Hugging Face's logo

popV
/
tabula_muris_Thymus_10x

Joblib
popV
biology
genomics
single-cell
AnnData:0.12.2
scikit_learn:1.7.2
organism:Mus musculus
Python:3.12.8
popV:0.6.0
tissue: thymus
Model card Files
xet
 Community
canergen commited on
Commit
5583626
·
verified ·
1 Parent(s): c09b8d5

Upload folder using huggingface_hub

Browse files
Files changed (18) hide show
  1. .gitattributes +1 -0
  2. OnClass.data-00000-of-00001 +3 -0
  3. OnClass.index +0 -0
  4. OnClass.meta +0 -0
  5. OnClass.npz +3 -0
  6. accuracies.json +4 -0
  7. celltypist.pkl +3 -0
  8. checkpoint +2 -0
  9. harmony_knn_classifier.joblib +3 -0
  10. obo_dag.joblib +3 -0
  11. popv_output/predictions.csv +0 -0
  12. preprocessing.json +0 -0
  13. pynndescent_index.joblib +3 -0
  14. scanvi/model.pt +3 -0
  15. scvi/model.pt +3 -0
  16. scvi_knn_classifier.joblib +3 -0
  17. svm_classifier_cuml.joblib +3 -0
  18. xgboost_classifier.model +3 -0
.gitattributes CHANGED
@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
 
 
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
36
+ OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
OnClass.data-00000-of-00001 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:71f964bed8f73572f95d791bf20206f5939970b1811085f6af518d9532bda4e7
3
+ size 27239224
OnClass.index ADDED
Binary file (222 Bytes). View file
 
OnClass.meta ADDED
Binary file (69.1 kB). View file
 
OnClass.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8d099f428f24eece196748b6d210813bf55d1cc7dd359ca16d6414c8cbaed729
3
+ size 144124476
accuracies.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| professional antigen presenting cell | 259 | 0.99 | 1.00 | 0.99 | 0.99 | 0.00 | 1.00 | 1.00 | 0.99 | 1.00 |\n| DN4 thymocyte | 196 | 0.93 | 0.96 | 0.96 | 0.92 | 0.00 | 0.93 | 0.96 | 0.95 | 0.96 |\n| thymocyte | 201 | 0.99 | 1.00 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |\n| immature T cell | 161 | 0.94 | 0.98 | 0.97 | 0.96 | 0.00 | 0.94 | 0.96 | 0.94 | 0.97 |\n| double negative thymocyte | 98 | 0.83 | 0.92 | 0.88 | 0.81 | 0.00 | 0.84 | 0.90 | 0.90 | 0.90 |\n| DN3 thymocyte | 13 | 0.96 | 1.00 | 1.00 | 0.83 | 0.00 | 0.93 | 0.96 | 0.96 | 1.00 |",
3
+ "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| professional antigen presenting cell | 2223 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| DN4 thymocyte | 1804 | 0.94 | 0.96 | 0.98 | 0.94 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |\n| thymocyte | 1691 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| immature T cell | 1623 | 0.96 | 0.97 | 0.98 | 0.96 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |\n| double negative thymocyte | 873 | 0.85 | 0.92 | 0.94 | 0.85 | 0.00 | 0.88 | 0.93 | 0.93 | 0.95 |\n| DN3 thymocyte | 133 | 0.91 | 0.96 | 0.97 | 0.87 | 0.00 | 0.93 | 1.00 | 0.97 | 0.98 |"
4
+ }
celltypist.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f6c4f47c6a0f50e63f0d28694c19b12ef525f8405f750f266da4174e5f14e564
3
+ size 277346
checkpoint ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ model_checkpoint_path: "OnClass"
2
+ all_model_checkpoint_paths: "OnClass"
harmony_knn_classifier.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7ce81eb30cdab214e2d9fdda0482d1c8cfb807556608c1051938b22eaf8ef3d1
3
+ size 6463845
obo_dag.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:88b6c19fc939f3c304978a10ef8b7cc6ba69d2d4a0a0613df8312b4ee3a26313
3
+ size 321386
popv_output/predictions.csv ADDED
The diff for this file is too large to render. See raw diff
 
preprocessing.json ADDED
The diff for this file is too large to render. See raw diff
 
pynndescent_index.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5515ddadc9ba6d6b104a630565ba028b1085b2f4410a4df43fd9eb8a2500b0fa
3
+ size 6863147
scanvi/model.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3efc06262875a1357dbf180677487638c0ef5b9750c2c97a3bb42387db234cce
3
+ size 11381100
scvi/model.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6b42a0c5784a357057e72a3f2b788256287329184166ad2c3aa1a4d6e28f680e
3
+ size 10875709
scvi_knn_classifier.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a89c861c50a72010da31d1bc0548b9f22f96d9741886bc12a403f106ce53d86c
3
+ size 3528869
svm_classifier_cuml.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1c5ce59e514f1029c3620a3398b80471a2b58499d4b56338c68b0f1421ee8373
3
+ size 103835
xgboost_classifier.model ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a82c8e34525270b978ab49788be347c0ceab0b799e3cb10da83dbe3c162bcfb9
3
+ size 1648966