popV version: 0.6.0

.gitattributes

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+harmony_knn_classifier.index filter=lfs diff=lfs merge=lfs -text
+scvi_knn_classifier.index filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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README.md

@@ -1,90 +0,0 @@
----
-library_name: popV
-license: cc-by-4.0
-tags:
-- biology
-- genomics
-- single-cell
-- anndata_version:0.11.3
-- python_version:3.11.11
-- popV
-- 'tissue: Heart'
----
-
-Popular Vote (popV) model for automated cell type annotation of single-cell RNA-seq data. We provide here pretrained models
-for plug-in use in your own analysis.
-Follow our [tutorial](https://github.com/YosefLab/popV/blob/main/tabula_sapiens_tutorial.ipynb) to learn how to use the model for cell type annotation.
-
-# Model description
-
-Tabula Sapiens is a benchmark, first-draft human cell atlas of over 1.1M cells from 28 organs of 24 normal human subjects. This work is the product of the Tabula Sapiens Consortium. Taking the organs from the same individual controls for genetic background, age, environment, and epigenetic effects, and allows detailed analysis and comparison of cell types that are shared between tissues.
-
-**Link to CELLxGENE**:
-Link to the [data](https://cellxgene.cziscience.com/e/e6a11140-2545-46bc-929e-da243eed2cae.cxg/) in the CELLxGENE browser for interactive exploration of the data and download of the source data.
-
-**Training Code URL**:
-Not provided by uploader.
-
-# Metrics
-
-We provide here accuracies for each of the experts and the ensemble model. The validation set accuracies are
-computed on a 10% random subset of the data that was not used for training.
-
-| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
-| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| cardiac endothelial cell | 1025 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |
-| regular atrial cardiac myocyte | 571 | 0.83 | 0.55 | 0.83 | 0.80 | 0.00 | 0.70 | 0.92 | 0.95 | 0.90 |
-| ventricular cardiac muscle cell | 252 | 0.49 | 0.34 | 0.68 | 0.47 | 0.00 | 0.55 | 0.85 | 0.90 | 0.75 |
-| pericyte | 212 | 0.93 | 0.61 | 0.93 | 0.89 | 0.00 | 0.93 | 0.93 | 0.93 | 0.94 |
-| fibroblast of cardiac tissue | 193 | 0.99 | 0.95 | 0.99 | 0.98 | 0.00 | 0.90 | 0.99 | 0.99 | 0.99 |
-| smooth muscle cell | 152 | 0.86 | 0.85 | 0.87 | 0.80 | 0.00 | 0.79 | 0.85 | 0.84 | 0.88 |
-| macrophage | 71 | 0.95 | 0.96 | 0.95 | 0.79 | 0.00 | 0.96 | 0.96 | 0.97 | 0.97 |
-| CD8-positive, alpha-beta T cell | 27 | 0.74 | 0.72 | 0.77 | 0.57 | 0.00 | 0.83 | 0.81 | 0.76 | 0.78 |
-| mesothelial cell | 19 | 0.97 | 0.48 | 0.97 | 0.97 | 0.00 | 0.67 | 0.95 | 0.95 | 0.97 |
-| erythrocyte | 11 | 0.67 | 0.65 | 0.83 | 0.83 | 0.00 | 0.62 | 0.71 | 0.74 | 0.67 |
-| neutrophil | 16 | 1.00 | 1.00 | 1.00 | 0.88 | 0.00 | 0.94 | 0.97 | 0.97 | 1.00 |
-| monocyte | 9 | 0.89 | 0.20 | 0.71 | 0.70 | 0.00 | 0.75 | 0.82 | 0.84 | 0.88 |
-| neuron | 9 | 1.00 | 0.94 | 1.00 | 0.75 | 0.00 | 0.62 | 1.00 | 1.00 | 1.00 |
-| natural killer cell | 9 | 0.00 | 0.15 | 0.40 | 0.18 | 0.00 | 0.56 | 0.59 | 0.29 | 0.17 |
-| CD4-positive, alpha-beta T cell | 7 | 0.00 | 0.75 | 0.67 | 0.33 | 0.00 | 0.88 | 0.75 | 0.80 | 0.88 |
-| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-
-The train accuracies are computed on the training data.
