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popV
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tabula_sapiens_Germline

Joblib
popV
biology
genomics
single-cell
AnnData:0.12.2
scikit_learn:1.7.2
organism:Homo sapiens
Python:3.12.8
popV:0.6.0
tissue: Testis
tissue: Ovary
Model card Files
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Community
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@@ -33,19 +33,19 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | spermatid | 410 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.97 | 0.98 | 0.98 | 0.99 |
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- | spermatocyte | 300 | 0.97 | 0.96 | 0.98 | 0.98 | 0.00 | 0.95 | 0.98 | 0.97 | 0.98 |
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- | male germ cell | 7 | 1.00 | 0.93 | 0.93 | 0.88 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | spermatogonium | 8 | 0.94 | 0.55 | 0.77 | 0.74 | 0.00 | 0.84 | 0.94 | 0.94 | 1.00 |
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  The train accuracies are computed on the training data.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | spermatid | 3599 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |
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- | spermatocyte | 2770 | 0.97 | 0.98 | 0.99 | 0.98 | 0.00 | 0.96 | 0.98 | 0.97 | 0.99 |
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- | male germ cell | 109 | 0.95 | 0.96 | 0.98 | 0.92 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |
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- | spermatogonium | 56 | 0.78 | 0.85 | 0.91 | 0.60 | 0.00 | 0.78 | 0.91 | 0.84 | 0.90 |
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  </details>
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | spermatid | 409 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |
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+ | spermatocyte | 304 | 0.98 | 0.96 | 0.98 | 0.97 | 0.00 | 0.97 | 0.99 | 0.97 | 0.98 |
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+ | male germ cell | 7 | 0.92 | 1.00 | 0.92 | 0.71 | 0.00 | 0.92 | 0.92 | 0.92 | 0.92 |
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+ | spermatogonium | 6 | 1.00 | 0.50 | 0.80 | 0.25 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
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  The train accuracies are computed on the training data.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | spermatid | 3600 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
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+ | spermatocyte | 2766 | 0.97 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.99 |
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+ | male germ cell | 109 | 0.96 | 0.96 | 0.98 | 0.90 | 0.00 | 0.99 | 1.00 | 1.00 | 0.98 |
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+ | spermatogonium | 58 | 0.79 | 0.82 | 0.91 | 0.36 | 0.00 | 0.80 | 0.95 | 0.91 | 0.92 |
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  </details>
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