popV version: 0.6.0

.gitattributes

@@ -35,3 +35,6 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
 OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
 minified_ref_adata.h5ad filter=lfs diff=lfs merge=lfs -text
+faiss_index.index filter=lfs diff=lfs merge=lfs -text
+harmony_knn_classifier.index filter=lfs diff=lfs merge=lfs -text
+scvi_knn_classifier.index filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:d2ea03aac5ad251811314510a03331b10bbc1f0703271b717abe49d6a373c090
+oid sha256:b0b939996eb02f9a3280fc30ab0d9dd023cee1ddb4d47ed4812920b4c4a1aff4
 size 27239224

OnClass.npz

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:1e65f1fd8b761bb12fe543419e0c9829a5f35e335cf521a130d5be36747a17f5
+oid sha256:0f14bfb463e931396177a5803a5495bbc092e703d677b532c1b0f97235142b7c
 size 144111762

README.md

@@ -1,98 +0,0 @@
----
-library_name: popV
-license: cc-by-4.0
-tags:
-- biology
-- genomics
-- single-cell
-- anndata_version:0.11.3
-- python_version:3.11.11
-- popV
-- 'tissue: Ovary'
----
-
-Popular Vote (popV) model for automated cell type annotation of single-cell RNA-seq data. We provide here pretrained models
-for plug-in use in your own analysis.
-Follow our [tutorial](https://github.com/YosefLab/popV/blob/main/tabula_sapiens_tutorial.ipynb) to learn how to use the model for cell type annotation.
-
-# Model description
-
-Tabula Sapiens is a benchmark, first-draft human cell atlas of over 1.1M cells from 28 organs of 24 normal human subjects. This work is the product of the Tabula Sapiens Consortium. Taking the organs from the same individual controls for genetic background, age, environment, and epigenetic effects, and allows detailed analysis and comparison of cell types that are shared between tissues.
-
-**Link to CELLxGENE**:
-Link to the [data](https://cellxgene.cziscience.com/e/bb78adbb-1428-4468-bad0-63602bb974e9.cxg/) in the CELLxGENE browser for interactive exploration of the data and download of the source data.
-
-**Training Code URL**:
-Not provided by uploader.
-
-# Metrics
-
-We provide here accuracies for each of the experts and the ensemble model. The validation set accuracies are
-computed on a 10% random subset of the data that was not used for training.
-
-| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
-| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| stromal cell of ovary | 3480 | 0.98 | 0.97 | 0.96 | 0.99 | 0.00 | 0.96 | 0.97 | 0.97 | 0.99 |
-| blood vessel smooth muscle cell | 658 | 0.97 | 0.92 | 0.94 | 0.95 | 0.00 | 0.96 | 0.94 | 0.91 | 0.97 |
-| stromal cell | 226 | 0.96 | 0.75 | 0.48 | 0.92 | 0.00 | 0.91 | 0.88 | 0.90 | 0.97 |
-| endothelial cell | 174 | 0.99 | 0.99 | 1.00 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
-| smooth muscle cell | 104 | 0.96 | 0.58 | 0.69 | 0.89 | 0.00 | 0.95 | 0.94 | 0.92 | 0.96 |
-| theca cell | 121 | 0.78 | 0.75 | 0.88 | 0.81 | 0.00 | 0.66 | 0.75 | 0.72 | 0.86 |
-| macrophage | 60 | 0.95 | 0.96 | 0.95 | 0.88 | 0.00 | 0.93 | 0.93 | 0.96 | 0.97 |
-| ovarian surface epithelial cell | 19 | 0.95 | 0.89 | 0.94 | 0.74 | 0.00 | 0.54 | 0.86 | 0.95 | 0.95 |
-| glandular epithelial cell | 28 | 0.98 | 0.94 | 0.98 | 0.81 | 0.00 | 0.90 | 0.97 | 0.97 | 0.98 |
-| CD8-positive, alpha-beta T cell | 8 | 0.67 | 0.70 | 0.63 | 0.50 | 0.00 | 0.76 | 0.89 | 0.94 | 0.84 |
-| leukocyte | 4 | 0.00 | 0.00 | 0.29 | 0.40 | 0.00 | 0.75 | 0.67 | 0.86 | 0.67 |