-
-| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
-| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| cardiac endothelial cell | 9067 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |
-| regular atrial cardiac myocyte | 5245 | 0.85 | 0.32 | 0.92 | 0.91 | 0.00 | 0.97 | 0.93 | 0.96 | 0.96 |
-| ventricular cardiac muscle cell | 2347 | 0.55 | 0.38 | 0.81 | 0.79 | 0.00 | 0.95 | 0.87 | 0.92 | 0.91 |
-| pericyte | 1817 | 0.93 | 0.50 | 0.96 | 0.92 | 0.00 | 0.96 | 0.97 | 0.96 | 0.97 |
-| fibroblast of cardiac tissue | 1754 | 0.99 | 0.95 | 0.99 | 0.99 | 0.00 | 0.93 | 0.99 | 0.99 | 0.99 |
-| smooth muscle cell | 1365 | 0.86 | 0.85 | 0.92 | 0.85 | 0.00 | 0.83 | 0.91 | 0.91 | 0.94 |
-| macrophage | 620 | 0.93 | 0.94 | 0.96 | 0.87 | 0.00 | 0.96 | 0.98 | 0.96 | 0.97 |
-| CD8-positive, alpha-beta T cell | 281 | 0.75 | 0.80 | 0.87 | 0.77 | 0.00 | 0.97 | 1.00 | 1.00 | 0.95 |
-| mesothelial cell | 137 | 0.96 | 0.24 | 0.96 | 0.95 | 0.00 | 0.77 | 0.99 | 0.98 | 0.97 |
-| erythrocyte | 132 | 0.77 | 0.71 | 0.94 | 0.89 | 0.00 | 0.78 | 0.86 | 0.87 | 0.85 |
-| neutrophil | 124 | 0.98 | 0.98 | 0.98 | 0.95 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |
-| monocyte | 115 | 0.77 | 0.40 | 0.81 | 0.76 | 0.00 | 0.87 | 1.00 | 0.91 | 0.96 |
-| neuron | 73 | 0.94 | 0.95 | 0.99 | 0.86 | 0.00 | 0.72 | 0.97 | 0.96 | 0.96 |
-| natural killer cell | 70 | 0.00 | 0.35 | 0.67 | 0.46 | 0.00 | 0.90 | 0.99 | 1.00 | 0.87 |
-| CD4-positive, alpha-beta T cell | 62 | 0.00 | 0.70 | 0.81 | 0.56 | 0.00 | 0.93 | 1.00 | 1.00 | 0.97 |
-| B cell | 16 | 0.00 | 0.81 | 0.86 | 0.36 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
-| mature NK T cell | 7 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.92 | 1.00 | 1.00 | 0.25 |
-| plasmacytoid dendritic cell | 6 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
-| T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.30 | 1.00 | 1.00 | 0.50 |
-| plasma cell | 3 | 0.00 | 0.00 | 0.50 | 0.50 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |
-| mast cell | 3 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |
-| platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |
-
-</details>
-
-
-# References
-
-Tabula Sapiens reveals transcription factor expression, senescence effects, and sex-specific features in cell types from 28 human organs and tissues, The Tabula Sapiens Consortium; bioRxiv, doi: https://doi.org/10.1101/2024.12.03.626516

accuracies.json

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 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| cardiac endothelial cell | 1025 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |\n| regular atrial cardiac myocyte | 571 | 0.83 | 0.55 | 0.83 | 0.80 | 0.00 | 0.70 | 0.92 | 0.95 | 0.90 |\n| ventricular cardiac muscle cell | 252 | 0.49 | 0.34 | 0.68 | 0.47 | 0.00 | 0.55 | 0.85 | 0.90 | 0.75 |\n| pericyte | 212 | 0.93 | 0.61 | 0.93 | 0.89 | 0.00 | 0.93 | 0.93 | 0.93 | 0.94 |\n| fibroblast of cardiac tissue | 193 | 0.99 | 0.95 | 0.99 | 0.98 | 0.00 | 0.90 | 0.99 | 0.99 | 0.99 |\n| smooth muscle cell | 152 | 0.86 | 0.85 | 0.87 | 0.80 | 0.00 | 0.79 | 0.85 | 0.84 | 0.88 |\n| macrophage | 71 | 0.95 | 0.96 | 0.95 | 0.79 | 0.00 | 0.96 | 0.96 | 0.97 | 0.97 |\n| CD8-positive, alpha-beta T cell | 27 | 0.74 | 0.72 | 0.77 | 0.57 | 0.00 | 0.83 | 0.81 | 0.76 | 0.78 |\n| mesothelial cell | 19 | 0.97 | 0.48 | 0.97 | 0.97 | 0.00 | 0.67 | 0.95 | 0.95 | 0.97 |\n| erythrocyte | 11 | 0.67 | 0.65 | 0.83 | 0.83 | 0.00 | 0.62 | 0.71 | 0.74 | 0.67 |\n| neutrophil | 16 | 1.00 | 1.00 | 1.00 | 0.88 | 0.00 | 0.94 | 0.97 | 0.97 | 1.00 |\n| monocyte | 9 | 0.89 | 0.20 | 0.71 | 0.70 | 0.00 | 0.75 | 0.82 | 0.84 | 0.88 |\n| neuron | 9 | 1.00 | 0.94 | 1.00 | 0.75 | 0.00 | 0.62 | 1.00 | 1.00 | 1.00 |\n| natural killer cell | 9 | 0.00 | 0.15 | 0.40 | 0.18 | 0.00 | 0.56 | 0.59 | 0.29 | 0.17 |\n| CD4-positive, alpha-beta T cell | 7 | 0.00 | 0.75 | 0.67 | 0.33 | 0.00 | 0.88 | 0.75 | 0.80 | 0.88 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| cardiac endothelial cell | 9067 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |\n| regular atrial cardiac myocyte | 5245 | 0.85 | 0.32 | 0.92 | 0.91 | 0.00 | 0.97 | 0.93 | 0.96 | 0.96 |\n| ventricular cardiac muscle cell | 2347 | 0.55 | 0.38 | 0.81 | 0.79 | 0.00 | 0.95 | 0.87 | 0.92 | 0.91 |\n| pericyte | 1817 | 0.93 | 0.50 | 0.96 | 0.92 | 0.00 | 0.96 | 0.97 | 0.96 | 0.97 |\n| fibroblast of cardiac tissue | 1754 | 0.99 | 0.95 | 0.99 | 0.99 | 0.00 | 0.93 | 0.99 | 0.99 | 0.99 |\n| smooth muscle cell | 1365 | 0.86 | 0.85 | 0.92 | 0.85 | 0.00 | 0.83 | 0.91 | 0.91 | 0.94 |\n| macrophage | 620 | 0.93 | 0.94 | 0.96 | 0.87 | 0.00 | 0.96 | 0.98 | 0.96 | 0.97 |\n| CD8-positive, alpha-beta T cell | 281 | 0.75 | 0.80 | 0.87 | 0.77 | 0.00 | 0.97 | 1.00 | 1.00 | 0.95 |\n| mesothelial cell | 137 | 0.96 | 0.24 | 0.96 | 0.95 | 0.00 | 0.77 | 0.99 | 0.98 | 0.97 |\n| erythrocyte | 132 | 0.77 | 0.71 | 0.94 | 0.89 | 0.00 | 0.78 | 0.86 | 0.87 | 0.85 |\n| neutrophil | 124 | 0.98 | 0.98 | 0.98 | 0.95 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |\n| monocyte | 115 | 0.77 | 0.40 | 0.81 | 0.76 | 0.00 | 0.87 | 1.00 | 0.91 | 0.96 |\n| neuron | 73 | 0.94 | 0.95 | 0.99 | 0.86 | 0.00 | 0.72 | 0.97 | 0.96 | 0.96 |\n| natural killer cell | 70 | 0.00 | 0.35 | 0.67 | 0.46 | 0.00 | 0.90 | 0.99 | 1.00 | 0.87 |\n| CD4-positive, alpha-beta T cell | 62 | 0.00 | 0.70 | 0.81 | 0.56 | 0.00 | 0.93 | 1.00 | 1.00 | 0.97 |\n| B cell | 16 | 0.00 | 0.81 | 0.86 | 0.36 