tabula_muris_Pancreas_10x / accuracies.json
canergen's picture
popV version: 0.6.0
2ea9efc verified
{
"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| type B pancreatic cell | 259 | 0.99 | 0.99 | 0.54 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| pancreatic acinar cell | 221 | 1.00 | 1.00 | 0.74 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| pancreatic ductal cell | 29 | 1.00 | 0.98 | 1.00 | 0.98 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| pancreatic A cell | 31 | 0.81 | 0.88 | 0.61 | 0.92 | 0.00 | 0.89 | 0.95 | 0.89 | 0.92 |\n| pancreatic D cell | 26 | 1.00 | 1.00 | 1.00 | 0.98 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| leukocyte | 19 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 0.97 | 0.95 | 1.00 |\n| pancreatic PP cell | 12 | 0.64 | 0.70 | 0.59 | 0.82 | 0.00 | 0.78 | 0.96 | 0.83 | 0.87 |\n| endothelial cell | 11 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| pancreatic stellate cell | 1 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.67 | 0.00 | 0.00 | 1.00 |",
"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| type B pancreatic cell | 2415 | 0.99 | 1.00 | 0.59 | 0.99 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| pancreatic acinar cell | 1917 | 1.00 | 1.00 | 0.73 | 0.99 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| pancreatic ductal cell | 303 | 0.99 | 0.99 | 0.99 | 0.97 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| pancreatic A cell | 279 | 0.88 | 0.89 | 0.72 | 0.92 | 0.00 | 0.96 | 0.99 | 0.98 | 0.97 |\n| pancreatic D cell | 245 | 0.98 | 1.00 | 0.99 | 0.96 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |\n| leukocyte | 161 | 1.00 | 0.99 | 0.99 | 0.97 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |\n| pancreatic PP cell | 145 | 0.75 | 0.77 | 0.66 | 0.87 | 0.00 | 0.95 | 1.00 | 1.00 | 0.94 |\n| endothelial cell | 95 | 1.00 | 0.99 | 0.98 | 0.93 | 0.00 | 0.95 | 1.00 | 1.00 | 1.00 |\n| pancreatic stellate cell | 20 | 0.98 | 0.95 | 0.92 | 0.62 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |"
}