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accuracies.json CHANGED
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- "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal epithelial cell of mammary gland | 1543 | 0.99 | 0.95 | 1.00 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 1.00 |\n| fibroblast of breast | 525 | 0.98 | 0.97 | 0.99 | 0.99 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| CD8-positive, alpha-beta T cell | 270 | 0.88 | 0.92 | 0.91 | 0.83 | 0.00 | 0.87 | 0.89 | 0.91 | 0.92 |\n| basal cell | 196 | 0.97 | 0.93 | 0.97 | 0.97 | 0.00 | 0.94 | 0.97 | 0.96 | 0.99 |\n| progenitor cell of mammary luminal epithelium | 166 | 0.99 | 0.31 | 0.99 | 0.99 | 0.00 | 0.97 | 0.97 | 0.98 | 0.99 |\n| endothelial cell | 162 | 0.96 | 0.96 | 0.98 | 0.98 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |\n| macrophage | 66 | 0.95 | 0.96 | 0.98 | 0.99 | 0.00 | 0.96 | 0.99 | 0.97 | 0.98 |\n| CD4-positive, alpha-beta T cell | 68 | 0.67 | 0.74 | 0.69 | 0.25 | 0.00 | 0.56 | 0.67 | 0.77 | 0.73 |\n| vascular associated smooth muscle cell | 48 | 0.91 | 0.96 | 0.97 | 0.94 | 0.00 | 0.83 | 0.86 | 0.90 | 0.96 |\n| plasma cell | 27 | 1.00 | 0.90 | 0.96 | 0.98 | 0.00 | 0.81 | 0.98 | 1.00 | 1.00 |\n| T cell | 17 | 0.45 | 0.15 | 0.30 | 0.30 | 0.00 | 0.44 | 0.35 | 0.45 | 0.44 |\n| mast cell | 3 | 0.50 | 0.00 | 0.86 | 1.00 | 0.00 | 0.33 | 1.00 | 1.00 | 1.00 |\n| B cell | 1 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 0.00 | 1.00 |\n| mature NK T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| basophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| natural killer cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
3
- "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal epithelial cell of mammary gland | 13889 | 0.99 | 0.93 | 1.00 | 1.00 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| fibroblast of breast | 4745 | 0.98 | 0.95 | 0.99 | 0.99 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| CD8-positive, alpha-beta T cell | 2383 | 0.89 | 0.90 | 0.94 | 0.87 | 0.00 | 0.88 | 0.93 | 0.94 | 0.96 |\n| basal cell | 1623 | 0.96 | 0.87 | 0.98 | 0.98 | 0.00 | 0.93 | 0.96 | 0.95 | 0.97 |\n| progenitor cell of mammary luminal epithelium | 1528 | 0.99 | 0.01 | 0.99 | 0.99 | 0.00 | 0.97 | 0.97 | 0.98 | 0.99 |\n| endothelial cell | 1372 | 0.97 | 0.97 | 0.98 | 0.99 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |\n| macrophage | 619 | 0.96 | 0.96 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |\n| CD4-positive, alpha-beta T cell | 613 | 0.66 | 0.64 | 0.79 | 0.43 | 0.00 | 0.71 | 0.82 | 0.87 | 0.88 |\n| vascular associated smooth muscle cell | 518 | 0.95 | 0.92 | 0.97 | 0.97 | 0.00 | 0.91 | 0.95 | 0.93 | 0.96 |\n| plasma cell | 266 | 0.97 | 0.84 | 0.98 | 0.94 | 0.00 | 0.80 | 0.99 | 0.97 | 0.99 |\n| T cell | 206 | 0.63 | 0.20 | 0.67 | 0.46 | 0.00 | 0.67 | 0.85 | 0.84 | 0.88 |\n| mast cell | 34 | 0.60 | 0.04 | 0.89 | 0.81 | 0.00 | 0.43 | 1.00 | 1.00 | 0.99 |\n| B cell | 14 | 0.00 | 0.60 | 1.00 | 0.79 | 0.00 | 0.80 | 1.00 | 0.97 | 1.00 |\n| mature NK T cell | 13 | 0.00 | 0.00 | 0.00 | 0.47 | 0.00 | 0.70 | 1.00 | 1.00 | 0.92 |\n| basophil | 12 | 0.00 | 0.23 | 0.40 | 0.14 | 0.00 | 0.65 | 1.00 | 1.00 | 0.91 |\n| natural killer cell | 6 | 0.00 | 0.00 | 0.29 | 0.00 | 0.00 | 0.46 | 0.86 | 1.00 | 0.50 |\n| regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.11 | 1.00 | 1.00 | 0.00 |"