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 7 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.92 | 1.00 | 1.00 | 0.25 |\n| plasmacytoid dendritic cell | 6 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.30 | 1.00 | 1.00 | 0.50 |\n| plasma cell | 3 | 0.00 | 0.00 | 0.50 | 0.50 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |\n| mast cell | 3 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |\n| platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| cardiac endothelial cell | 1010 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| regular atrial cardiac myocyte | 586 | 0.83 | 0.70 | 0.85 | 0.79 | 0.00 | 0.67 | 0.92 | 0.95 | 0.89 |\n| ventricular cardiac muscle cell | 257 | 0.46 | 0.32 | 0.66 | 0.39 | 0.00 | 0.54 | 0.85 | 0.90 | 0.69 |\n| pericyte | 212 | 0.92 | 0.82 | 0.93 | 0.92 | 0.00 | 0.93 | 0.95 | 0.93 | 0.95 |\n| fibroblast of cardiac tissue | 190 | 0.99 | 0.96 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| smooth muscle cell | 154 | 0.86 | 0.86 | 0.88 | 0.83 | 0.00 | 0.86 | 0.89 | 0.88 | 0.91 |\n| macrophage | 70 | 0.95 | 0.95 | 0.95 | 0.91 | 0.00 | 0.93 | 0.95 | 0.96 | 0.96 |\n| CD8-positive, alpha-beta T cell | 25 | 0.76 | 0.73 | 0.78 | 0.70 | 0.00 | 0.84 | 0.77 | 0.75 | 0.81 |\n| mesothelial cell | 18 | 0.97 | 0.29 | 0.97 | 0.89 | 0.00 | 0.50 | 0.97 | 0.89 | 0.97 |\n| erythrocyte | 11 | 0.65 | 0.62 | 0.77 | 0.74 | 0.00 | 0.56 | 0.69 | 0.83 | 0.67 |\n| neutrophil | 16 | 1.00 | 1.00 | 1.00 | 0.97 | 0.00 | 0.94 | 0.97 | 0.97 | 1.00 |\n| monocyte | 10 | 0.84 | 0.75 | 0.80 | 0.59 | 0.00 | 0.76 | 0.82 | 0.84 | 0.89 |\n| neuron | 9 | 1.00 | 1.00 | 1.00 | 0.94 | 0.00 | 0.95 | 1.00 | 1.00 | 1.00 |\n| natural killer cell | 9 | 0.00 | 0.15 | 0.43 | 0.17 | 0.00 | 0.43 | 0.62 | 0.17 | 0.17 |\n| CD4-positive, alpha-beta T cell | 6 | 0.00 | 0.77 | 0.77 | 0.83 | 0.00 | 1.00 | 0.71 | 0.77 | 1.00 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| cardiac endothelial cell | 9082 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| regular atrial cardiac myocyte | 5230 | 0.85 | 0.73 | 0.89 | 0.82 | 0.00 | 0.96 | 0.92 | 0.96 | 0.93 |\n| ventricular cardiac muscle cell | 2342 | 0.55 | 0.41 | 0.74 | 0.51 | 0.00 | 0.95 | 0.86 | 0.91 | 0.82 |\n| pericyte | 1817 | 0.94 | 0.82 | 0.96 | 0.94 | 0.00 | 0.96 | 0.96 | 0.97 | 0.97 |\n| fibroblast of cardiac tissue | 1757 | 0.99 | 0.96 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| smooth muscle cell | 1363 | 0.86 | 0.89 | 0.90 | 0.89 | 0.00 | 0.91 | 0.91 | 0.92 | 0.93 |\n| macrophage | 621 | 0.93 | 0.95 | 0.95 | 0.94 | 0.00 | 0.95 | 0.98 | 0.95 | 0.98 |\n| CD8-positive, alpha-beta T cell | 283 | 0.79 | 0.84 | 0.83 | 0.77 | 0.00 | 0.96 | 1.00 | 1.00 | 0.93 |\n| mesothelial cell | 138 | 0.96 | 0.48 | 0.96 | 0.80 | 0.00 | 0.56 | 0.99 | 0.95 | 0.98 |\n| erythrocyte | 132 | 0.76 | 0.74 | 0.93 | 0.80 | 0.00 | 0.82 | 0.90 | 0.91 | 0.88 |\n| neutrophil | 124 | 0.98 | 0.98 | 0.94 | 0.97 | 0.00 | 0.97 | 1.00 | 1.00 | 0.98 |\n| monocyte | 114 | 0.64 | 0.68 | 0.72 | 0.73 | 0.00 | 0.83 | 0.98 | 0.92 | 0.93 |\n| neuron | 73 | 0.93 | 0.95 | 0.95 | 0.96 | 0.00 | 0.92 | 0.95 | 0.95 | 0.96 |\n| natural killer cell | 70 | 0.00 | 0.46 | 0.55 | 0.50 | 0.00 | 0.92 | 1.00 | 1.00 | 0.81 |\n| CD4-positive, alpha-beta T cell | 63 | 0.00 | 0.78 | 0.66 | 0.59 | 0.00 | 0.98 | 1.00 | 1.00 | 0.92 |\n| B cell | 16 | 0.81 | 0.81 | 0.76 | 0.72 | 0.00 | 0.94 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.47 | 1.00 | 1.00 | 0.25 |\n| plasmacytoid dendritic cell | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.63 | 1.00 | 1.00 | 1.00 |\n| T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.18 | 1.00 | 1.00 | 0.80 |\n| plasma cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| mast cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |\n| platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 1.00 | 1.00 | 1.00 |"
 }

celltypist.pkl

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metadata.json

@@ -1,31 +0,0 @@
-{
-    "popv_version": "0.5.0",
-    "anndata_version": "0.11.3",
-    "setup_dict": {
-        "ref_labels_key": "popv_labels",
-        "ref_batch_key": "batch_key",
-        "unknown_celltype_label": "unassigned"
-    },
-    "prediction_keys": [
-        "popv_celltypist_prediction",
-        "popv_knn_bbknn_prediction",
-        "popv_knn_harmony_prediction",
-        "popv_knn_on_scvi_prediction",
-        "popv_onclass_prediction",
-        "popv_scanvi_prediction",
-        "popv_svm_prediction",
-        "popv_xgboost_prediction"
-    ],
-    "method_kwargs": {},
-    "methods": [
-        "CELLTYPIST",
-        "KNN_BBKNN",
-        "KNN_HARMONY",
-        "KNN_SCVI",
-        "ONCLASS",
-        "SCANVI_POPV",
-        "Support_Vector",
-        "XGboost"
-    ],
-    "cellxgene_url": "https://cellxgene.cziscience.com/e/e6a11140-2545-46bc-929e-da243eed2cae.cxg/"
-}

minified_ref_adata.h5ad

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:7b884cb50f72bd29d0c363d20d19fe993dc2ff440aed1dadf3a56e375b41f4ce
-size 38319368

preprocessing.json

@@ -31,7 +31,6 @@
         "ENSG00000006715",
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-        "ENSG00000006831",
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@@ -88,6 +87,7 @@
         "ENSG00000014919",
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+        "ENSG00000015479",
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@@ -137,6 +137,7 @@
         "ENSG00000038002",
