Upload folder using huggingface_hub

OnClass.data-00000-of-00001

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:e7e42bbec5def0213f360670d22bf84c86f49151e4e95360aeb69a3eb674778c
+oid sha256:e289292cfab6319d19bc2eae62664fa33039a67ed5ffcd51ed104b7f51c83ac8
 size 27239224

OnClass.npz

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:0dea42378f48c6bbba755276dd4e951031b305f795ae2d22ea71515a862988e2
-size 144112243
+oid sha256:2a84ea5c2491a34f3a7dbe306ca66ebba3b47d3f648a6af7d944b8a1c34482d1
+size 144112238

accuracies.json

@@ -1,4 +1,4 @@
 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 888 | 0.97 | 0.96 | 0.97 | 0.95 | 0.00 | 0.85 | 0.95 | 0.95 | 0.98 |\n| CD4-positive, alpha-beta T cell | 298 | 0.83 | 0.87 | 0.84 | 0.83 | 0.00 | 0.84 | 0.86 | 0.89 | 0.87 |\n| CD8-positive, alpha-beta T cell | 245 | 0.80 | 0.86 | 0.83 | 0.79 | 0.00 | 0.82 | 0.82 | 0.87 | 0.85 |\n| monocyte | 237 | 0.78 | 0.81 | 0.82 | 0.79 | 0.00 | 0.75 | 0.66 | 0.79 | 0.82 |\n| B cell | 191 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| hematopoietic precursor cell | 170 | 0.80 | 0.82 | 0.84 | 0.82 | 0.00 | 0.75 | 0.82 | 0.84 | 0.86 |\n| plasma cell | 135 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| natural killer cell | 100 | 0.94 | 0.95 | 0.97 | 0.92 | 0.00 | 0.94 | 0.92 | 0.95 | 0.96 |\n| erythroid progenitor cell | 100 | 0.70 | 0.73 | 0.70 | 0.68 | 0.00 | 0.72 | 0.80 | 0.84 | 0.81 |\n| hematopoietic stem cell | 79 | 0.76 | 0.82 | 0.83 | 0.77 | 0.00 | 0.84 | 0.77 | 0.85 | 0.86 |\n| granulocyte | 61 | 0.68 | 0.33 | 0.64 | 0.38 | 0.00 | 0.28 | 0.63 | 0.64 | 0.75 |\n| erythrocyte | 46 | 0.51 | 0.58 | 0.63 | 0.51 | 0.00 | 0.64 | 0.79 | 0.77 | 0.66 |\n| common myeloid progenitor | 51 | 0.71 | 0.75 | 0.63 | 0.67 | 0.00 | 0.73 | 0.76 | 0.81 | 0.84 |\n| macrophage | 37 | 0.61 | 0.52 | 0.74 | 0.39 | 0.00 | 0.70 | 0.67 | 0.72 | 0.77 |\n| classical monocyte | 21 | 0.00 | 0.09 | 0.21 | 0.10 | 0.00 | 0.22 | 0.11 | 0.25 | 0.07 |\n| intermediate monocyte | 19 | 0.47 | 0.49 | 0.42 | 0.27 | 0.00 | 0.30 | 0.38 | 0.51 | 0.53 |\n| myeloid dendritic cell | 6 | 0.48 | 0.22 | 0.55 | 0.62 | 0.00 | 0.31 | 0.40 | 0.45 | 0.60 |\n| T cell | 12 | 0.72 | 0.50 | 0.60 | 0.40 | 0.00 | 0.42 | 0.69 | 0.63 | 0.74 |\n| mature NK T cell | 6 | 0.00 | 0.29 | 0.50 | 0.00 | 0.00 | 0.36 | 0.29 | 0.22 | 0.29 |\n| non-classical monocyte | 6 | 0.00 | 0.50 | 0.00 | 0.25 | 0.00 | 0.60 | 0.25 | 0.33 | 0.50 |\n| basophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 |\n| fibroblast | 1 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.67 | 0.00 | 0.00 | 1.00 |\n| plasmacytoid dendritic cell | 2 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 | 0.67 | 0.00 | 1.00 | 0.67 |\n| endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 7789 | 0.97 | 0.96 | 0.98 | 0.97 | 0.00 | 0.93 | 0.96 | 0.96 | 0.98 |\n| CD4-positive, alpha-beta T cell | 2875 | 0.85 | 0.86 | 0.90 | 0.88 | 0.00 | 0.87 | 0.89 | 0.91 | 0.90 |\n| CD8-positive, alpha-beta T cell | 2391 | 0.83 | 0.84 | 0.89 | 0.84 | 0.00 | 0.83 | 0.86 | 0.89 | 0.88 |\n| monocyte | 1803 | 0.77 | 0.80 | 0.86 | 0.85 | 0.00 | 0.79 | 0.82 | 0.88 | 0.89 |\n| B cell | 1628 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| hematopoietic