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+ "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal epithelial cell of mammary gland | 1547 | 0.99 | 0.95 | 1.00 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 1.00 |\n| fibroblast of breast | 521 | 0.99 | 0.97 | 0.99 | 0.98 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |\n| CD8-positive, alpha-beta T cell | 260 | 0.90 | 0.89 | 0.90 | 0.83 | 0.00 | 0.81 | 0.88 | 0.91 | 0.93 |\n| basal cell | 202 | 0.97 | 0.94 | 0.97 | 0.95 | 0.00 | 0.95 | 0.98 | 0.97 | 0.98 |\n| progenitor cell of mammary luminal epithelium | 165 | 0.98 | 0.20 | 0.99 | 0.99 | 0.00 | 0.98 | 0.98 | 0.97 | 0.99 |\n| endothelial cell | 165 | 0.96 | 0.96 | 0.97 | 0.96 | 0.00 | 0.96 | 0.98 | 0.96 | 0.98 |\n| macrophage | 69 | 0.96 | 0.93 | 0.99 | 0.99 | 0.00 | 0.99 | 0.98 | 0.97 | 0.99 |\n| CD4-positive, alpha-beta T cell | 71 | 0.72 | 0.63 | 0.67 | 0.25 | 0.00 | 0.60 | 0.68 | 0.78 | 0.78 |\n| vascular associated smooth muscle cell | 46 | 0.92 | 0.96 | 0.96 | 0.92 | 0.00 | 0.91 | 0.91 | 0.91 | 0.95 |\n| plasma cell | 25 | 1.00 | 0.96 | 0.96 | 0.96 | 0.00 | 0.89 | 0.96 | 1.00 | 1.00 |\n| T cell | 18 | 0.43 | 0.07 | 0.37 | 0.28 | 0.00 | 0.54 | 0.41 | 0.40 | 0.53 |\n| mast cell | 2 | 0.40 | 0.00 | 1.00 | 0.67 | 0.00 | 0.67 | 0.80 | 0.80 | 1.00 |\n| B cell | 1 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.67 | 1.00 | 0.00 | 1.00 |\n| mature NK T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| basophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| natural killer cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
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+ "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal epithelial cell of mammary gland | 13885 | 0.99 | 0.94 | 1.00 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 1.00 |\n| fibroblast of breast | 4749 | 0.98 | 0.96 | 0.99 | 0.98 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |\n| CD8-positive, alpha-beta T cell | 2393 | 0.89 | 0.90 | 0.94 | 0.87 | 0.00 | 0.86 | 0.91 | 0.94 | 0.96 |\n| basal cell | 1617 | 0.96 | 0.88 | 0.98 | 0.95 | 0.00 | 0.93 | 0.97 | 0.95 | 0.98 |\n| progenitor cell of mammary luminal epithelium | 1529 | 0.98 | 0.01 | 0.99 | 0.99 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| endothelial cell | 1369 | 0.97 | 0.97 | 0.98 | 0.99 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |\n| macrophage | 616 | 0.96 | 0.95 | 0.99 | 0.98 | 0.00 | 0.98 | 0.98 | 0.97 | 0.98 |\n| CD4-positive, alpha-beta T cell | 610 | 0.65 | 0.61 | 0.78 | 0.44 | 0.00 | 0.68 | 0.80 | 0.88 | 0.89 |\n| vascular associated smooth muscle cell | 520 | 0.95 | 0.92 | 0.97 | 0.94 | 0.00 | 0.93 | 0.96 | 0.93 | 0.97 |\n| plasma cell | 268 | 0.98 | 0.82 | 0.98 | 0.89 | 0.00 | 0.91 | 1.00 | 0.97 | 0.99 |\n| T cell | 205 | 0.64 | 0.19 | 0.67 | 0.46 | 0.00 | 0.65 | 0.80 | 0.81 | 0.86 |\n| mast cell | 35 | 0.56 | 0.13 | 0.89 | 0.73 | 0.00 | 0.88 | 1.00 | 0.95 | 0.99 |\n| B cell | 14 | 0.00 | 0.64 | 1.00 | 0.60 | 0.00 | 0.72 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 13 | 0.00 | 0.00 | 0.14 | 0.00 | 0.00 | 0.96 | 0.96 | 1.00 | 0.76 |\n| basophil | 12 | 0.00 | 0.29 | 0.29 | 0.60 | 0.00 | 0.77 | 1.00 | 0.89 | 0.91 |\n| natural killer cell | 6 | 0.00 | 0.00 | 0.29 | 0.00 | 0.00 | 0.67 | 0.86 | 0.92 | 0.50 |\n| regulatory T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.25 | 1.00 | 1.00 | 1.00 |"
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3878
  "ENSG00000259687",
 