-| CD4-positive, alpha-beta T cell | 4 | 0.00 | 0.33 | 0.29 | 0.00 | 0.00 | 0.00 | 0.67 | 0.86 | 0.40 |
-| glial cell | 1 | 0.67 | 1.00 | 0.67 | 0.00 | 0.00 | 0.02 | 0.67 | 0.67 | 0.67 |
-| oocyte | 3 | 0.75 | 1.00 | 1.00 | 0.86 | 0.00 | 1.00 | 0.86 | 1.00 | 1.00 |
-| neutrophil | 2 | 1.00 | 1.00 | 1.00 | 0.50 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
-| plasma cell | 3 | 0.67 | 0.00 | 0.80 | 1.00 | 0.00 | 1.00 | 1.00 | 0.80 | 1.00 |
-| epithelial cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| hematopoietic precursor cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-
-The train accuracies are computed on the training data.
-
-| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
-| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| stromal cell of ovary | 31523 | 0.98 | 0.97 | 0.98 | 0.99 | 0.00 | 0.97 | 0.97 | 0.97 | 0.99 |
-| blood vessel smooth muscle cell | 5984 | 0.97 | 0.89 | 0.97 | 0.96 | 0.00 | 0.97 | 0.95 | 0.92 | 0.98 |
-| stromal cell | 1933 | 0.96 | 0.72 | 0.72 | 0.93 | 0.00 | 0.95 | 0.90 | 0.93 | 0.98 |
-| endothelial cell | 1550 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
-| smooth muscle cell | 1167 | 0.97 | 0.55 | 0.84 | 0.92 | 0.00 | 0.95 | 0.96 | 0.97 | 0.98 |
-| theca cell | 917 | 0.73 | 0.62 | 0.94 | 0.84 | 0.00 | 0.64 | 0.72 | 0.71 | 0.84 |
-| macrophage | 344 | 0.90 | 0.93 | 0.96 | 0.92 | 0.00 | 0.97 | 0.96 | 0.98 | 0.98 |
-| ovarian surface epithelial cell | 222 | 0.97 | 0.95 | 0.97 | 0.92 | 0.00 | 0.67 | 0.90 | 0.96 | 1.00 |
-| glandular epithelial cell | 207 | 0.95 | 0.84 | 0.99 | 0.90 | 0.00 | 0.93 | 0.98 | 0.92 | 0.99 |
-| CD8-positive, alpha-beta T cell | 65 | 0.67 | 0.76 | 0.81 | 0.83 | 0.00 | 0.96 | 1.00 | 1.00 | 0.92 |
-| leukocyte | 23 | 0.00 | 0.30 | 0.62 | 0.75 | 0.00 | 1.00 | 1.00 | 1.00 | 0.98 |
-| CD4-positive, alpha-beta T cell | 19 | 0.00 | 0.00 | 0.45 | 0.46 | 0.00 | 0.95 | 1.00 | 1.00 | 0.73 |
-| glial cell | 19 | 0.76 | 0.00 | 0.77 | 0.57 | 0.00 | 0.06 | 0.90 | 0.84 | 0.84 |
-| oocyte | 15 | 0.62 | 0.87 | 0.85 | 0.90 | 0.00 | 0.71 | 0.83 | 0.86 | 0.83 |
-| neutrophil | 15 | 0.81 | 0.94 | 0.97 | 0.64 | 0.00 | 0.81 | 1.00 | 1.00 | 1.00 |
-| plasma cell | 11 | 0.61 | 0.53 | 0.90 | 0.80 | 0.00 | 0.83 | 0.96 | 0.81 | 0.92 |
-| epithelial cell | 8 | 0.00 | 0.00 | 0.74 | 0.57 | 0.00 | 0.73 | 1.00 | 0.94 | 1.00 |
-| plasmacytoid dendritic cell | 5 | 0.00 | 0.00 | 0.44 | 0.83 | 0.00 | 0.56 | 1.00 | 1.00 | 0.91 |
-| monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.29 | 0.00 | 0.89 | 1.00 | 1.00 | 0.40 |
-| B cell | 3 | 0.00 | 0.00 | 0.50 | 0.80 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
-| classical monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 0.50 |
-| mast cell | 3 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
-| mature NK T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.67 |
-| T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
-| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.00 |
-| hematopoietic precursor cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.03 | 1.00 | 1.00 | 1.00 |
-
-</details>
-
-
-# References
-
-Tabula Sapiens reveals transcription factor expression, senescence effects, and sex-specific features in cell types from 28 human organs and tissues, The Tabula Sapiens Consortium; bioRxiv, doi: https://doi.org/10.1101/2024.12.03.626516

