popV version: 0.6.0

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OnClass.npz

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accuracies.json

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 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| eye photoreceptor cell | 143 | 1.00 | 1.00 | 0.98 | 0.98 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| enteroglial cell | 72 | 1.00 | 1.00 | 0.99 | 0.94 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| neuron | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| retinal bipolar neuron | 8 | 0.94 | 0.88 | 0.55 | 0.77 | 0.00 | 0.94 | 0.94 | 0.94 | 0.94 |\n| retina horizontal cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| eye photoreceptor cell | 1379 | 1.00 | 1.00 | 0.98 | 0.97 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| enteroglial cell | 861 | 1.00 | 0.96 | 0.97 | 0.91 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| neuron | 70 | 0.99 | 0.00 | 0.92 | 0.48 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| retinal bipolar neuron | 49 | 0.95 | 0.90 | 0.89 | 0.82 | 0.00 | 0.94 | 1.00 | 1.00 | 1.00 |\n| retina horizontal cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.32 | 1.00 | 1.00 | 1.00 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| eye photoreceptor cell | 145 | 1.00 | 1.00 | 0.98 | 0.99 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| enteroglial cell | 73 | 1.00 | 0.99 | 0.98 | 0.96 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| neuron | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| retinal bipolar neuron | 9 | 1.00 | 0.94 | 0.62 | 0.80 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| retina horizontal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| eye photoreceptor cell | 1379 | 1.00 | 1.00 | 0.98 | 0.96 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| enteroglial cell | 868 | 1.00 | 0.96 | 0.96 | 0.90 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| neuron | 67 | 0.96 | 0.00 | 0.92 | 0.16 | 0.00 | 0.98 | 1.00 | 0.99 | 0.98 |\n| retinal bipolar neuron | 48 | 0.95 | 0.78 | 0.94 | 0.74 | 0.00 | 0.99 | 1.00 | 0.98 | 0.99 |\n| retina horizontal cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |"
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celltypist.pkl

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faiss_index.index

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scanvi/model.pt

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scvi/model.pt

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svm_classifier.joblib

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xgboost_classifier.model

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