3879
  "ENSG00000259943",
3880
  "ENSG00000260027",
3881
  "ENSG00000260219",
@@ -3948,7 +3948,6 @@
3948
  "ENSG00000270761",
3949
  "ENSG00000270959",
3950
  "ENSG00000271122",
3951
- "ENSG00000271303",
3952
  "ENSG00000271576",
3953
  "ENSG00000271643",
3954
  "ENSG00000271913",
@@ -3957,6 +3956,7 @@
3957
  "ENSG00000272398",
3958
  "ENSG00000272462",
3959
  "ENSG00000272523",
 
3960
  "ENSG00000272602",
3961
  "ENSG00000272606",
3962
  "ENSG00000272666",
 
158
  "ENSG00000050426",
159
  "ENSG00000050555",
160
  "ENSG00000050628",
161
+ "ENSG00000051825",
162
  "ENSG00000052126",
163
  "ENSG00000052344",
164
  "ENSG00000052723",
 
239
  "ENSG00000067836",
240
  "ENSG00000068097",
241
  "ENSG00000068366",
242
+ "ENSG00000068489",
243
  "ENSG00000068697",
244
  "ENSG00000068885",
245
  "ENSG00000069122",
 
276
  "ENSG00000073756",
277
  "ENSG00000073861",
278
  "ENSG00000074370",
 
279
  "ENSG00000074590",
280
  "ENSG00000074621",
281
  "ENSG00000074660",
 
293
  "ENSG00000075643",
294
  "ENSG00000075826",
295
  "ENSG00000076242",
296
+ "ENSG00000076248",
297
  "ENSG00000076258",
298
  "ENSG00000076356",
299
  "ENSG00000076382",
 
354
  "ENSG00000085662",
355
  "ENSG00000085719",
356
  "ENSG00000085721",
 
357
  "ENSG00000085982",
358
  "ENSG00000086289",
359
  "ENSG00000086300",
 
391
  "ENSG00000089163",
392
  "ENSG00000089169",
393
  "ENSG00000089195",
394
+ "ENSG00000089250",
395
  "ENSG00000089692",
396
  "ENSG00000089775",
397
  "ENSG00000090097",
 
512
  "ENSG00000100890",
513
  "ENSG00000100906",
514
  "ENSG00000100908",
 
515
  "ENSG00000100949",
516
  "ENSG00000100968",
517
  "ENSG00000100985",
 
617
  "ENSG00000104164",
618
  "ENSG00000104205",
619
  "ENSG00000104237",
620
+ "ENSG00000104321",
621
  "ENSG00000104331",
622
  "ENSG00000104368",
623
  "ENSG00000104381",
 
625
  "ENSG00000104497",
626
  "ENSG00000104611",
627
  "ENSG00000104635",
 
628
  "ENSG00000104691",
629
  "ENSG00000104695",
630
  "ENSG00000104723",
 
659
  "ENSG00000105583",
660
  "ENSG00000105607",
661
  "ENSG00000105647",
662
+ "ENSG00000105649",
663
  "ENSG00000105705",
664
  "ENSG00000105707",
665
  "ENSG00000105732",
 
