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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| bronchial smooth muscle cell | 196 | 0.98 | 0.97 | 0.98 | 0.96 | 0.00 | 0.93 | 0.98 | 0.97 | 0.99 |\n| fibroblast of lung | 54 | 0.96 | 0.99 | 0.98 | 0.73 | 0.00 | 0.69 | 0.96 | 0.99 | 0.99 |\n| myeloid dendritic cell | 31 | 0.92 | 0.97 | 0.97 | 0.81 | 0.00 | 0.89 | 0.98 | 0.98 | 0.98 |\n| adventitial cell | 38 | 0.93 | 1.00 | 0.97 | 0.44 | 0.00 | 0.00 | 0.99 | 1.00 | 0.99 |\n| B cell | 25 | 0.98 | 0.98 | 1.00 | 0.83 | 0.00 | 0.88 | 0.98 | 0.98 | 0.98 |\n| classical monocyte | 19 | 0.90 | 0.97 | 0.90 | 0.77 | 0.00 | 0.93 | 0.88 | 0.88 | 0.93 |\n| vein endothelial cell | 14 | 0.93 | 0.96 | 0.92 | 0.19 | 0.00 | 0.32 | 0.88 | 0.87 | 0.93 |\n| non-classical monocyte | 14 | 1.00 | 1.00 | 1.00 | 0.77 | 0.00 | 0.80 | 0.97 | 1.00 | 0.97 |\n| neutrophil | 18 | 1.00 | 1.00 | 0.97 | 0.91 | 0.00 | 0.94 | 1.00 | 0.94 | 1.00 |\n| CD8-positive, alpha-beta T cell | 9 | 0.82 | 0.82 | 0.94 | 0.38 | 0.00 | 0.00 | 0.84 | 0.78 | 0.82 |\n| smooth muscle cell of the pulmonary artery | 9 | 0.95 | 1.00 | 0.95 | 0.38 | 0.00 | 0.62 | 0.90 | 0.90 | 1.00 |\n| endothelial cell of lymphatic vessel | 12 | 0.96 | 0.96 | 0.96 | 0.92 | 0.00 | 0.85 | 0.92 | 1.00 | 0.96 |\n| dendritic cell | 5 | 1.00 | 1.00 | 1.00 | 0.50 | 0.00 | 0.83 | 1.00 | 0.83 | 1.00 |\n| CD4-positive, alpha-beta T cell | 3 | 0.75 | 0.86 | 1.00 | 0.57 | 0.00 | 0.00 | 0.86 | 0.86 | 0.86 |\n| ciliated columnar cell of tracheobronchial tree | 8 | 1.00 | 0.94 | 1.00 | 1.00 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |\n| natural killer cell | 6 | 1.00 | 1.00 | 1.00 | 0.62 | 0.00 | 0.31 | 1.00 | 0.80 | 1.00 |\n| pulmonary interstitial fibroblast | 4 | 0.89 | 1.00 | 1.00 | 0.55 | 0.00 | 0.22 | 1.00 | 0.80 | 0.89 |\n| regulatory T cell | 5 | 0.89 | 0.80 | 0.91 | 0.00 | 0.00 | 0.00 | 0.89 | 0.89 | 0.89 |\n| leukocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 0.00 |\n| pericyte | 7 | 0.86 | 0.73 | 0.92 | 0.67 | 0.00 | 0.00 | 1.00 | 0.92 | 0.92 |\n| respiratory basal cell | 8 | 1.00 | 1.00 | 1.00 | 0.80 | 0.00 | 0.67 | 0.94 | 0.94 | 0.84 |\n| T cell | 6 | 0.92 | 0.83 | 0.91 | 0.00 | 0.00 | 0.00 | 0.91 | 0.92 | 1.00 |\n| plasma cell | 1 | 1.00 | 1.00 | 0.67 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |\n| club cell | 3 | 0.15 | 0.21 | 0.16 | 0.17 | 0.00 | 0.08 | 0.13 | 0.14 | 0.17 |\n| intermediate monocyte | 2 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 |\n| lymphocyte | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| lung macrophage | 1 | 0.67 | 0.67 | 1.