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@@ -153,10 +154,10 @@
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@@ -192,7 +193,6 @@
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@@ -240,7 +240,6 @@
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@@ -250,7 +249,6 @@
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@@ -258,7 +256,6 @@
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@@ -266,12 +263,10 @@
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@@ -283,7 +278,6 @@
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@@ -296,7 +290,6 @@
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@@ -323,7 +316,6 @@
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@@ -337,12 +329,12 @@
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@@ -350,7 +342,6 @@
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@@ -403,16 +394,13 @@
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@@ -421,7 +409,6 @@
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@@ -474,6 +461,7 @@
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@@ -491,7 +479,6 @@
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@@ -503,7 +490,6 @@
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@@ -528,7 +514,6 @@
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@@ -536,7 +521,6 @@
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@@ -556,7 +540,6 @@
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@@ -582,9 +565,9 @@
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@@ -663,6 +646,7 @@
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@@ -677,7 +661,7 @@
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@@ -730,7 +714,6 @@
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@@ -745,7 +728,6 @@
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@@ -753,6 +735,7 @@
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@@ -766,7 +749,6 @@
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@@ -867,7 +849,6 @@
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@@ -882,16 +863,15 @@
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+        "ENSG00000112936",
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@@ -900,7 +880,6 @@
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@@ -913,6 +892,7 @@
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@@ -938,7 +918,6 @@
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@@ -949,7 +928,6 @@
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@@ -986,7 +964,6 @@
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@@ -1023,7 +1000,6 @@
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@@ -1031,7 +1007,6 @@
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@@ -1091,8 +1066,6 @@
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@@ -1117,12 +1090,11 @@
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@@ -1146,10 +1118,8 @@
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@@ -1162,6 +1132,7 @@
         "ENSG00000123095",
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+        "ENSG00000123136",
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@@ -1222,6 +1193,8 @@
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+        "ENSG00000125730",
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@@ -1282,7 +1255,6 @@
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@@ -1311,7 +1283,6 @@
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@@ -1330,7 +1301,6 @@
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@@ -1363,6 +1333,7 @@
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@@ -1382,7 +1353,6 @@
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@@ -1391,7 +1361,6 @@
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@@ -1421,6 +1390,7 @@
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+        "ENSG00000133193",
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@@ -1432,6 +1402,7 @@
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@@ -1516,12 +1487,10 @@
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@@ -1562,7 +1531,6 @@
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@@ -1581,6 +1549,7 @@
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@@ -1604,7 +1573,6 @@
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@@ -1612,6 +1580,7 @@
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@@ -1635,7 +1604,6 @@
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@@ -1657,6 +1625,7 @@
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@@ -1707,6 +1676,7 @@
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@@ -1735,7 +1705,6 @@
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@@ -1751,7 +1720,6 @@
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@@ -1792,6 +1760,7 @@
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@@ -1812,6 +1781,7 @@
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@@ -1845,7 +1815,6 @@
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@@ -1882,6 +1851,7 @@
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@@ -1942,7 +1912,6 @@
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@@ -1950,7 +1919,6 @@
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@@ -1959,11 +1927,9 @@
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@@ -2006,12 +1972,12 @@
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@@ -2116,11 +2082,9 @@
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@@ -2135,7 +2099,6 @@
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@@ -2171,7 +2134,6 @@
