| { | |
| "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| classical monocyte | 793 | 0.93 | 0.93 | 0.94 | 0.95 | 0.00 | 0.87 | 0.90 | 0.92 | 0.95 |\n| bronchial smooth muscle cell | 236 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.97 | 0.98 |\n| intermediate monocyte | 177 | 0.69 | 0.56 | 0.73 | 0.68 | 0.00 | 0.68 | 0.65 | 0.70 | 0.78 |\n| fibroblast of lung | 149 | 0.98 | 0.99 | 0.98 | 0.95 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |\n| B cell | 149 | 1.00 | 1.00 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |\n| alveolar macrophage | 137 | 0.99 | 0.99 | 0.99 | 0.97 | 0.00 | 0.93 | 0.97 | 0.99 | 0.99 |\n| natural killer cell | 125 | 0.98 | 0.99 | 0.97 | 0.99 | 0.00 | 0.97 | 0.98 | 0.99 | 0.99 |\n| lung macrophage | 115 | 0.96 | 0.91 | 0.96 | 0.96 | 0.00 | 0.94 | 0.94 | 0.93 | 0.95 |\n| non-classical monocyte | 97 | 0.94 | 0.86 | 0.89 | 0.82 | 0.00 | 0.90 | 0.95 | 0.94 | 0.96 |\n| CD8-positive, alpha-beta T cell | 86 | 0.88 | 0.89 | 0.87 | 0.91 | 0.00 | 0.89 | 0.87 | 0.89 | 0.90 |\n| neutrophil | 65 | 1.00 | 0.95 | 0.98 | 0.96 | 0.00 | 0.92 | 0.99 | 1.00 | 0.98 |\n| CD4-positive, alpha-beta T cell | 52 | 0.77 | 0.83 | 0.81 | 0.85 | 0.00 | 0.83 | 0.79 | 0.82 | 0.86 |\n| adventitial cell | 54 | 0.94 | 0.96 | 0.92 | 0.87 | 0.00 | 0.89 | 0.94 | 0.93 | 0.93 |\n| mature NK T cell | 41 | 0.87 | 0.93 | 0.94 | 0.93 | 0.00 | 0.94 | 0.93 | 0.86 | 0.94 |\n| vein endothelial cell | 32 | 0.94 | 0.90 | 0.93 | 0.93 | 0.00 | 0.89 | 0.98 | 0.81 | 0.94 |\n| T cell | 28 | 0.96 | 0.98 | 0.98 | 0.98 | 0.00 | 0.88 | 0.95 | 0.93 | 0.98 |\n| myeloid dendritic cell | 22 | 0.80 | 0.90 | 0.90 | 0.87 | 0.00 | 0.51 | 0.70 | 0.78 | 0.85 |\n| pulmonary interstitial fibroblast | 17 | 0.97 | 1.00 | 0.94 | 0.94 | 0.00 | 0.94 | 0.97 | 1.00 | 0.97 |\n| basophil | 9 | 0.95 | 0.71 | 0.71 | 0.62 | 0.00 | 0.67 | 0.71 | 0.75 | 0.82 |\n| pulmonary alveolar type 2 cell | 6 | 0.86 | 0.86 | 0.86 | 0.75 | 0.00 | 0.86 | 0.86 | 0.86 | 0.86 |\n| regulatory T cell | 13 | 0.00 | 0.82 | 0.70 | 0.87 | 0.00 | 0.89 | 0.88 | 0.82 | 0.87 |\n| smooth muscle cell of the pulmonary artery | 12 | 0.81 | 0.86 | 0.86 | 0.86 | 0.00 | 0.79 | 0.87 | 0.75 | 0.87 |\n| plasmacytoid dendritic cell | 11 | 0.86 | 0.90 | 0.90 | 0.90 | 0.00 | 0.83 | 0.95 | 0.95 | 0.95 |\n| pericyte | 6 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| ciliated columnar cell of tracheobronchial tree | 9 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| plasma cell | 1 | 1.00 | 1.00 | 1.00 | 0.67 | 0.00 | 0.67 | 0.67 | 1.00 | 1.00 |\n| dendritic cell | 3 | 0.29 | 0.40 | 0.50 | 0.25 | 0.00 | 0.20 | 0.50 | 0.29 | 0.40 |\n| endothelial cell of lymphatic vessel | 5 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.91 | 1.00 | 0.89 | 1.00 |\n| club cell | 4 | 0.67 | 0.00 | 0.67 | 0.00 | 0.00 | 0.67 | 0.67 | 0.67 | 0.67 |\n| lung neuroendocrine cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |", | |