precursor cell | 1550 | 0.83 | 0.86 | 0.92 | 0.91 | 0.00 | 0.81 | 0.87 | 0.91 | 0.93 |\n| plasma cell | 1313 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| natural killer cell | 999 | 0.93 | 0.94 | 0.95 | 0.91 | 0.00 | 0.95 | 0.96 | 0.96 | 0.98 |\n| erythroid progenitor cell | 871 | 0.72 | 0.75 | 0.84 | 0.83 | 0.00 | 0.88 | 0.92 | 0.95 | 0.94 |\n| hematopoietic stem cell | 713 | 0.78 | 0.83 | 0.89 | 0.89 | 0.00 | 0.89 | 0.94 | 0.95 | 0.94 |\n| granulocyte | 574 | 0.70 | 0.25 | 0.78 | 0.63 | 0.00 | 0.54 | 0.70 | 0.70 | 0.85 |\n| erythrocyte | 407 | 0.64 | 0.66 | 0.82 | 0.77 | 0.00 | 0.88 | 0.96 | 0.96 | 0.93 |\n| common myeloid progenitor | 402 | 0.62 | 0.66 | 0.78 | 0.80 | 0.00 | 0.83 | 0.90 | 0.94 | 0.92 |\n| macrophage | 321 | 0.59 | 0.52 | 0.75 | 0.70 | 0.00 | 0.81 | 0.91 | 0.94 | 0.93 |\n| classical monocyte | 210 | 0.00 | 0.00 | 0.40 | 0.42 | 0.00 | 0.55 | 0.71 | 0.79 | 0.71 |\n| intermediate monocyte | 205 | 0.42 | 0.44 | 0.65 | 0.62 | 0.00 | 0.72 | 0.88 | 0.94 | 0.84 |\n| myeloid dendritic cell | 102 | 0.62 | 0.51 | 0.74 | 0.73 | 0.00 | 0.58 | 0.79 | 0.86 | 0.86 |\n| T cell | 86 | 0.51 | 0.25 | 0.49 | 0.50 | 0.00 | 0.44 | 0.70 | 0.71 | 0.74 |\n| mature NK T cell | 58 | 0.00 | 0.44 | 0.47 | 0.15 | 0.00 | 0.73 | 0.95 | 0.96 | 0.94 |\n| non-classical monocyte | 47 | 0.00 | 0.27 | 0.42 | 0.46 | 0.00 | 0.89 | 0.97 | 0.95 | 0.91 |\n| basophil | 23 | 0.00 | 0.00 | 0.63 | 0.64 | 0.00 | 0.44 | 0.82 | 0.75 | 0.79 |\n| regulatory T cell | 13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.43 | 0.87 | 0.76 | 0.14 |\n| fibroblast | 10 | 0.00 | 0.39 | 0.58 | 0.33 | 0.00 | 0.56 | 1.00 | 0.95 | 0.86 |\n| plasmacytoid dendritic cell | 7 | 0.00 | 0.00 | 0.67 | 0.31 | 0.00 | 0.36 | 0.82 | 0.78 | 0.78 |\n| endothelial cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 0.50 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 882 | 0.97 | 0.97 | 0.97 | 0.96 | 0.00 | 0.93 | 0.95 | 0.95 | 0.98 |\n| CD4-positive, alpha-beta T cell | 298 | 0.84 | 0.84 | 0.84 | 0.83 | 0.00 | 0.81 | 0.86 | 0.90 | 0.88 |\n| CD8-positive, alpha-beta T cell | 257 | 0.82 | 0.82 | 0.82 | 0.80 | 0.00 | 0.80 | 0.85 | 0.87 | 0.86 |\n| monocyte | 234 | 0.77 | 0.79 | 0.81 | 0.79 | 0.00 | 0.64 | 0.71 | 0.79 | 0.82 |\n| B cell | 191 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| hematopoietic precursor cell | 165 | 0.76 | 0.82 | 0.85 | 0.80 | 0.00 | 0.78 | 0.83 | 0.86 | 0.86 |\n| plasma cell | 143 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 1.00 | 0.99 |\n| natural killer cell | 107 | 0.92 | 0.94 | 0.96 | 0.90 | 0.00 | 0.89 | 0.96 | 0.96 | 0.96 |\n| erythroid progenitor cell | 93 | 0.74 | 0.74 | 0.68 | 0.69 | 0.00 | 0.74 | 0.83 | 0.84 | 0.80 |\n| hematopoietic stem cell | 79 | 0.73 | 0.81 | 0.82 | 0.79 | 0.00 | 0.76 | 0.82 | 0.89 | 0.85 |\n| granulocyte | 62 | 0.67 | 0.33 | 0.63 | 0.35 | 0.00 | 0.47 | 0.68 | 0.60 | 0.77 |\n| erythrocyte | 45 | 0.58 | 0.61 | 0.67 | 0.58 | 0.00 | 0.68 | 0.85 | 0.78 | 0.76 |\n| common myeloid progenitor | 48 | 0.65 | 0.75 | 0.64 | 0.62 | 0.00 | 0.73 | 0.75 | 0.84 | 0.77 |\n| macrophage | 33 | 0.67 | 0.48 | 0.73 | 0.55 | 0.00 | 0.54 | 0.61 | 0.72 | 0.72 |\n| classical monocyte | 18 | 0.00 | 0.00 | 0.12 | 0.06 | 0.00 | 0.22 | 0.21 | 0.38 | 0.15 |\n| intermediate monocyte | 21 | 0.47 | 0.39 | 0.41 | 0.29 | 0.00 | 0.29 | 0.36 | 0.36 | 0.48 |\n| myeloid dendritic cell | 6 | 0.40 | 0.20 | 0.40 | 0.53 | 0.00 | 0.33 | 0.33 | 0.71 | 0.62 |\n| T cell | 13 | 0.55 | 0.27 | 0.48 | 0.20 | 0.00 | 0.39 | 0.76 | 0.73 | 0.80 |\n| mature NK T cell | 8 | 0.00 | 0.40 | 0.40 | 0.20 | 0.00 | 0.33 | 0.36 | 0.40 | 0.40 |\n| non-classical monocyte | 7 | 0.00 | 0.44 | 0.00 | 0.25 | 0.00 | 0.31 | 0.20 | 0.46 | 0.25 |\n| basophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| regulatory T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| fibroblast | 1 | 0.00 | 1.00 | 1.00 | 0.50 | 0.00 | 0.50 | 0.00 | 0.00 | 1.00 |\n| plasmacytoid dendritic cell | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.40 | 0.00 | 1.00 | 1.00 |\n| endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 7795 | 0.97 | 0.96 | 0.98 | 0.97 | 0.00 | 0.96 | 0.96 | 0.95 | 0.98 |\n| CD4-positive, alpha-beta T cell | 2875 | 0.86 | 0.86 | 0.90 | 0.87 | 0.00 | 0.84 | 0.90 | 0.92 | 0.90 |\n| CD8-positive, alpha-beta T cell | 2379 | 0.83 | 0.84 | 0.88 | 0.83 | 0.00 | 0.83 | 0.87 | 0.89 | 0.88 |\n| monocyte | 1806 | 0.77 | 0.80 | 0.87 | 0.85 | 0.00 | 0.73 | 0.82 | 0.86 | 0.90 |\n| B cell | 1628 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| hematopoietic precursor cell | 1555 | 0.80 | 0.85 | 0.92 | 0.89 | 0.00 | 0.86 | 0.90 | 0.91 | 0.93 |\n| plasma cell | 1305 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| natural killer cell | 992 | 0.93 | 0.94 | 0.96 | 0.90 | 0.00 | 0.93 | 0.96 | 0.96 | 0.97 |\n| erythroid progenitor cell | 878 | 0.71 | 0.74 | 0.83 | 0.84 | 0.00 | 0.88 | 0.93 | 0.95 | 0.94 |\n| hematopoietic stem cell | 713 | 0.75 | 0.83 | 0.89 | 0.87 | 0.00 | 0.83 | 0.94 | 0.96 | 0.93 |\n| granulocyte | 573 | 0.72 | 0.25 | 0.76 | 0.60 | 0.00 | 0.67 | 0.70 | 0.70 | 0.84 |\n| erythrocyte | 408 | 0.62 | 0.66 | 0.80 | 0.81 | 0.00 | 0.89 | 0.95 | 0.95 | 0.94 |\n| common myeloid progenitor | 405 | 0.64 | 0.66 | 0.76 | 0.78 | 0.00 | 0.78 | 0.92 | 0.95 | 0.91 |\n| macrophage | 325 | 0.58 | 0.54 | 0.75 | 0.73 | 0.00 | 0.83 | 0.91 | 0.92 | 0.93 |\n| classical monocyte | 213 | 0.00 | 0.01 | 0.41 | 0.39 | 0.00 | 0.46 | 0.76 | 0.80 | 0.75 |\n| intermediate monocyte | 203 | 0.41 | 0.48 | 0.69 | 0.60 | 0.00 | 0.71 | 0.89 | 0.92 | 0.85 |\n| myeloid dendritic cell | 102 | 0.57 | 0.50 | 0.70 | 0.72 | 0.00 | 0.74 | 0.75 | 0.81 | 0.82 |\n| T cell | 85 | 0.43 | 0.10 | 0.39 | 0.38 | 0.00 | 0.45 | 0.72 | 0.72 | 0.75 |\n| mature NK T cell | 56 | 0.00 | 0.39 | 0.51 | 0.15 | 0.00 | 0.53 | 0.94 | 0.90 | 0.95 |\n| non-classical monocyte | 46 | 0.00 | 0.18 | 0.54 | 0.38 | 0.00 | 0.80 | 0.98 | 0.95 | 0.85 |\n| basophil | 23 | 0.00 | 0.08 | 0.54 | 0.61 | 0.00 | 0.41 | 0.85 | 0.77 | 0.78 |\n| regulatory T cell | 14 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.37 | 0.88 | 0.82 | 0.12 |\n| fibroblast | 10 | 0.00 | 0.48 | 0.67 | 0.40 | 0.00 | 0.32 | 0.87 | 0.87 | 0.82 |\n| plasmacytoid dendritic cell | 8 | 0.00 | 0.52 | 0.53 | 0.47 | 0.00 | 0.29 | 0.80 | 0.73 | 0.70 |\n| endothelial cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 0.50 |"
 }