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@@ -2233,6 +2195,7 @@
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@@ -2281,6 +2244,7 @@
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@@ -2302,7 +2266,6 @@
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@@ -2313,7 +2276,6 @@
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@@ -2353,7 +2315,6 @@
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@@ -2392,7 +2353,6 @@
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@@ -2448,7 +2408,6 @@
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@@ -2464,6 +2423,7 @@
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@@ -2531,7 +2491,6 @@
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@@ -2550,7 +2509,6 @@
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         "ENSG00000168060",
         "ENSG00000168062",
@@ -2588,7 +2546,6 @@
         "ENSG00000168803",
         "ENSG00000168806",
         "ENSG00000168807",
-        "ENSG00000168818",
         "ENSG00000168824",
         "ENSG00000168883",
         "ENSG00000168884",
@@ -2625,7 +2582,6 @@
         "ENSG00000169490",
         "ENSG00000169583",
         "ENSG00000169598",
-        "ENSG00000169629",
         "ENSG00000169682",
         "ENSG00000169683",
         "ENSG00000169714",
@@ -2676,12 +2632,11 @@
         "ENSG00000170571",
         "ENSG00000170619",
         "ENSG00000170633",
-        "ENSG00000170667",
         "ENSG00000170681",
         "ENSG00000170684",
         "ENSG00000170745",
-        "ENSG00000170779",
         "ENSG00000170802",
+        "ENSG00000170846",
         "ENSG00000170854",
         "ENSG00000170876",
         "ENSG00000170915",
@@ -2700,7 +2655,6 @@
         "ENSG00000171227",
         "ENSG00000171307",
         "ENSG00000171345",
-        "ENSG00000171428",
         "ENSG00000171443",
         "ENSG00000171451",
         "ENSG00000171453",
@@ -2709,10 +2663,8 @@
         "ENSG00000171492",
         "ENSG00000171522",
         "ENSG00000171574",
-        "ENSG00000171604",
         "ENSG00000171649",
         "ENSG00000171680",
-        "ENSG00000171700",
         "ENSG00000171729",
         "ENSG00000171777",
         "ENSG00000171792",
@@ -2761,6 +2713,7 @@
         "ENSG00000173083",
         "ENSG00000173085",
         "ENSG00000173137",
+        "ENSG00000173157",
         "ENSG00000173193",
         "ENSG00000173200",
         "ENSG00000173214",
@@ -2772,7 +2725,6 @@
         "ENSG00000173409",
         "ENSG00000173456",
         "ENSG00000173540",
-        "ENSG00000173545",
         "ENSG00000173548",
         "ENSG00000173588",
         "ENSG00000173614",
@@ -2823,6 +2775,7 @@
         "ENSG00000175197",
         "ENSG00000175203",
         "ENSG00000175264",
+        "ENSG00000175279",
         "ENSG00000175287",
         "ENSG00000175344",
         "ENSG00000175348",
@@ -2842,7 +2795,6 @@
         "ENSG00000175899",
         "ENSG00000175906",
         "ENSG00000175931",
-        "ENSG00000175967",
         "ENSG00000175970",
         "ENSG00000176024",
         "ENSG00000176049",
@@ -2872,6 +2824,8 @@
         "ENSG00000177125",
         "ENSG00000177189",
         "ENSG00000177191",
+        "ENSG00000177192",
+        "ENSG00000177337",
         "ENSG00000177406",
         "ENSG00000177409",
         "ENSG00000177432",
@@ -2881,7 +2835,6 @@
         "ENSG00000177575",
         "ENSG00000177595",
         "ENSG00000177613",
-        "ENSG00000177628",
         "ENSG00000177674",
         "ENSG00000177675",
         "ENSG00000177685",
@@ -2890,11 +2843,11 @@
         "ENSG00000177791",
         "ENSG00000177842",
         "ENSG00000177854",
-        "ENSG00000177879",
         "ENSG00000177932",
         "ENSG00000177946",
         "ENSG00000177951",
         "ENSG00000177981",
+        "ENSG00000177989",
         "ENSG00000178026",
         "ENSG00000178028",
         "ENSG00000178033",
@@ -2946,6 +2899,7 @@
         "ENSG00000179542",
         "ENSG00000179562",
         "ENSG00000179583",
+        "ENSG00000179593",
         "ENSG00000179627",
         "ENSG00000179630",
         "ENSG00000179772",
@@ -2957,6 +2911,7 @@
         "ENSG00000180071",
         "ENSG00000180096",
         "ENSG00000180139",
+        "ENSG00000180190",
         "ENSG00000180257",
         "ENSG00000180336",
         "ENSG00000180353",
@@ -3003,12 +2958,10 @@
         "ENSG00000181982",
         "ENSG00000182013",
         "ENSG00000182054",
-        "ENSG00000182057",
         "ENSG00000182103",
         "ENSG00000182118",
         "ENSG00000182132",
         "ENSG00000182179",
-        "ENSG00000182180",
         "ENSG00000182220",
         "ENSG00000182255",
         "ENSG00000182318",
@@ -3029,12 +2982,12 @@
         "ENSG00000182853",
         "ENSG00000182858",
         "ENSG00000182866",
-        "ENSG00000182873",
         "ENSG00000182916",
         "ENSG00000182919",
         "ENSG00000182923",
         "ENSG00000182934",
         "ENSG00000182952",
+        "ENSG00000182957",
         "ENSG00000182993",
         "ENSG00000183060",
         "ENSG00000183077",
@@ -3059,16 +3012,12 @@
         "ENSG00000183579",
         "ENSG00000183605",
         "ENSG00000183615",
-        "ENSG00000183688",
         "ENSG00000183696",
-        "ENSG00000183762",
-        "ENSG00000183763",
         "ENSG00000183765",
         "ENSG00000183775",
         "ENSG00000183778",
         "ENSG00000183793",
         "ENSG00000183801",