941
  "ENSG00000115963",
942
  "ENSG00000115993",
943
  "ENSG00000115998",
 
944
  "ENSG00000116106",
945
  "ENSG00000116132",
946
  "ENSG00000116133",
 
976
  "ENSG00000117010",
977
  "ENSG00000117016",
978
  "ENSG00000117036",
 
979
  "ENSG00000117143",
980
  "ENSG00000117155",
981
  "ENSG00000117226",
 
1343
  "ENSG00000131634",
1344
  "ENSG00000131711",
1345
  "ENSG00000131724",
 
1346
  "ENSG00000131778",
1347
  "ENSG00000131781",
1348
  "ENSG00000131788",
 
1427
  "ENSG00000134376",
1428
  "ENSG00000134440",
1429
  "ENSG00000134460",
1430
+ "ENSG00000134516",
1431
  "ENSG00000134531",
1432
  "ENSG00000134533",
1433
  "ENSG00000134575",
 
1629
  "ENSG00000138642",
1630
  "ENSG00000138650",
1631
  "ENSG00000138658",
 
1632
  "ENSG00000138722",
1633
  "ENSG00000138735",
1634
  "ENSG00000138741",
 
1787
  "ENSG00000143412",
1788
  "ENSG00000143416",
1789
  "ENSG00000143450",
1790
+ "ENSG00000143473",
1791
  "ENSG00000143479",
1792
  "ENSG00000143498",
1793
  "ENSG00000143499",
 
1797
  "ENSG00000143590",
1798
  "ENSG00000143603",
1799
  "ENSG00000143633",
1800
+ "ENSG00000143727",
1801
  "ENSG00000143742",
1802
  "ENSG00000143786",
1803
  "ENSG00000143842",
 
1893
  "ENSG00000147202",
1894
  "ENSG00000147257",
1895
  "ENSG00000147416",
 
1896
  "ENSG00000147454",
1897
  "ENSG00000147526",
1898
  "ENSG00000147535",
1899
  "ENSG00000147536",
1900
  "ENSG00000147576",
1901
  "ENSG00000147604",
 
1902
  "ENSG00000147724",
1903
  "ENSG00000147852",
1904
  "ENSG00000147872",
 
1982
  "ENSG00000151611",
1983
  "ENSG00000151617",
1984
  "ENSG00000151715",
1985
+ "ENSG00000151725",
1986
  "ENSG00000151726",
1987
  "ENSG00000151773",
1988
  "ENSG00000151778",
 
2179
  "ENSG00000160055",
2180
  "ENSG00000160062",
2181
  "ENSG00000160094",
 
2182
  "ENSG00000160111",
2183
  "ENSG00000160113",
2184
  "ENSG00000160131",
 
2203
  "ENSG00000160753",
2204
  "ENSG00000160785",
2205
  "ENSG00000160791",
 
2206
  "ENSG00000160862",
2207
  "ENSG00000160867",
2208
  "ENSG00000160957",
 
2402
  "ENSG00000164896",
2403
  "ENSG00000164920",
2404
  "ENSG00000164933",
2405
+ "ENSG00000164941",
2406
  "ENSG00000164949",
2407
  "ENSG00000164951",
2408
  "ENSG00000165023",
 
2442
  "ENSG00000165819",
2443
  "ENSG00000165861",
2444
  "ENSG00000165868",
 
2445
  "ENSG00000165983",
2446
  "ENSG00000165997",
2447
  "ENSG00000166025",
 
2535
  "ENSG00000167785",
2536
  "ENSG00000167840",
2537
  "ENSG00000167842",
2538
+ "ENSG00000167850",
2539
  "ENSG00000167895",
2540
  "ENSG00000167900",
2541
  "ENSG00000167925",
 
2579
  "ENSG00000168778",
2580
  "ENSG00000168792",
2581
  "ENSG00000168795",
 
2582
  "ENSG00000168803",
2583
  "ENSG00000168806",
2584
  "ENSG00000168824",
 
2604
  "ENSG00000169255",
2605
  "ENSG00000169282",
2606
  "ENSG00000169371",
 
2607
  "ENSG00000169403",
2608
  "ENSG00000169413",
2609
  "ENSG00000169418",
 
2861
  "ENSG00000176473",
2862
  "ENSG00000176532",
2863
  "ENSG00000176563",
2864
+ "ENSG00000176571",
2865
  "ENSG00000176601",
2866
  "ENSG00000176619",
2867
  "ENSG00000176624",
 
