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popV
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tabula_muris_Skin_of_body_Smart-seq2

Joblib
popV
biology
genomics
single-cell
AnnData:0.12.2
scikit_learn:1.7.2
organism:Mus musculus
Python:3.12.8
popV:0.6.0
tissue: skin of body
Model card Files
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Community
canergen commited on
Commit
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1 Parent(s): 048ecf6

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Files changed (18) hide show
  1. .gitattributes +1 -0
  2. OnClass.data-00000-of-00001 +3 -0
  3. OnClass.index +0 -0
  4. OnClass.meta +0 -0
  5. OnClass.npz +3 -0
  6. accuracies.json +4 -0
  7. celltypist.pkl +3 -0
  8. checkpoint +2 -0
  9. harmony_knn_classifier.joblib +3 -0
  10. obo_dag.joblib +3 -0
  11. popv_output/predictions.csv +0 -0
  12. preprocessing.json +0 -0
  13. pynndescent_index.joblib +3 -0
  14. scanvi/model.pt +3 -0
  15. scvi/model.pt +3 -0
  16. scvi_knn_classifier.joblib +3 -0
  17. svm_classifier_cuml.joblib +3 -0
  18. xgboost_classifier.model +3 -0
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OnClass.index ADDED
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+ "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| keratinocyte stem cell | 245 | 0.97 | 0.98 | 0.99 | 0.94 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |\n| basal cell of epidermis | 173 | 0.92 | 0.94 | 0.94 | 0.79 | 0.00 | 0.90 | 0.91 | 0.93 | 0.93 |\n| epidermal cell | 58 | 0.89 | 0.92 | 0.88 | 0.42 | 0.00 | 0.85 | 0.89 | 0.91 | 0.91 |\n| T cell | 7 | 0.93 | 0.44 | 0.77 | 0.00 | 0.00 | 0.20 | 0.73 | 0.60 | 0.73 |\n| fibroblast | 3 | 1.00 | 0.50 | 1.00 | 0.00 | 0.00 | 0.67 | 0.80 | 0.50 | 1.00 |\n| macrophage | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
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