popV version: 0.5.3

.gitattributes

@@ -35,3 +35,6 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
 OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
 minified_ref_adata.h5ad filter=lfs diff=lfs merge=lfs -text
+faiss_index.index filter=lfs diff=lfs merge=lfs -text
+harmony_knn_classifier.index filter=lfs diff=lfs merge=lfs -text
+scvi_knn_classifier.index filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:d9a6e4c4e730aa4827010e1fd126e3afc78dd8a3905bae64ae5a838d547d0a65
+oid sha256:8338ba7ddbae7fe237ce09ebf174257d522dfd2a1eed60355a1986283d8132df
 size 27239224

OnClass.npz

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:46b87398a4f3ea7fe4ee695cc7b4103712ef4a8e8095c53b3dc27b78cd7922e3
-size 144112274
+oid sha256:f3b9f151a5d6de67a111606ce6240562f7936ea838926c81b5f2bb2f73fdc74a
+size 144112264

accuracies.json

@@ -1,4 +1,4 @@
 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| eye photoreceptor cell | 150 | 1.00 | 0.99 | 0.96 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |\n| enteroglial cell | 78 | 1.00 | 0.99 | 0.95 | 0.97 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| neuron | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| retinal bipolar neuron | 4 | 0.89 | 0.40 | 0.40 | 0.57 | 0.00 | 0.89 | 1.00 | 0.75 | 0.86 |\n| retina horizontal cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| eye photoreceptor cell | 1375 | 1.00 | 1.00 | 0.98 | 0.99 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| enteroglial cell | 864 | 1.00 | 0.95 | 0.96 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| neuron | 72 | 0.99 | 0.00 | 0.90 | 1.00 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| retinal bipolar neuron | 53 | 0.95 | 0.77 | 0.94 | 0.71 | 0.00 | 0.96 | 1.00 | 1.00 | 0.99 |\n| retina horizontal cell | 4 | 0.00 | 0.00 | 0.00 | 0.40 | 0.00 | 0.67 | 1.00 | 1.00 | 0.86 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| eye photoreceptor cell | 142 | 1.00 | 1.00 | 0.98 | 0.99 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| enteroglial cell | 72 | 1.00 | 0.99 | 0.99 | 0.97 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| neuron | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| retinal bipolar neuron | 9 | 0.95 | 0.94 | 0.80 | 0.82 | 0.00 | 0.95 | 0.95 | 0.95 | 0.95 |\n| retina horizontal cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| eye photoreceptor cell | 1380 | 1.00 | 1.00 | 0.99 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| enteroglial cell | 860 | 0.99 | 0.96 | 0.97 | 0.91 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| neuron | 70 | 0.94 | 0.00 | 0.89 | 0.51 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| retinal bipolar neuron | 48 | 0.96 | 0.87 | 0.92 | 0.87 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |\n| retina horizontal cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.32 | 1.00 | 1.00 | 1.00 |"
 }

celltypist.pkl

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:fe2c73dc728d637061eb38dd7e321fc6542a344b2cfd517e3b43a08ed9f1ac81
+oid sha256:39ae4d836824ab8b50ef617b6c95c9c323f37bab58c003699414074cb2b2e16c
 size 249316

faiss_index.index

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5bad1c7d22736d26cdb9ed3585f8f4563784255ec1ceb8a571b196b18450b195
+size 483245

harmony_knn_classifier.index

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:93e4825a54df8d86edbfe0ffef07a5f5d24d7cb2b3f16e1008ebd42a2ec9d27f
+size 472445

scanvi/model.pt

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:5e49327b2f85a1441bbf43906d101b1ea50d67373d29806d0d78d132f1a59b2e
-size 11330476
+oid sha256:10fce654ce1ec7fc584ce9eb7ab505ba3a5728e33784915ee3d9e0535471f0f4
+size 11339701

scvi/model.pt

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:ea8da23bb9c26f671e90334fa575f0dc8dec412108ad885a70c802ad2e53542f
-size 10828477
+oid sha256:a81ac3b4249f1c15734c633a56f179cbbaf5fc27b8ae1de1ee2436c1cf547843
+size 10841862

scvi_knn_classifier.index

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:28638e1640b49760f924b09f369839dd8d38999c3877f3c7b8d44fa96d8f1a84
+size 189005

svm_classifier.joblib

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:a6ac005ce3800d64144ba5676699751f59c695ba5898173c50c30f5aa7b18845
-size 804074
+oid sha256:e5bc961a5859fb95083155030b53f489e5c41274ddfc8aade0e7108e625ff246
+size 81428

xgboost_classifier.model

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:eefc5ffc91083a3e680865864f569a3753241254761ac6e0b038154a49649950
-size 1283426
+oid sha256:9e26b66ce34122376ebf6db1aeea581faee36b9493609ebe41beb667280965c9
+size 1077117