accuracies.json

@@ -1,4 +1,4 @@
 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| stromal cell of ovary | 3480 | 0.98 | 0.97 | 0.96 | 0.99 | 0.00 | 0.96 | 0.97 | 0.97 | 0.99 |\n| blood vessel smooth muscle cell | 658 | 0.97 | 0.92 | 0.94 | 0.95 | 0.00 | 0.96 | 0.94 | 0.91 | 0.97 |\n| stromal cell | 226 | 0.96 | 0.75 | 0.48 | 0.92 | 0.00 | 0.91 | 0.88 | 0.90 | 0.97 |\n| endothelial cell | 174 | 0.99 | 0.99 | 1.00 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| smooth muscle cell | 104 | 0.96 | 0.58 | 0.69 | 0.89 | 0.00 | 0.95 | 0.94 | 0.92 | 0.96 |\n| theca cell | 121 | 0.78 | 0.75 | 0.88 | 0.81 | 0.00 | 0.66 | 0.75 | 0.72 | 0.86 |\n| macrophage | 60 | 0.95 | 0.96 | 0.95 | 0.88 | 0.00 | 0.93 | 0.93 | 0.96 | 0.97 |\n| ovarian surface epithelial cell | 19 | 0.95 | 0.89 | 0.94 | 0.74 | 0.00 | 0.54 | 0.86 | 0.95 | 0.95 |\n| glandular epithelial cell | 28 | 0.98 | 0.94 | 0.98 | 0.81 | 0.00 | 0.90 | 0.97 | 0.97 | 0.98 |\n| CD8-positive, alpha-beta T cell | 8 | 0.67 | 0.70 | 0.63 | 0.50 | 0.00 | 0.76 | 0.89 | 0.94 | 0.84 |\n| leukocyte | 4 | 0.00 | 0.00 | 0.29 | 0.40 | 0.00 | 0.75 | 0.67 | 0.86 | 0.67 |\n| CD4-positive, alpha-beta T cell | 4 | 0.00 | 0.33 | 0.29 | 0.00 | 0.00 | 0.00 | 0.67 | 0.86 | 0.40 |\n| glial cell | 1 | 0.67 | 1.00 | 0.67 | 0.00 | 0.00 | 0.02 | 0.67 | 0.67 | 0.67 |\n| oocyte | 3 | 0.75 | 1.00 | 1.00 | 0.86 | 0.00 | 1.00 | 0.86 | 1.00 | 1.00 |\n| neutrophil | 2 | 1.00 | 1.00 | 1.00 | 0.50 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |\n| plasma cell | 3 | 0.67 | 0.00 | 0.80 | 1.00 | 0.00 | 1.00 | 1.00 | 0.80 | 1.00 |\n| epithelial cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| hematopoietic precursor cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| stromal cell of ovary | 31523 | 0.98 | 0.97 | 0.98 | 0.99 | 0.00 | 0.97 | 0.97 | 0.97 | 0.99 |\n| blood vessel smooth muscle cell | 5984 | 0.97 | 0.89 | 0.97 | 0.96 | 0.00 | 0.97 | 0.95 | 0.92 | 0.98 |\n| stromal cell | 1933 | 0.96 | 0.72 | 0.72 | 0.93 | 0.00 | 0.95 | 0.90 | 0.93 | 0.98 |\n| endothelial cell | 1550 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| smooth muscle cell | 1167 | 0.97 | 0.55 | 0.84 | 0.92 | 0.00 | 0.95 | 0.96 | 0.97 | 0.98 |\n| theca cell | 917 | 0.73 | 0.62 | 0.94 | 0.84 | 0.00 | 0.64 | 0.72 | 0.71 | 0.84 |\n| macrophage | 344 | 0.90 | 0.93 | 0.96 | 0.92 | 0.00 | 0.97 | 0.96 | 0.98 | 0.98 |\n| ovarian surface epithelial cell | 222 | 0.97 | 0.95 | 0.97 | 0.92 | 0.00 | 0.67 | 0.90 | 0.96 | 1.00 |\n| glandular epithelial cell | 207 | 0.95 | 0.84 | 0.99 | 0.90 | 0.00 | 0.93 | 0.98 | 0.92 | 0.99 |\n| CD8-positive, alpha-beta T cell | 65 | 0.67 | 0.76 | 0.81 | 0.83 | 0.00 | 0.96 | 1.00 | 1.00 | 0.92 |\n| leukocyte | 23 | 0.00 | 0.30 | 0.62 | 0.75 | 0.00 | 1.00 | 1.00 | 1.00 | 0.98 |\n| CD4-positive, alpha-beta T cell | 19 | 0.00 | 0.00 | 0.45 | 0.46 | 0.00 | 0.95 | 1.00 | 1.00 | 0.73 |\n| glial cell | 19 | 0.76 | 0.00 | 0.77 | 0.57 | 0.00 | 0.06 | 0.90 | 0.84 | 0.84 |\n| oocyte | 15 | 0.62 | 0.87 | 0.85 | 0.90 | 0.00 | 0.71 | 0.83 | 0.86 | 0.83 |\n| neutrophil | 15 | 0.81 | 0.94 | 0.97 | 0.64 | 0.00 | 0.81 | 1.00 | 1.00 | 1.00 |\n| plasma cell | 11 | 0.61 | 0.53 | 0.90 | 0.80 | 0.00 | 0.83 | 0.96 | 0.81 | 0.92 |\n| epithelial cell | 8 | 0.00 | 0.00 | 0.74 | 0.57 | 0.00 | 0.73 | 1.00 | 0.94 | 1.00 |\n| plasmacytoid dendritic cell | 5 | 0.00 | 0.00 | 0.44 | 0.83 | 0.00 | 0.56 | 1.00 | 1.00 | 0.91 |\n| monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.29 | 0.00 | 0.89 | 1.00 | 1.00 | 0.40 |\n| B cell | 3 | 0.00 | 0.00 | 0.50 | 0.80 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| classical monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 0.50 |\n| mast cell | 3 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.67 |\n| T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.00 |\n| hematopoietic precursor cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.03 | 1.00 | 1.00 | 1.00 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| stromal cell of ovary | 3485 | 0.98 | 0.97 | 0.97 | 0.97 | 0.00 | 0.97 | 0.97 | 0.97 | 0.99 |\n| blood vessel smooth muscle cell | 656 | 0.97 | 0.92 | 0.95 | 0.92 | 0.00 | 0.96 | 0.94 | 0.92 | 0.97 |\n| stromal cell | 221 | 0.96 | 0.74 | 0.53 | 0.50 | 0.00 | 0.90 | 0.83 | 0.94 | 0.97 |\n| endothelial cell | 171 | 0.99 | 0.99 | 1.00 | 0.98 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| smooth muscle cell | 106 | 0.95 | 0.62 | 0.69 | 0.49 | 0.00 | 0.90 | 0.95 | 0.94 | 0.97 |\n| theca cell | 122 | 0.73 | 0.72 | 0.90 | 0.85 | 0.00 | 0.72 | 0.76 | 0.74 | 0.86 |\n| macrophage | 57 | 0.93 | 0.95 | 0.94 | 0.88 | 0.00 | 0.89 | 0.93 | 0.94 | 0.94 |\n| ovarian surface epithelial cell | 21 | 0.98 | 0.98 | 0.98 | 0.91 | 0.00 | 0.55 | 0.95 | 0.95 | 0.98 |\n| glandular epithelial cell | 27 | 0.98 | 0.96 | 1.00 | 0.92 | 0.00 | 0.96 | 0.96 | 0.92 | 1.00 |\n| CD8-positive, alpha-beta T cell | 8 | 0.62 | 0.64 | 0.64 | 0.67 | 0.00 | 0.60 | 0.73 | 0.80 | 0.70 |\n| leukocyte | 4 | 0.00 | 0.00 | 0.40 | 0.40 | 0.00 | 0.25 | 0.67 | 0.67 | 0.40 |\n| CD4-positive, alpha-beta T cell | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.46 | 0.00 | 0.29 | 0.00 |\n| glial cell | 1 | 0.67 | 0.00 | 0.67 | 0.00 | 0.00 | 0.15 | 0.67 | 0.67 | 0.67 |\n| oocyte | 3 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |\n| neutrophil | 2 | 1.00 | 1.00 | 1.00 | 0.50 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |\n| plasma cell | 4 | 0.67 | 0.67 | 0.40 | 0.00 | 0.00 | 0.57 | 0.67 | 0.67 | 0.67 |\n| epithelial cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 |\n| unassigned | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| hematopoietic precursor cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| stromal cell of ovary | 31518 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.97 | 0.97 | 0.97 | 0.99 |\n| blood vessel smooth muscle cell | 5986 | 0.97 | 0.91 | 0.97 | 0.93 | 0.00 | 0.96 | 0.95 | 0.93 | 0.98 |\n| stromal cell | 1938 | 0.97 | 0.76 | 0.69 | 0.65 | 0.00 | 0.95 | 0.85 | 0.92 | 0.98 |\n| endothelial cell | 1553 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| smooth muscle cell | 1165 | 0.97 | 0.58 | 0.80 | 0.60 | 0.00 | 0.93 | 0.96 | 0.96 | 0.98 |\n| theca cell | 916 | 0.71 | 0.75 | 0.92 | 0.82 | 0.00 | 0.72 | 0.72 | 0.70 | 0.86 |\n| macrophage | 347 | 0.91 | 0.94 | 0.95 | 0.93 | 0.00 | 0.94 | 0.99 | 0.98 | 0.98 |\n| ovarian surface epithelial cell | 220 | 0.96 | 0.97 | 0.97 | 0.94 | 0.00 | 0.59 | 0.94 | 0.97 | 0.98 |\n| glandular epithelial cell | 208 | 0.95 | 0.92 | 0.99 | 0.94 | 0.00 | 0.89 | 0.95 | 0.92 | 0.99 |\n| CD8-positive, alpha-beta T cell | 65 | 0.68 | 0.78 | 0.80 | 0.74 | 0.00 | 0.80 | 1.00 | 1.00 | 0.85 |\n| leukocyte | 23 | 0.00 | 0.00 | 0.45 | 0.40 | 0.00 | 0.58 | 1.00 | 0.98 | 0.76 |\n| CD4-positive, alpha-beta T cell | 17 | 0.00 | 0.00 | 0.00 | 0.23 | 0.00 | 0.80 | 1.00 | 1.00 | 0.30 |\n| glial cell | 19 | 0.76 | 0.65 | 0.81 | 0.67 | 0.00 | 0.45 | 0.84 | 0.79 | 0.88 |\n| oocyte | 15 | 0.00 | 0.90 | 0.88 | 0.88 | 0.00 | 0.73 | 0.81 | 0.86 | 0.88 |\n| neutrophil | 15 | 0.77 | 0.94 | 0.94 | 0.50 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |\n| plasma cell | 10 | 0.44 | 0.82 | 0.75 | 0.00 | 0.00 | 0.91 | 0.95 | 0.95 | 0.95 |\n| epithelial cell | 8 | 0.00 | 0.00 | 0.20 | 0.40 | 0.00 | 0.84 | 1.00 | 1.00 | 0.55 |\n| unassigned | 9 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 5 | 0.00 | 0.00 | 0.67 | 0.18 | 0.00 | 0.08 | 1.00 | 1.00 | 1.00 |\n| monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 |\n| classical monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.18 | 1.00 | 1.00 | 0.50 |\n| B cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.75 | 1.00 | 1.00 | 1.00 |\n| mast cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 |\n| T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.80 | 0.67 |\n| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.00 |\n| hematopoietic precursor cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 1.00 | 1.00 | 1.00 |"
 }