-        "ENSG00000183864",
         "ENSG00000183888",
         "ENSG00000183963",
         "ENSG00000183977",
@@ -3085,6 +3034,7 @@
         "ENSG00000184381",
         "ENSG00000184428",
         "ENSG00000184432",
+        "ENSG00000184441",
         "ENSG00000184445",
         "ENSG00000184497",
         "ENSG00000184500",
@@ -3096,7 +3046,6 @@
         "ENSG00000184602",
         "ENSG00000184613",
         "ENSG00000184619",
-        "ENSG00000184677",
         "ENSG00000184678",
         "ENSG00000184730",
         "ENSG00000184785",
@@ -3106,7 +3055,6 @@
         "ENSG00000184831",
         "ENSG00000184840",
         "ENSG00000184887",
-        "ENSG00000184898",
         "ENSG00000184905",
         "ENSG00000184916",
         "ENSG00000184937",
@@ -3114,22 +3062,23 @@
         "ENSG00000184979",
         "ENSG00000184992",
         "ENSG00000185009",
+        "ENSG00000185010",
         "ENSG00000185053",
+        "ENSG00000185101",
         "ENSG00000185127",
         "ENSG00000185133",
         "ENSG00000185163",
-        "ENSG00000185189",
         "ENSG00000185215",
         "ENSG00000185222",
         "ENSG00000185245",
         "ENSG00000185252",
         "ENSG00000185298",
         "ENSG00000185304",
-        "ENSG00000185324",
         "ENSG00000185338",
         "ENSG00000185339",
         "ENSG00000185344",
         "ENSG00000185361",
+        "ENSG00000185432",
         "ENSG00000185437",
         "ENSG00000185442",
         "ENSG00000185480",
@@ -3142,7 +3091,6 @@
         "ENSG00000185634",
         "ENSG00000185651",
         "ENSG00000185674",
-        "ENSG00000185722",
         "ENSG00000185730",
         "ENSG00000185745",
         "ENSG00000185753",
@@ -3153,6 +3101,7 @@
         "ENSG00000185862",
         "ENSG00000185869",
         "ENSG00000185880",
+        "ENSG00000185885",
         "ENSG00000185909",
         "ENSG00000185917",
         "ENSG00000186017",
@@ -3168,7 +3117,6 @@
         "ENSG00000186205",
         "ENSG00000186230",
         "ENSG00000186283",
-        "ENSG00000186318",
         "ENSG00000186340",
         "ENSG00000186364",
         "ENSG00000186377",
@@ -3180,7 +3128,6 @@
         "ENSG00000186523",
         "ENSG00000186532",
         "ENSG00000186577",
-        "ENSG00000186638",
         "ENSG00000186660",
         "ENSG00000186787",
         "ENSG00000186792",
@@ -3242,7 +3189,6 @@
         "ENSG00000188739",
         "ENSG00000188766",
         "ENSG00000188783",
-        "ENSG00000188785",
         "ENSG00000188786",
         "ENSG00000188807",
         "ENSG00000188868",
@@ -3268,7 +3214,6 @@
         "ENSG00000189350",
         "ENSG00000189362",
         "ENSG00000189369",
-        "ENSG00000189420",
         "ENSG00000196074",
         "ENSG00000196091",
         "ENSG00000196110",
@@ -3280,11 +3225,11 @@
         "ENSG00000196155",
         "ENSG00000196267",
         "ENSG00000196338",
-        "ENSG00000196352",
         "ENSG00000196363",
         "ENSG00000196371",
         "ENSG00000196372",
         "ENSG00000196378",
+        "ENSG00000196381",
         "ENSG00000196458",
         "ENSG00000196460",
         "ENSG00000196466",
@@ -3308,7 +3253,6 @@
         "ENSG00000196932",
         "ENSG00000196998",
         "ENSG00000197013",
-        "ENSG00000197016",
         "ENSG00000197020",
         "ENSG00000197021",
         "ENSG00000197037",
@@ -3325,26 +3269,24 @@
         "ENSG00000197261",
         "ENSG00000197275",
         "ENSG00000197291",
-        "ENSG00000197301",
         "ENSG00000197362",
         "ENSG00000197363",
         "ENSG00000197417",
         "ENSG00000197429",
         "ENSG00000197457",
         "ENSG00000197465",
-        "ENSG00000197479",
         "ENSG00000197497",
         "ENSG00000197561",
-        "ENSG00000197563",
+        "ENSG00000197568",
         "ENSG00000197579",
         "ENSG00000197586",
+        "ENSG00000197608",
         "ENSG00000197619",
         "ENSG00000197620",
         "ENSG00000197646",
         "ENSG00000197647",
         "ENSG00000197713",
         "ENSG00000197746",
-        "ENSG00000197747",
         "ENSG00000197753",
         "ENSG00000197766",
         "ENSG00000197774",
@@ -3354,11 +3296,9 @@
         "ENSG00000197826",
         "ENSG00000197841",
         "ENSG00000197863",
-        "ENSG00000197880",
         "ENSG00000197885",
         "ENSG00000197928",
         "ENSG00000197933",
-        "ENSG00000197935",
         "ENSG00000197937",
         "ENSG00000197943",
         "ENSG00000197948",
@@ -3416,7 +3356,6 @@
         "ENSG00000198855",
         "ENSG00000198858",
         "ENSG00000198860",
-        "ENSG00000198870",
         "ENSG00000198876",
         "ENSG00000198886",
         "ENSG00000198888",
@@ -3431,8 +3370,6 @@
         "ENSG00000198951",
         "ENSG00000198959",
         "ENSG00000198960",
-        "ENSG00000203280",
-        "ENSG00000203288",
         "ENSG00000203326",
         "ENSG00000203356",
         "ENSG00000203485",
@@ -3456,22 +3393,18 @@
         "ENSG00000204209",
         "ENSG00000204252",
         "ENSG00000204257",
-        "ENSG00000204261",
         "ENSG00000204264",
-        "ENSG00000204267",
         "ENSG00000204287",
         "ENSG00000204301",
         "ENSG00000204305",
         "ENSG00000204311",
         "ENSG00000204348",
         "ENSG00000204356",
-        "ENSG00000204380",
         "ENSG00000204381",
         "ENSG00000204386",