celltypist.pkl

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:cde7fa07aaf99a5cb929e0a27aea933a50c0b52629c4621f347fda6487d38610
+oid sha256:b55adb7239489405ea8c2bab797b6c83f2a8f828ae067a1ea73ae23e330d8870
 size 569800

harmony_knn_classifier.joblib

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:aa81d6a3c4bca72626fad32e978281ca88e171e5d98d899adb165ff7980c5179
-size 18612725
+oid sha256:ad695fa73e14c8df31f571bd5282804c7ad14121c5d37fb4dc229f0b93267aa1
+size 18709394

preprocessing.json

@@ -39,6 +39,7 @@
         "ENSG00000007174",
         "ENSG00000007350",
         "ENSG00000007516",
+        "ENSG00000007545",
         "ENSG00000007968",
         "ENSG00000008226",
         "ENSG00000008256",
@@ -49,7 +50,6 @@
         "ENSG00000008441",
         "ENSG00000008513",
         "ENSG00000008710",
-        "ENSG00000008838",
         "ENSG00000009830",
         "ENSG00000010072",
         "ENSG00000010278",
@@ -207,7 +207,6 @@
         "ENSG00000069482",
         "ENSG00000069667",
         "ENSG00000069966",
-        "ENSG00000069998",
         "ENSG00000070018",
         "ENSG00000070047",
         "ENSG00000070087",
@@ -242,11 +241,13 @@
         "ENSG00000073150",
         "ENSG00000073282",
         "ENSG00000073350",
+        "ENSG00000073417",
         "ENSG00000073464",
         "ENSG00000073712",
         "ENSG00000073737",
         "ENSG00000073792",
         "ENSG00000074621",
+        "ENSG00000074657",
         "ENSG00000074800",
         "ENSG00000074842",
         "ENSG00000074855",
@@ -280,7 +281,6 @@
         "ENSG00000078589",
         "ENSG00000079257",
         "ENSG00000079308",
-        "ENSG00000079337",
         "ENSG00000079385",
         "ENSG00000079435",
         "ENSG00000079482",
@@ -336,7 +336,6 @@
         "ENSG00000087245",
         "ENSG00000087253",
         "ENSG00000087258",
-        "ENSG00000087303",
         "ENSG00000087448",
         "ENSG00000087586",
         "ENSG00000087589",
@@ -371,6 +370,7 @@
         "ENSG00000090924",
         "ENSG00000090971",
         "ENSG00000090989",
+        "ENSG00000091129",
         "ENSG00000091136",
         "ENSG00000091181",
         "ENSG00000091317",
@@ -451,7 +451,6 @@
         "ENSG00000100721",
         "ENSG00000100722",
         "ENSG00000100744",
-        "ENSG00000100784",
         "ENSG00000100802",
         "ENSG00000100814",
         "ENSG00000100889",
@@ -467,6 +466,7 @@
         "ENSG00000101150",
         "ENSG00000101162",
         "ENSG00000101190",
+        "ENSG00000101191",
         "ENSG00000101213",
         "ENSG00000101224",
         "ENSG00000101246",
@@ -488,7 +488,6 @@
         "ENSG00000101844",
         "ENSG00000101856",
         "ENSG00000101871",
-        "ENSG00000101935",
         "ENSG00000101986",
         "ENSG00000102001",
         "ENSG00000102003",
@@ -564,13 +563,13 @@
         "ENSG00000105255",
         "ENSG00000105270",
         "ENSG00000105289",
-        "ENSG00000105355",
         "ENSG00000105357",
         "ENSG00000105372",
         "ENSG00000105427",
         "ENSG00000105443",
         "ENSG00000105447",
         "ENSG00000105464",
+        "ENSG00000105492",
         "ENSG00000105499",
         "ENSG00000105568",
         "ENSG00000105610",
@@ -594,7 +593,6 @@
         "ENSG00000105982",
         "ENSG00000106004",
         "ENSG00000106013",
-        "ENSG00000106080",
         "ENSG00000106086",
         "ENSG00000106089",
         "ENSG00000106258",
@@ -692,7 +690,6 @@
         "ENSG00000110218",
         "ENSG00000110324",
         "ENSG00000110436",
-        "ENSG00000110448",
         "ENSG00000110514",
         "ENSG00000110693",
         "ENSG00000110697",
@@ -706,7 +703,6 @@
         "ENSG00000110851",
         "ENSG00000110876",
         "ENSG00000110888",
-        "ENSG00000110906",
         "ENSG00000110955",
         "ENSG00000111087",
         "ENSG00000111144",
@@ -762,7 +758,6 @@
         "ENSG00000112530",
         "ENSG00000112599",
         "ENSG00000112697",
-        "ENSG00000112763",
         "ENSG00000112769",
         "ENSG00000112782",
         "ENSG00000112796",
@@ -778,7 +773,6 @@
         "ENSG00000113269",
         "ENSG00000113319",
         "ENSG00000113328",
-        "ENSG00000113360",
         "ENSG00000113361",
         "ENSG00000113389",
         "ENSG00000113552",
@@ -851,8 +845,8 @@
         "ENSG00000116299",
         "ENSG00000116396",