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 1 | 0.00 | 0.67 | 1.00 | 0.00 | 0.00 | 0.00 | 0.67 | 0.67 | 0.67 |\n| lung neuroendocrine cell | 2 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| bronchial smooth muscle cell | 1921 | 0.97 | 0.96 | 0.98 | 0.96 | 0.00 | 0.92 | 0.98 | 0.98 | 0.98 |\n| fibroblast of lung | 429 | 0.93 | 0.97 | 0.96 | 0.86 | 0.00 | 0.72 | 0.99 | 0.99 | 0.98 |\n| myeloid dendritic cell | 342 | 0.95 | 0.98 | 0.98 | 0.90 | 0.00 | 0.88 | 0.99 | 0.99 | 0.99 |\n| adventitial cell | 251 | 0.90 | 0.96 | 0.95 | 0.75 | 0.00 | 0.00 | 1.00 | 1.00 | 0.99 |\n| B cell | 251 | 0.97 | 0.98 | 0.98 | 0.86 | 0.00 | 0.86 | 1.00 | 0.99 | 0.99 |\n| classical monocyte | 183 | 0.93 | 0.96 | 0.94 | 0.82 | 0.00 | 0.90 | 0.98 | 0.94 | 0.97 |\n| vein endothelial cell | 138 | 0.88 | 0.87 | 0.90 | 0.48 | 0.00 | 0.40 | 0.91 | 0.91 | 0.91 |\n| non-classical monocyte | 135 | 0.95 | 0.97 | 0.96 | 0.72 | 0.00 | 0.89 | 1.00 | 1.00 | 0.99 |\n| neutrophil | 105 | 0.98 | 0.98 | 0.97 | 0.92 | 0.00 | 0.95 | 0.99 | 0.99 | 0.98 |\n| CD8-positive, alpha-beta T cell | 110 | 0.75 | 0.85 | 0.87 | 0.61 | 0.00 | 0.00 | 0.99 | 1.00 | 0.96 |\n| smooth muscle cell of the pulmonary artery | 102 | 0.84 | 0.87 | 0.89 | 0.62 | 0.00 | 0.54 | 0.81 | 0.97 | 0.92 |\n| endothelial cell of lymphatic vessel | 87 | 0.99 | 0.99 | 0.96 | 0.88 | 0.00 | 0.79 | 0.99 | 0.98 | 0.99 |\n| dendritic cell | 57 | 0.94 | 0.95 | 0.94 | 0.61 | 0.00 | 0.49 | 0.99 | 0.99 | 0.95 |\n| CD4-positive, alpha-beta T cell | 56 | 0.84 | 0.85 | 0.79 | 0.65 | 0.00 | 0.00 | 1.00 | 1.00 | 0.96 |\n| ciliated columnar cell of tracheobronchial tree | 44 | 0.98 | 0.98 | 0.98 | 0.81 | 0.00 | 0.74 | 0.97 | 0.95 | 0.93 |\n| natural killer cell | 46 | 0.96 | 0.96 | 0.94 | 0.55 | 0.00 | 0.26 | 1.00 | 1.00 | 0.97 |\n| pulmonary interstitial fibroblast | 46 | 0.91 | 0.92 | 0.91 | 0.76 | 0.00 | 0.29 | 1.00 | 1.00 | 0.95 |\n| regulatory T cell | 42 | 0.73 | 0.76 | 0.83 | 0.23 | 0.00 | 0.00 | 1.00 | 1.00 | 0.96 |\n| leukocyte | 37 | 0.00 | 0.52 | 0.51 | 0.41 | 0.00 | 0.10 | 0.93 | 0.80 | 0.72 |\n| pericyte | 31 | 0.74 | 0.84 | 0.84 | 0.79 | 0.00 | 0.00 | 0.87 | 0.89 | 0.88 |\n| respiratory basal cell | 26 | 0.96 | 0.88 | 0.82 | 0.87 | 0.00 | 0.56 | 0.90 | 0.80 | 0.87 |\n| T cell | 22 | 0.74 | 0.87 | 0.84 | 0.14 | 0.00 | 0.00 | 1.00 | 1.00 | 0.98 |\n| plasma cell | 24 | 0.96 | 0.96 | 0.88 | 0.59 | 0.00 | 0.62 | 0.98 | 0.98 | 0.96 |\n| club cell | 19 | 0.17 | 0.26 | 0.18 | 0.17 | 0.00 | 0.16 | 0.44 | 0.31 | 0.19 |\n| intermediate monocyte | 10 | 0.00 | 0.48 | 0.18 | 0.17 | 0.00 | 0.00 | 1.00 | 1.00 | 0.57 |\n| lymphocyte | 9 | 0.00 | 0.88 | 0.94 | 0.20 | 0.00 | 0.00 | 1.00 | 1.00 | 0.94 |\n| lung macrophage | 8 | 0.70 | 0.94 | 0.94 | 0.36 | 0.00 | 0.00 | 1.00 | 1.00 | 0.94 |\n| mature NK T cell | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 |\n| plasmacytoid dendritic cell | 5 | 0.00 | 0.80 | 0.80 | 0.55 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| lung neuroendocrine cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 |"
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checkpoint

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