celltypist.pkl

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:1b4d93d5ebf3f19220c6bf9702c207852cbfa24b7c94ce93bd34309c9747145e
+oid sha256:e491ccc1b9ad9bb8b4f033ff9129be61cadba8f1f335800c9f0fc352c1bd5399
 size 585812

svm_classifier_cuml.joblib → faiss_index.index

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:779b944f0b34212f5ecb192664eed41534e871259c27ef87339ee25151e530a5
-size 444667
+oid sha256:ce5991e25513aa846a65a2bff8b6aedb7f2934377e5a8c80de7923ba7cd46d90
+size 8811045

harmony_knn_classifier.joblib → harmony_knn_classifier.index

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:271ec68601e32ab196b47244b1daed6ac63b58a563da666d26903e01f38b212a
-size 34243925
+oid sha256:7559cc4dda27cb1a7072179f201c778ea5d995cc4e915a50b5b9acaf8d10340c
+size 8809245

metadata.json

@@ -1,31 +0,0 @@
-{
-    "popv_version": "0.5.0",
-    "anndata_version": "0.11.3",
-    "setup_dict": {
-        "ref_labels_key": "popv_labels",
-        "ref_batch_key": "batch_key",
-        "unknown_celltype_label": "unassigned"
-    },
-    "prediction_keys": [
-        "popv_celltypist_prediction",
-        "popv_knn_bbknn_prediction",
-        "popv_knn_harmony_prediction",
-        "popv_knn_on_scvi_prediction",
-        "popv_onclass_prediction",
-        "popv_scanvi_prediction",
-        "popv_svm_prediction",
-        "popv_xgboost_prediction"
-    ],
-    "method_kwargs": {},
-    "methods": [
-        "CELLTYPIST",
-        "KNN_BBKNN",
-        "KNN_HARMONY",
-        "KNN_SCVI",
-        "ONCLASS",
-        "SCANVI_POPV",
-        "Support_Vector",
-        "XGboost"
-    ],
-    "cellxgene_url": "https://cellxgene.cziscience.com/e/bb78adbb-1428-4468-bad0-63602bb974e9.cxg/"
-}

minified_ref_adata.h5ad

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:fa3a61e7ecf6f5ef62ce713e416aba11340ec3b4c60c0d25ce592b090e3e7be7
-size 70386899