         "ENSG00000116525",
+        "ENSG00000116544",
         "ENSG00000116678",
-        "ENSG00000116690",
         "ENSG00000116704",
         "ENSG00000116717",
         "ENSG00000116741",
@@ -947,7 +941,6 @@
         "ENSG00000119965",
         "ENSG00000120049",
         "ENSG00000120129",
-        "ENSG00000120217",
         "ENSG00000120262",
         "ENSG00000120280",
         "ENSG00000120370",
@@ -1066,7 +1059,6 @@
         "ENSG00000125734",
         "ENSG00000125735",
         "ENSG00000125740",
-        "ENSG00000125834",
         "ENSG00000125845",
         "ENSG00000125869",
         "ENSG00000125945",
@@ -1147,6 +1139,7 @@
         "ENSG00000129467",
         "ENSG00000129472",
         "ENSG00000129480",
+        "ENSG00000129521",
         "ENSG00000129535",
         "ENSG00000129538",
         "ENSG00000129696",
@@ -1243,6 +1236,7 @@
         "ENSG00000132704",
         "ENSG00000132744",
         "ENSG00000132768",
+        "ENSG00000132792",
         "ENSG00000132801",
         "ENSG00000132825",
         "ENSG00000132849",
@@ -1324,6 +1318,7 @@
         "ENSG00000135108",
         "ENSG00000135114",
         "ENSG00000135119",
+        "ENSG00000135127",
         "ENSG00000135205",
         "ENSG00000135218",
         "ENSG00000135245",
@@ -1402,7 +1397,6 @@
         "ENSG00000136935",
         "ENSG00000136960",
         "ENSG00000136997",
-        "ENSG00000137040",
         "ENSG00000137054",
         "ENSG00000137075",
         "ENSG00000137101",
@@ -1422,7 +1416,6 @@
         "ENSG00000137491",
         "ENSG00000137496",
         "ENSG00000137574",
-        "ENSG00000137672",
         "ENSG00000137673",
         "ENSG00000137713",
         "ENSG00000137752",
@@ -1447,6 +1440,7 @@
         "ENSG00000138138",
         "ENSG00000138172",
         "ENSG00000138193",
+        "ENSG00000138231",
         "ENSG00000138271",
         "ENSG00000138316",
         "ENSG00000138363",
@@ -1515,7 +1509,6 @@
         "ENSG00000140451",
         "ENSG00000140463",
         "ENSG00000140471",
-        "ENSG00000140474",
         "ENSG00000140479",
         "ENSG00000140511",
         "ENSG00000140527",
@@ -1609,7 +1602,6 @@
         "ENSG00000143630",
         "ENSG00000143740",
         "ENSG00000143751",
-        "ENSG00000143776",
         "ENSG00000143842",
         "ENSG00000143850",
         "ENSG00000143858",
@@ -1617,6 +1609,7 @@
         "ENSG00000143971",
         "ENSG00000143994",
         "ENSG00000143995",
+        "ENSG00000144026",
         "ENSG00000144043",
         "ENSG00000144057",
         "ENSG00000144061",
@@ -1702,6 +1695,7 @@
         "ENSG00000147138",
         "ENSG00000147144",
         "ENSG00000147145",
+        "ENSG00000147164",
         "ENSG00000147174",
         "ENSG00000147231",
         "ENSG00000147324",
@@ -1714,7 +1708,6 @@
         "ENSG00000147570",
         "ENSG00000147573",
         "ENSG00000147604",
-        "ENSG00000147650",
         "ENSG00000147687",
         "ENSG00000147789",
         "ENSG00000147862",
@@ -1758,6 +1751,7 @@
         "ENSG00000149782",
         "ENSG00000149792",
         "ENSG00000149922",
+        "ENSG00000149970",
         "ENSG00000150045",
         "ENSG00000150275",
         "ENSG00000150281",
@@ -1801,6 +1795,7 @@
         "ENSG00000152284",
         "ENSG00000152377",
         "ENSG00000152382",
+        "ENSG00000152402",
         "ENSG00000152413",
         "ENSG00000152433",
         "ENSG00000152454",
@@ -1871,7 +1866,6 @@
         "ENSG00000154783",
         "ENSG00000154803",
         "ENSG00000154839",
-        "ENSG00000154856",
         "ENSG00000154864",
         "ENSG00000154914",
         "ENSG00000154928",
@@ -1938,8 +1932,6 @@
         "ENSG00000157578",
         "ENSG00000157601",
         "ENSG00000157625",
-        "ENSG00000157654",
-        "ENSG00000157657",
         "ENSG00000157693",
         "ENSG00000157703",
         "ENSG00000157796",
@@ -2007,6 +1999,7 @@
         "ENSG00000160188",
         "ENSG00000160191",
         "ENSG00000160219",
+        "ENSG00000160255",
         "ENSG00000160305",
         "ENSG00000160307",
         "ENSG00000160321",
@@ -2026,7 +2019,6 @@
         "ENSG00000160803",
         "ENSG00000160856",
         "ENSG00000160883",
-        "ENSG00000160972",
         "ENSG00000160993",
         "ENSG00000161011",
         "ENSG00000161016",
@@ -2111,6 +2103,7 @@
         "ENSG00000163291",
