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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| cardiac endothelial cell | 1000 | 0.99 | 0.98 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| regular atrial cardiac myocyte | 601 | 0.84 | 0.74 | 0.84 | 0.77 | 0.00 | 0.77 | 0.92 | 0.95 | 0.91 |\n| ventricular cardiac muscle cell | 262 | 0.50 | 0.31 | 0.67 | 0.57 | 0.00 | 0.46 | 0.84 | 0.88 | 0.75 |\n| pericyte | 201 | 0.91 | 0.74 | 0.93 | 0.89 | 0.00 | 0.93 | 0.95 | 0.95 | 0.94 |\n| fibroblast of cardiac tissue | 186 | 0.99 | 0.97 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| smooth muscle cell | 155 | 0.84 | 0.85 | 0.88 | 0.77 | 0.00 | 0.86 | 0.89 | 0.92 | 0.90 |\n| macrophage | 74 | 0.95 | 0.95 | 0.96 | 0.93 | 0.00 | 0.96 | 0.94 | 0.95 | 0.95 |\n| CD8-positive, alpha-beta T cell | 32 | 0.78 | 0.79 | 0.91 | 0.78 | 0.00 | 0.88 | 0.88 | 0.86 | 0.85 |\n| mesothelial cell | 13 | 0.96 | 0.56 | 0.92 | 0.89 | 0.00 | 0.80 | 0.96 | 0.96 | 0.96 |\n| erythrocyte | 12 | 0.67 | 0.65 | 0.88 | 0.88 | 0.00 | 0.69 | 0.69 | 0.71 | 0.67 |\n| neutrophil | 12 | 0.96 | 0.96 | 0.96 | 0.92 | 0.00 | 0.92 | 0.96 | 0.85 | 0.96 |\n| monocyte | 12 | 0.74 | 0.29 | 0.67 | 0.64 | 0.00 | 0.56 | 0.76 | 0.70 | 0.76 |\n| neuron | 9 | 1.00 | 1.00 | 1.00 | 0.78 | 0.00 | 0.78 | 1.00 | 1.00 | 1.00 |\n| natural killer cell | 9 | 0.50 | 0.18 | 0.75 | 0.44 | 0.00 | 0.67 | 0.59 | 0.17 | 0.31 |\n| CD4-positive, alpha-beta T cell | 5 | 0.00 | 0.71 | 0.80 | 0.60 | 0.00 | 0.77 | 0.83 | 1.00 | 0.91 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| cardiac endothelial cell | 9092 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| regular atrial cardiac myocyte | 5215 | 0.84 | 0.55 | 0.91 | 0.90 | 0.00 | 0.98 | 0.92 | 0.96 | 0.95 |\n| ventricular cardiac muscle cell | 2337 | 0.52 | 0.33 | 0.80 | 0.76 | 0.00 | 0.97 | 0.85 | 0.93 | 0.90 |\n| pericyte | 1828 | 0.92 | 0.57 | 0.96 | 0.95 | 0.00 | 0.95 | 0.96 | 0.96 | 0.97 |\n| fibroblast of cardiac tissue | 1761 | 0.99 | 0.93 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| smooth muscle cell | 1362 | 0.83 | 0.85 | 0.93 | 0.88 | 0.00 | 0.90 | 0.91 | 0.91 | 0.94 |\n| macrophage | 617 | 0.91 | 0.94 | 0.95 | 0.95 | 0.00 | 0.95 | 0.98 | 0.96 | 0.98 |\n| CD8-positive, alpha-beta T cell | 276 | 0.77 | 0.80 | 0.86 | 0.83 | 0.00 | 0.96 | 1.00 | 1.00 | 0.95 |\n| mesothelial cell | 143 | 0.96 | 0.31 | 0.97 | 0.96 | 0.00 | 0.93 | 0.99 | 0.99 | 0.98 |\n| erythrocyte | 131 | 0.83 | 0.71 | 0.95 | 0.91 | 0.00 | 0.89 | 0.86 | 0.91 | 0.87 |\n| neutrophil | 128 | 0.99 | 0.99 | 0.98 | 0.96 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| monocyte | 112 | 0.56 | 0.45 | 0.80 | 0.83 | 0.00 | 0.72 | 0.98 | 0.93 | 0.97 |\n| neuron | 73 | 0.93 | 0.90 | 0.99 | 0.86 | 0.00 | 0.88 | 0.99 | 0.98 | 0.97 |\n| natural killer cell | 70 | 0.44 | 0.24 | 0.67 | 0.52 | 0.00 | 0.91 | 1.00 | 1.00 | 0.88 |\n| CD4-positive, alpha-beta T cell | 64 | 0.00 | 0.73 | 0.81 | 0.63 | 0.00 | 0.93 | 1.00 | 1.00 | 0.96 |\n| B cell | 16 | 0.82 | 0.81 | 0.82 | 0.80 | 0.00 | 0.94 | 1.00 | 1.00 | 0.97 |\n| mature NK T cell | 7 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 0.60 |\n| plasmacytoid dendritic cell | 6 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.23 | 1.00 | 1.00 | 1.00 |\n| T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.06 | 1.00 | 1.00 | 0.50 |\n| plasma cell | 3 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 0.31 | 1.00 | 1.00 | 1.00 |\n| mast cell | 3 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 0.80 |\n| platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.07 | 1.00 | 1.00 | 1.00 |"
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celltypist.pkl

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checkpoint

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scanvi/model.pt

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scvi/model.pt

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