canergen's picture
popV version: 0.6.0
a4fd3bd verified
{
"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| skeletal muscle satellite cell | 191 | 0.98 | 0.97 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| mesenchymal stem cell | 72 | 0.98 | 0.97 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| endothelial cell | 41 | 1.00 | 0.99 | 0.99 | 0.98 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| macrophage | 31 | 0.92 | 0.88 | 0.87 | 0.88 | 0.00 | 0.89 | 0.97 | 0.92 | 0.97 |\n| B cell | 20 | 0.90 | 0.81 | 0.85 | 0.87 | 0.00 | 0.85 | 0.92 | 0.90 | 0.92 |\n| T cell | 8 | 0.88 | 0.88 | 0.82 | 0.75 | 0.00 | 0.71 | 0.88 | 0.93 | 0.88 |",
"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| skeletal muscle satellite cell | 1632 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |\n| mesenchymal stem cell | 859 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| endothelial cell | 410 | 0.99 | 0.99 | 0.98 | 0.97 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| macrophage | 280 | 0.91 | 0.90 | 0.89 | 0.90 | 0.00 | 0.92 | 0.99 | 0.97 | 0.95 |\n| B cell | 164 | 0.93 | 0.87 | 0.92 | 0.89 | 0.00 | 0.95 | 1.00 | 1.00 | 0.99 |\n| T cell | 124 | 0.96 | 0.93 | 0.94 | 0.94 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |"
}