         "ENSG00000163354",
         "ENSG00000163378",
+        "ENSG00000163380",
         "ENSG00000163421",
         "ENSG00000163430",
         "ENSG00000163449",
@@ -2165,6 +2158,7 @@
         "ENSG00000164068",
         "ENSG00000164070",
         "ENSG00000164077",
+        "ENSG00000164086",
         "ENSG00000164100",
         "ENSG00000164104",
         "ENSG00000164114",
@@ -2207,7 +2201,6 @@
         "ENSG00000164587",
         "ENSG00000164591",
         "ENSG00000164611",
-        "ENSG00000164626",
         "ENSG00000164627",
         "ENSG00000164631",
         "ENSG00000164659",
@@ -2337,12 +2330,12 @@
         "ENSG00000167074",
         "ENSG00000167094",
         "ENSG00000167103",
+        "ENSG00000167105",
         "ENSG00000167106",
         "ENSG00000167107",
         "ENSG00000167216",
         "ENSG00000167232",
         "ENSG00000167264",
-        "ENSG00000167281",
         "ENSG00000167291",
         "ENSG00000167306",
         "ENSG00000167333",
@@ -2426,6 +2419,7 @@
         "ENSG00000168959",
         "ENSG00000168994",
         "ENSG00000168995",
+        "ENSG00000169031",
         "ENSG00000169045",
         "ENSG00000169071",
         "ENSG00000169105",
@@ -2500,7 +2494,6 @@
         "ENSG00000170899",
         "ENSG00000170903",
         "ENSG00000170915",
-        "ENSG00000170954",
         "ENSG00000170955",
         "ENSG00000170959",
         "ENSG00000170962",
@@ -2557,7 +2550,6 @@
         "ENSG00000172361",
         "ENSG00000172375",
         "ENSG00000172409",
-        "ENSG00000172456",
         "ENSG00000172476",
         "ENSG00000172575",
         "ENSG00000172594",
@@ -2594,6 +2586,7 @@
         "ENSG00000173531",
         "ENSG00000173545",
         "ENSG00000173548",
+        "ENSG00000173567",
         "ENSG00000173599",
         "ENSG00000173614",
         "ENSG00000173681",
@@ -2753,7 +2746,6 @@
         "ENSG00000178814",
         "ENSG00000178860",
         "ENSG00000178999",
-        "ENSG00000179041",
         "ENSG00000179057",
         "ENSG00000179083",
         "ENSG00000179088",
@@ -2777,6 +2769,7 @@
         "ENSG00000179841",
         "ENSG00000179859",
         "ENSG00000179909",
+        "ENSG00000179918",
         "ENSG00000179941",
         "ENSG00000180035",
         "ENSG00000180044",
@@ -2840,7 +2833,6 @@
         "ENSG00000182141",
         "ENSG00000182149",
         "ENSG00000182173",
-        "ENSG00000182175",
         "ENSG00000182179",
         "ENSG00000182263",
         "ENSG00000182318",
@@ -2851,6 +2843,7 @@
         "ENSG00000182534",
         "ENSG00000182544",
         "ENSG00000182578",
+        "ENSG00000182600",
         "ENSG00000182636",
         "ENSG00000182685",
         "ENSG00000182700",
@@ -2891,6 +2884,7 @@
         "ENSG00000184194",
         "ENSG00000184205",
         "ENSG00000184226",
+        "ENSG00000184261",
         "ENSG00000184271",
         "ENSG00000184281",
         "ENSG00000184307",
@@ -2907,7 +2901,6 @@
         "ENSG00000184675",
         "ENSG00000184678",
         "ENSG00000184786",
-        "ENSG00000184792",
         "ENSG00000184860",
         "ENSG00000184867",
         "ENSG00000184939",
@@ -2929,7 +2922,6 @@
         "ENSG00000185250",
         "ENSG00000185272",
         "ENSG00000185274",
-        "ENSG00000185278",
         "ENSG00000185324",
         "ENSG00000185339",
         "ENSG00000185347",
@@ -2979,6 +2971,7 @@
         "ENSG00000186567",
         "ENSG00000186594",
         "ENSG00000186628",
+        "ENSG00000186638",
         "ENSG00000186687",
         "ENSG00000186792",
         "ENSG00000186810",
@@ -2994,6 +2987,7 @@
         "ENSG00000187068",
         "ENSG00000187079",
         "ENSG00000187091",
+        "ENSG00000187105",
         "ENSG00000187122",
         "ENSG00000187164",
         "ENSG00000187187",
@@ -3106,8 +3100,10 @@
         "ENSG00000196290",
         "ENSG00000196296",
         "ENSG00000196357",
+        "ENSG00000196368",
         "ENSG00000196376",
         "ENSG00000196378",
+        "ENSG00000196391",
         "ENSG00000196415",
         "ENSG00000196422",
         "ENSG00000196428",
@@ -3117,6 +3113,7 @@
         "ENSG00000196458",
         "ENSG00000196460",
         "ENSG00000196466",
+        "ENSG00000196502",
         "ENSG00000196503",
         "ENSG00000196517",
         "ENSG00000196550",
@@ -3169,7 +3166,6 @@
         "ENSG00000197385",
