending limb epithelial cell | 129 | 0.88 | 0.76 | 0.87 | 0.74 | 0.00 | 0.66 | 1.00 | 1.00 | 0.94 |
+| mesangial cell | 79 | 0.36 | 0.88 | 0.78 | 0.53 | 0.00 | 0.65 | 0.42 | 0.42 | 0.42 |
+| B cell | 79 | 0.94 | 0.97 | 0.95 | 0.60 | 0.00 | 0.41 | 1.00 | 0.96 | 1.00 |
+| T cell | 70 | 1.00 | 0.86 | 0.53 | 0.32 | 0.00 | 0.33 | 1.00 | 1.00 | 0.80 |
+| kidney interstitial fibroblast | 12 | 1.00 | 1.00 | 0.74 | 0.71 | 0.00 | 0.77 | 1.00 | 1.00 | 1.00 |
 
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