| "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| classical monocyte | 7129 | 0.93 | 0.93 | 0.94 | 0.95 | 0.00 | 0.88 | 0.92 | 0.92 | 0.96 |\n| bronchial smooth muscle cell | 2103 | 0.98 | 0.99 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| intermediate monocyte | 1572 | 0.69 | 0.59 | 0.76 | 0.72 | 0.00 | 0.72 | 0.71 | 0.74 | 0.86 |\n| fibroblast of lung | 1374 | 0.98 | 0.98 | 0.97 | 0.96 | 0.00 | 0.97 | 1.00 | 0.99 | 0.99 |\n| B cell | 1352 | 1.00 | 1.00 | 0.98 | 0.99 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| alveolar macrophage | 1229 | 0.99 | 0.98 | 0.98 | 0.97 | 0.00 | 0.95 | 0.99 | 0.98 | 0.99 |\n| natural killer cell | 1068 | 0.99 | 0.99 | 0.93 | 0.98 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| lung macrophage | 1042 | 0.96 | 0.92 | 0.96 | 0.95 | 0.00 | 0.96 | 0.96 | 0.96 | 0.98 |\n| non-classical monocyte | 913 | 0.93 | 0.86 | 0.91 | 0.84 | 0.00 | 0.96 | 0.96 | 0.97 | 0.98 |\n| CD8-positive, alpha-beta T cell | 784 | 0.87 | 0.91 | 0.85 | 0.90 | 0.00 | 0.91 | 0.97 | 0.98 | 0.94 |\n| neutrophil | 487 | 0.99 | 0.97 | 0.96 | 0.97 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |\n| CD4-positive, alpha-beta T cell | 499 | 0.75 | 0.83 | 0.80 | 0.83 | 0.00 | 0.88 | 0.97 | 0.98 | 0.89 |\n| adventitial cell | 472 | 0.93 | 0.95 | 0.94 | 0.91 | 0.00 | 0.91 | 0.99 | 0.96 | 0.97 |\n| mature NK T cell | 379 | 0.83 | 0.88 | 0.82 | 0.89 | 0.00 | 0.94 | 0.98 | 0.98 | 0.95 |\n| vein endothelial cell | 288 | 0.94 | 0.96 | 0.95 | 0.92 | 0.00 | 0.95 | 0.97 | 0.95 | 0.98 |\n| T cell | 223 | 0.94 | 0.94 | 0.91 | 0.94 | 0.00 | 0.91 | 0.99 | 0.98 | 0.98 |\n| myeloid dendritic cell | 223 | 0.83 | 0.84 | 0.90 | 0.89 | 0.00 | 0.70 | 0.84 | 0.86 | 0.90 |\n| pulmonary interstitial fibroblast | 205 | 0.97 | 0.99 | 0.95 | 0.97 | 0.00 | 0.96 | 0.98 | 0.99 | 0.98 |\n| basophil | 121 | 0.96 | 0.89 | 0.95 | 0.87 | 0.00 | 0.82 | 0.98 | 0.98 | 1.00 |\n| pulmonary alveolar type 2 cell | 119 | 0.99 | 0.99 | 0.99 | 0.97 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |\n| regulatory T cell | 110 | 0.00 | 0.66 | 0.59 | 0.67 | 0.00 | 0.88 | 0.99 | 0.99 | 0.86 |\n| smooth muscle cell of the pulmonary artery | 86 | 0.86 | 0.93 | 0.93 | 0.91 | 0.00 | 0.92 | 0.97 | 0.96 | 0.97 |\n| plasmacytoid dendritic cell | 64 | 0.86 | 0.93 | 0.85 | 0.90 | 0.00 | 0.91 | 0.98 | 0.99 | 0.98 |\n| pericyte | 55 | 0.99 | 0.99 | 0.96 | 0.99 | 0.00 | 0.98 | 0.99 | 1.00 | 0.99 |\n| ciliated columnar cell of tracheobronchial tree | 48 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |\n| plasma cell | 48 | 0.93 | 0.98 | 0.95 | 0.96 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |\n| dendritic cell | 42 | 0.44 | 0.77 | 0.76 | 0.76 | 0.00 | 0.51 | 0.82 | 0.88 | 0.84 |\n| endothelial cell of lymphatic vessel | 36 | 0.99 | 0.97 | 0.93 | 0.89 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| club cell | 11 | 0.58 | 0.42 | 0.53 | 0.53 | 0.00 | 0.83 | 1.00 | 0.96 | 0.78 |\n| lung neuroendocrine cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.89 | 1.00 | 1.00 | 1.00 |" | |
| } |