         "ENSG00000197446",
         "ENSG00000197465",
-        "ENSG00000197467",
         "ENSG00000197483",
         "ENSG00000197497",
         "ENSG00000197520",
@@ -3180,6 +3176,7 @@
         "ENSG00000197580",
         "ENSG00000197594",
         "ENSG00000197599",
+        "ENSG00000197608",
         "ENSG00000197619",
         "ENSG00000197629",
         "ENSG00000197635",
@@ -3189,6 +3186,7 @@
         "ENSG00000197714",
         "ENSG00000197748",
         "ENSG00000197779",
+        "ENSG00000197798",
         "ENSG00000197816",
         "ENSG00000197837",
         "ENSG00000197841",
@@ -3197,7 +3195,6 @@
         "ENSG00000197879",
         "ENSG00000197888",
         "ENSG00000197892",
-        "ENSG00000197905",
         "ENSG00000197933",
         "ENSG00000197937",
         "ENSG00000197948",
@@ -3302,7 +3299,6 @@
         "ENSG00000204277",
         "ENSG00000204287",
         "ENSG00000204301",
-        "ENSG00000204305",
         "ENSG00000204323",
         "ENSG00000204385",
         "ENSG00000204389",
@@ -3346,6 +3342,7 @@
         "ENSG00000205853",
         "ENSG00000205913",
         "ENSG00000205978",
+        "ENSG00000206140",
         "ENSG00000206172",
         "ENSG00000206177",
         "ENSG00000206190",
@@ -3388,6 +3385,7 @@
         "ENSG00000213937",
         "ENSG00000213949",
         "ENSG00000213988",
+        "ENSG00000213999",
         "ENSG00000214193",
         "ENSG00000214226",
         "ENSG00000214357",
@@ -3462,7 +3460,6 @@
         "ENSG00000225611",
         "ENSG00000225697",
         "ENSG00000225746",
-        "ENSG00000225762",
         "ENSG00000225793",
         "ENSG00000225828",
         "ENSG00000225937",
@@ -3477,6 +3474,7 @@
         "ENSG00000226476",
         "ENSG00000226479",
         "ENSG00000226581",
+        "ENSG00000226659",
         "ENSG00000226674",
         "ENSG00000226711",
         "ENSG00000226746",
@@ -3550,6 +3548,7 @@
         "ENSG00000231507",
         "ENSG00000231680",
         "ENSG00000231689",
+        "ENSG00000232065",
         "ENSG00000232098",
         "ENSG00000232310",
         "ENSG00000232354",
@@ -3597,10 +3596,8 @@
         "ENSG00000234948",
         "ENSG00000234997",
         "ENSG00000235016",
-        "ENSG00000235034",
         "ENSG00000235092",
         "ENSG00000235106",
-        "ENSG00000235109",
         "ENSG00000235159",
         "ENSG00000235172",
         "ENSG00000235191",
@@ -3659,7 +3656,6 @@
         "ENSG00000240005",
         "ENSG00000240053",
         "ENSG00000240057",
-        "ENSG00000240204",
         "ENSG00000240211",
         "ENSG00000240254",
         "ENSG00000240373",
@@ -3692,6 +3688,7 @@
         "ENSG00000244405",
         "ENSG00000244479",
         "ENSG00000244734",
+        "ENSG00000245067",
         "ENSG00000245105",
         "ENSG00000245146",
         "ENSG00000245149",
@@ -3722,6 +3719,7 @@
         "ENSG00000246859",
         "ENSG00000246898",
         "ENSG00000246922",
+        "ENSG00000247287",
         "ENSG00000247317",
         "ENSG00000247363",
         "ENSG00000247595",
@@ -3741,6 +3739,7 @@
         "ENSG00000248673",
         "ENSG00000248714",
         "ENSG00000248874",
+        "ENSG00000248898",
         "ENSG00000249087",
         "ENSG00000249375",
         "ENSG00000249407",
@@ -3763,7 +3762,6 @@
         "ENSG00000250616",
         "ENSG00000250802",
         "ENSG00000250910",
-        "ENSG00000251141",
         "ENSG00000251192",
         "ENSG00000251221",
         "ENSG00000251247",
@@ -3818,6 +3816,7 @@
         "ENSG00000257155",
         "ENSG00000257354",
         "ENSG00000257497",
+        "ENSG00000257596",
         "ENSG00000257913",
         "ENSG00000257924",
         "ENSG00000258001",
@@ -3886,6 +3885,7 @@
         "ENSG00000262655",
         "ENSG00000262728",
         "ENSG00000263069",
+        "ENSG00000263293",
         "ENSG00000263327",
         "ENSG00000263400",
         "ENSG00000263874",
@@ -3911,6 +3911,7 @@
         "ENSG00000267470",
         "ENSG00000267475",
         "ENSG00000267534",
+        "ENSG00000267549",
         "ENSG00000267659",
         "ENSG00000267680",
         "ENSG00000267871",
@@ -3936,7 +3937,6 @@
         "ENSG00000270084",
         "ENSG00000270164",
         "ENSG00000270362",
-        "ENSG00000270419",
         "ENSG00000270641",
         "ENSG00000270673",
         "ENSG00000270959",