         "ENSG00000204390",
         "ENSG00000204427",
         "ENSG00000204438",
-        "ENSG00000204439",
         "ENSG00000204472",
         "ENSG00000204520",
         "ENSG00000204524",
@@ -3484,7 +3417,7 @@
         "ENSG00000204604",
         "ENSG00000204611",
         "ENSG00000204619",
-        "ENSG00000204625",
+        "ENSG00000204620",
         "ENSG00000204628",
         "ENSG00000204634",
         "ENSG00000204644",
@@ -3527,10 +3460,8 @@
         "ENSG00000211445",
         "ENSG00000211456",
         "ENSG00000211584",
-        "ENSG00000212719",
         "ENSG00000212747",
         "ENSG00000212907",
-        "ENSG00000213020",
         "ENSG00000213024",
         "ENSG00000213066",
         "ENSG00000213085",
@@ -3547,7 +3478,6 @@
         "ENSG00000213516",
         "ENSG00000213533",
         "ENSG00000213614",
-        "ENSG00000213654",
         "ENSG00000213780",
         "ENSG00000213782",
         "ENSG00000213888",
@@ -3556,7 +3486,6 @@
         "ENSG00000213930",
         "ENSG00000213965",
         "ENSG00000213983",
-        "ENSG00000214021",
         "ENSG00000214029",
         "ENSG00000214078",
         "ENSG00000214106",
@@ -3566,24 +3495,21 @@
         "ENSG00000214184",
         "ENSG00000214194",
         "ENSG00000214293",
-        "ENSG00000214300",
         "ENSG00000214367",
         "ENSG00000214401",
         "ENSG00000214413",
         "ENSG00000214491",
         "ENSG00000214652",
         "ENSG00000214694",
+        "ENSG00000214803",
         "ENSG00000215041",
         "ENSG00000215126",
         "ENSG00000215196",
-        "ENSG00000215251",
         "ENSG00000215252",
-        "ENSG00000215256",
         "ENSG00000215301",
         "ENSG00000215424",
         "ENSG00000215717",
         "ENSG00000215788",
-        "ENSG00000215790",
         "ENSG00000216490",
         "ENSG00000216937",
         "ENSG00000218018",
@@ -3595,7 +3521,6 @@
         "ENSG00000221909",
         "ENSG00000221916",
         "ENSG00000221926",
-        "ENSG00000221953",
         "ENSG00000221986",
         "ENSG00000221994",
         "ENSG00000222009",
@@ -3603,23 +3528,30 @@
         "ENSG00000223478",
         "ENSG00000223496",
         "ENSG00000223501",
+        "ENSG00000223522",
         "ENSG00000223547",
         "ENSG00000223561",
+        "ENSG00000223642",
         "ENSG00000223715",
+        "ENSG00000223725",
         "ENSG00000223749",
         "ENSG00000223764",
         "ENSG00000223791",
+        "ENSG00000223797",
         "ENSG00000223799",
-        "ENSG00000223923",
         "ENSG00000223960",
         "ENSG00000224046",
         "ENSG00000224086",
         "ENSG00000224563",
         "ENSG00000224660",
         "ENSG00000224729",
+        "ENSG00000224738",
         "ENSG00000224743",
         "ENSG00000224982",
+        "ENSG00000225205",
         "ENSG00000225285",
+        "ENSG00000225298",
+        "ENSG00000225313",
         "ENSG00000225342",
         "ENSG00000225434",
         "ENSG00000225442",
@@ -3639,8 +3571,8 @@
         "ENSG00000226200",
         "ENSG00000226237",
         "ENSG00000226251",
+        "ENSG00000226332",
         "ENSG00000226386",
-        "ENSG00000226445",
         "ENSG00000226648",
         "ENSG00000226742",
         "ENSG00000226808",
@@ -3651,7 +3583,7 @@
         "ENSG00000227354",
         "ENSG00000227409",
         "ENSG00000227507",
-        "ENSG00000227542",
+        "ENSG00000227540",
         "ENSG00000227544",
         "ENSG00000227896",
         "ENSG00000228109",
@@ -3670,52 +3602,64 @@
         "ENSG00000229236",
         "ENSG00000229474",
         "ENSG00000229989",
+        "ENSG00000230074",
+        "ENSG00000230648",
         "ENSG00000230844",
+        "ENSG00000231119",
         "ENSG00000231170",
         "ENSG00000231298",
+        "ENSG00000231329",
         "ENSG00000231663",
         "ENSG00000231728",
+        "ENSG00000231769",
         "ENSG00000231770",
+        "ENSG00000231856",
+        "ENSG00000232063",
         "ENSG00000232070",
         "ENSG00000232098",
         "ENSG00000232310",
         "ENSG00000232352",
         "ENSG00000232434",
         "ENSG00000232653",
+        "ENSG00000232807",
         "ENSG00000232859",
-        "ENSG00000232940",
         "ENSG00000232973",
         "ENSG00000233008",
         "ENSG00000233070",
         "ENSG00000233117",
         "ENSG00000233184",
+        "ENSG00000233223",
         "ENSG00000233237",
-        "ENSG00000233334",
+        "ENSG00000233251",
         "ENSG00000233429",
+        "ENSG00000233461",
+        "ENSG00000233621",
         "ENSG00000233695",
         "ENSG00000233822",
         "ENSG00000233930",
         "ENSG00000234072",
-        "ENSG00000234263",
         "ENSG00000234432",
         "ENSG00000234465",
         "ENSG00000234616",
         "ENSG00000234650",
         "ENSG00000234745",
         "ENSG00000234771",
+        "ENSG00000234807",
+        "ENSG00000234936",
         "ENSG00000235016",
         "ENSG00000235033",
+        "ENSG00000235078",
         "ENSG00000235098",
         "ENSG00000235387",
         "ENSG00000235501",
         "ENSG00000235513",
-        "ENSG00000235590",
-        "ENSG00000235863",
         "ENSG00000235927",
         "ENSG00000235947",
         "ENSG00000235997",
         "ENSG00000236104",
         "ENSG00000236200",
+        "ENSG00000236266",
+        "ENSG00000236498",
         "ENSG00000236519",
         "ENSG00000236526",