2913
  "ENSG00000178460",
2914
  "ENSG00000178498",
2915
  "ENSG00000178567",
 
2916
  "ENSG00000178685",
2917
  "ENSG00000178694",
2918
  "ENSG00000178700",
 
3061
  "ENSG00000183765",
3062
  "ENSG00000183773",
3063
  "ENSG00000183793",
3064
+ "ENSG00000183813",
3065
  "ENSG00000183814",
3066
  "ENSG00000183833",
3067
  "ENSG00000183844",
 
3292
  "ENSG00000196549",
3293
  "ENSG00000196557",
3294
  "ENSG00000196569",
 
3295
  "ENSG00000196591",
3296
  "ENSG00000196605",
3297
  "ENSG00000196611",
 
3319
  "ENSG00000197016",
3320
  "ENSG00000197037",
3321
  "ENSG00000197044",
3322
+ "ENSG00000197046",
3323
  "ENSG00000197057",
3324
  "ENSG00000197114",
3325
  "ENSG00000197124",
 
3371
  "ENSG00000198042",
3372
  "ENSG00000198053",
3373
  "ENSG00000198060",
3374
+ "ENSG00000198075",
3375
  "ENSG00000198081",
3376
  "ENSG00000198088",
3377
  "ENSG00000198093",
 
3386
  "ENSG00000198208",
3387
  "ENSG00000198246",
3388
  "ENSG00000198270",
 
3389
  "ENSG00000198315",
3390
  "ENSG00000198331",
3391
  "ENSG00000198336",
 
3418
  "ENSG00000198804",
3419
  "ENSG00000198833",
3420
  "ENSG00000198844",
3421
+ "ENSG00000198846",
3422
  "ENSG00000198855",
3423
  "ENSG00000198860",
3424
  "ENSG00000198865",
 
3615
  "ENSG00000227210",
3616
  "ENSG00000227258",
3617
  "ENSG00000227403",
3618
+ "ENSG00000227517",
3619
  "ENSG00000228016",
3620
  "ENSG00000228063",
3621
  "ENSG00000228109",
 
3875
  "ENSG00000259498",
3876
  "ENSG00000259642",
3877
  "ENSG00000259687",
3878
+ "ENSG00000259883",
3879
  "ENSG00000259943",
3880
  "ENSG00000260027",
3881
  "ENSG00000260219",
 
3948
  "ENSG00000270761",
3949
  "ENSG00000270959",
3950
  "ENSG00000271122",
 
3951
  "ENSG00000271576",
3952
  "ENSG00000271643",
3953
  "ENSG00000271913",
 
3956
  "ENSG00000272398",
3957
  "ENSG00000272462",
3958
  "ENSG00000272523",
3959
+ "ENSG00000272525",
3960
  "ENSG00000272602",
3961
  "ENSG00000272606",
3962
  "ENSG00000272666",
pynndescent_index.joblib CHANGED
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  version https://git-lfs.github.com/spec/v1
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+ size 22793308
scanvi/model.pt CHANGED
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  version https://git-lfs.github.com/spec/v1
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- oid sha256:bdde514e05e05f507ec6789ef37ed4c7b5b685f7c32820108f8af4f3bc737e2f
3
  size 11571436
 
1
  version https://git-lfs.github.com/spec/v1
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+ oid sha256:d3ce9a982afc7cec9a774816d9a04ac4af483eb8470bcc8200317648d05b70d9
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  size 11571436
scvi/model.pt CHANGED
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  size 11026429
 
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  size 11026429
scvi_knn_classifier.joblib CHANGED
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  version https://git-lfs.github.com/spec/v1
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- size 12028213
 
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  version https://git-lfs.github.com/spec/v1
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svm_classifier_cuml.joblib CHANGED
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  size 291291
 
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  size 291291
xgboost_classifier.model CHANGED
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