pynndescent_index.joblib

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:45cb710b197fd5bd40aa7dad60a5d01b94a5e76fe6381930386ebafddecbe092
-size 19722497
+oid sha256:24730ee2c1d483262dc1fc1ca41aaec8bc9d4ced24cd41fd276044fe7579bd61
+size 19710608

scanvi/model.pt

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:b285beda7bfd67347ae96bc496b068cfa6645e1aed7d57ca319086f9cfa6848d
+oid sha256:06c399864b0163f4b5307bc34c41f0b0ff64379cb4bdb6089db7eb7daef04a61
 size 11647532

scvi/model.pt

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:b79d4577527c65c80f01a54044033c6b88cd7025c51fca7f3dd4ee038fbc74f6
+oid sha256:f54f5eadd74f910d8412ef06c84b9c3e1d25a61d81626db71b7ae1a09e93d7fb
 size 11073853

scvi_knn_classifier.joblib

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:d52e0cf67b67573ef7476605cb6a834511bb400225690509790b58e5d6e5e16d
-size 10456421
+oid sha256:84e668df7542219ac8c275397f122e9c4d83af749d1e8d3c85479e8376cb4c06
+size 10461122

svm_classifier_cuml.joblib

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:a1dbe5e1d1b4298471399ef4b9be11849bb8b85e14f5e768928f9813dc9d3d6c
+oid sha256:ca645d507425d441a908c39e6a9a3b61d759f8b754f90185f486a12750b4bc4e
 size 427627

xgboost_classifier.model

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:8a83b4f0160ca4ddc24ed387395c70383e482585d00000b31f1ce87eb5389a72
-size 6921932
+oid sha256:4a994eb5f7d637e30b6825f26d9147617efa692f098d4e4be7d2f0c2aff3f3d2
+size 6910578