         "ENSG00000236671",
@@ -3730,12 +3674,10 @@
         "ENSG00000237310",
         "ENSG00000237440",
         "ENSG00000237484",
-        "ENSG00000237541",
         "ENSG00000237883",
         "ENSG00000237986",
         "ENSG00000238113",
         "ENSG00000238120",
-        "ENSG00000238164",
         "ENSG00000238198",
         "ENSG00000239264",
         "ENSG00000239282",
@@ -3744,13 +3686,13 @@
         "ENSG00000239697",
         "ENSG00000239713",
         "ENSG00000239779",
+        "ENSG00000239791",
         "ENSG00000239857",
         "ENSG00000239911",
         "ENSG00000239946",
         "ENSG00000239998",
         "ENSG00000240184",
         "ENSG00000240303",
-        "ENSG00000240563",
         "ENSG00000240567",
         "ENSG00000240583",
         "ENSG00000240654",
@@ -3764,29 +3706,27 @@
         "ENSG00000241852",
         "ENSG00000241878",
         "ENSG00000241945",
+        "ENSG00000242282",
         "ENSG00000242498",
         "ENSG00000242574",
-        "ENSG00000242686",
         "ENSG00000242715",
         "ENSG00000242802",
         "ENSG00000243244",
         "ENSG00000243335",
         "ENSG00000243364",
+        "ENSG00000243477",
         "ENSG00000243646",
-        "ENSG00000243649",
         "ENSG00000243660",
         "ENSG00000243725",
         "ENSG00000243819",
         "ENSG00000243943",
         "ENSG00000243989",
-        "ENSG00000244005",
         "ENSG00000244038",
         "ENSG00000244041",
         "ENSG00000244203",
         "ENSG00000244219",
         "ENSG00000244405",
         "ENSG00000244479",
-        "ENSG00000244482",
         "ENSG00000244968",
         "ENSG00000245060",
         "ENSG00000245067",
@@ -3807,46 +3747,58 @@
         "ENSG00000245970",
         "ENSG00000246263",
         "ENSG00000246366",
-        "ENSG00000246422",
         "ENSG00000246451",
         "ENSG00000246548",
         "ENSG00000246877",
         "ENSG00000247077",
         "ENSG00000247092",
+        "ENSG00000247121",
         "ENSG00000247240",
-        "ENSG00000247287",
         "ENSG00000247373",
         "ENSG00000247400",
         "ENSG00000247596",
+        "ENSG00000247679",
         "ENSG00000247982",
         "ENSG00000248019",
         "ENSG00000248098",
+        "ENSG00000248144",
+        "ENSG00000248161",
         "ENSG00000248174",
         "ENSG00000248483",
         "ENSG00000248485",
         "ENSG00000248550",
+        "ENSG00000248787",
+        "ENSG00000249222",
         "ENSG00000249249",
+        "ENSG00000249631",
+        "ENSG00000249679",
         "ENSG00000249709",
         "ENSG00000249786",
         "ENSG00000249790",
         "ENSG00000249816",
         "ENSG00000249859",
+        "ENSG00000250132",
         "ENSG00000250159",
+        "ENSG00000250241",
         "ENSG00000250337",
-        "ENSG00000250410",
         "ENSG00000250510",
         "ENSG00000250616",
         "ENSG00000250742",
         "ENSG00000250802",
         "ENSG00000250988",
+        "ENSG00000251143",
+        "ENSG00000251259",
         "ENSG00000251301",
+        "ENSG00000251417",
         "ENSG00000251442",
         "ENSG00000251450",
         "ENSG00000251562",
+        "ENSG00000251615",
         "ENSG00000251629",
+        "ENSG00000251661",
+        "ENSG00000253200",
         "ENSG00000253276",
         "ENSG00000253552",
-        "ENSG00000253641",
         "ENSG00000253719",
         "ENSG00000253846",
         "ENSG00000253958",
@@ -3854,21 +3806,26 @@
         "ENSG00000254109",
         "ENSG00000254245",
         "ENSG00000254415",
-        "ENSG00000254470",
         "ENSG00000254685",
         "ENSG00000254703",
         "ENSG00000254862",
         "ENSG00000254986",
+        "ENSG00000255046",
         "ENSG00000255052",
         "ENSG00000255150",
         "ENSG00000255197",
         "ENSG00000255284",
+        "ENSG00000255399",
         "ENSG00000255423",
+        "ENSG00000255501",
+        "ENSG00000255507",
         "ENSG00000255561",
         "ENSG00000255650",
         "ENSG00000255760",
         "ENSG00000255874",
         "ENSG00000256043",
+        "ENSG00000256060",
+        "ENSG00000256061",
         "ENSG00000256223",
         "ENSG00000256235",
         "ENSG00000256269",
@@ -3878,29 +3835,37 @@
         "ENSG00000257218",
         "ENSG00000257285",
         "ENSG00000257365",
-        "ENSG00000257433",
         "ENSG00000257591",
-        "ENSG00000257605",
-        "ENSG00000257698",
-        "ENSG00000258136",
+        "ENSG00000258365",
+        "ENSG00000258646",
         "ENSG00000258655",
         "ENSG00000258708",
         "ENSG00000258727",
         "ENSG00000258738",
+        "ENSG00000258740",
+        "ENSG00000258752",
+        "ENSG00000258768",
         "ENSG00000258818",
+        "ENSG00000259138",
         "ENSG00000259207",
         "ENSG00000259291",
+        "ENSG00000259321",
+        "ENSG00000259370",
         "ENSG00000259448",
         "ENSG00000259498",
         "ENSG00000259577",
         "ENSG00000259783",
+        "ENSG00000259891",
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@@ -4023,7 +4023,7 @@
         "platelet",
         "regular atrial cardiac myocyte",
         "smooth muscle cell",
-        "unassigned",
-        "ventricular cardiac muscle cell"
+        "ventricular cardiac muscle cell",
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     ]
 }

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