preprocessing.json

@@ -7,7 +7,6 @@
         "ENSG00000001460",
         "ENSG00000001461",
         "ENSG00000001561",
-        "ENSG00000001617",
         "ENSG00000001626",
         "ENSG00000002919",
         "ENSG00000003147",
@@ -53,7 +52,6 @@
         "ENSG00000008118",
         "ENSG00000008283",
         "ENSG00000008300",
-        "ENSG00000008382",
         "ENSG00000008394",
         "ENSG00000008735",
         "ENSG00000008838",
@@ -72,7 +70,6 @@
         "ENSG00000010932",
         "ENSG00000011201",
         "ENSG00000011426",
-        "ENSG00000011485",
         "ENSG00000012048",
         "ENSG00000012061",
         "ENSG00000012963",
@@ -84,7 +81,6 @@
         "ENSG00000013392",
         "ENSG00000013810",
         "ENSG00000014641",
-        "ENSG00000015133",
         "ENSG00000015285",
         "ENSG00000015413",
         "ENSG00000015475",
@@ -102,7 +98,6 @@
         "ENSG00000021826",
         "ENSG00000023287",
         "ENSG00000023318",
-        "ENSG00000023330",
         "ENSG00000023445",
         "ENSG00000023839",
         "ENSG00000023892",
@@ -116,13 +111,11 @@
         "ENSG00000026559",
         "ENSG00000026652",
         "ENSG00000028137",
-        "ENSG00000028277",
         "ENSG00000029993",
         "ENSG00000030110",
         "ENSG00000032389",
         "ENSG00000033011",
         "ENSG00000033122",
-        "ENSG00000035141",
         "ENSG00000036448",
         "ENSG00000036672",
         "ENSG00000036828",
@@ -135,17 +128,14 @@
         "ENSG00000039068",
         "ENSG00000040275",
         "ENSG00000040487",
-        "ENSG00000040608",
         "ENSG00000041357",
         "ENSG00000041880",
         "ENSG00000041982",
         "ENSG00000041988",
-        "ENSG00000042062",
         "ENSG00000042088",
         "ENSG00000042781",
         "ENSG00000042832",
         "ENSG00000042980",
-        "ENSG00000043514",
         "ENSG00000044524",
         "ENSG00000044574",
         "ENSG00000046647",
@@ -170,7 +160,6 @@
         "ENSG00000054690",
         "ENSG00000054967",
         "ENSG00000055118",
-        "ENSG00000055147",
         "ENSG00000055163",
         "ENSG00000055732",
         "ENSG00000056558",
@@ -194,7 +183,7 @@
         "ENSG00000063761",
         "ENSG00000063854",
         "ENSG00000064042",
-        "ENSG00000064300",
+        "ENSG00000064201",
         "ENSG00000064419",
         "ENSG00000064490",
         "ENSG00000064547",
@@ -205,10 +194,12 @@
         "ENSG00000064763",
         "ENSG00000065057",
         "ENSG00000065268",
+        "ENSG00000065320",
         "ENSG00000065413",
         "ENSG00000065485",
         "ENSG00000065600",
         "ENSG00000065609",
+        "ENSG00000065618",
         "ENSG00000065911",
         "ENSG00000065970",
         "ENSG00000066032",
@@ -245,7 +236,6 @@
         "ENSG00000072422",
         "ENSG00000072506",
         "ENSG00000072682",
-        "ENSG00000072832",
         "ENSG00000072849",
         "ENSG00000072952",
         "ENSG00000072954",
@@ -282,7 +272,6 @@
         "ENSG00000077935",
         "ENSG00000078053",
         "ENSG00000078295",
-        "ENSG00000078401",
         "ENSG00000078549",
         "ENSG00000078668",
         "ENSG00000078725",
@@ -295,14 +284,13 @@
         "ENSG00000080031",
         "ENSG00000080166",
         "ENSG00000080293",
+        "ENSG00000080819",
         "ENSG00000080824",
         "ENSG00000080839",
         "ENSG00000081041",
         "ENSG00000081760",
-        "ENSG00000081818",
         "ENSG00000082074",
         "ENSG00000082196",
-        "ENSG00000082497",
         "ENSG00000082512",
         "ENSG00000082515",
         "ENSG00000082516",
@@ -337,7 +325,6 @@
         "ENSG00000087086",
         "ENSG00000087111",
         "ENSG00000087191",
-        "ENSG00000087266",
         "ENSG00000087302",
         "ENSG00000087494",
         "ENSG00000087502",
@@ -361,7 +348,7 @@
         "ENSG00000089472",
         "ENSG00000089486",
         "ENSG00000089820",
-        "ENSG00000089916",
+        "ENSG00000089847",
         "ENSG00000090104",
         "ENSG00000090263",
         "ENSG00000090266",
@@ -387,6 +374,7 @@
         "ENSG00000092098",
         "ENSG00000092200",
         "ENSG00000092295",
+        "ENSG00000092529",
         "ENSG00000092607",
         "ENSG00000092841",
         "ENSG00000092853",
@@ -456,7 +444,6 @@
         "ENSG00000100387",
         "ENSG00000100413",
         "ENSG00000100416",
-        "ENSG00000100473",
         "ENSG00000100483",
         "ENSG00000100503",
         "ENSG00000100505",
@@ -472,12 +459,10 @@
         "ENSG00000100629",
         "ENSG00000100644",
         "ENSG00000100744",
-        "ENSG00000100749",
         "ENSG00000100802",
         "ENSG00000100804",
         "ENSG00000100814",
         "ENSG00000100823",
-        "ENSG00000100852",
         "ENSG00000100889",
         "ENSG00000100906",
         "ENSG00000100911",
@@ -531,6 +516,7 @@
         "ENSG00000102144",
         "ENSG00000102172",
         "ENSG00000102174",
+        "ENSG00000102239",
         "ENSG00000102265",
         "ENSG00000102287",
         "ENSG00000102312",
@@ -556,6 +542,7 @@
         "ENSG00000102974",
         "ENSG00000102978",
         "ENSG00000102981",
+        "ENSG00000103021",
         "ENSG00000103034",
         "ENSG00000103035",
         "ENSG00000103042",
@@ -613,7 +600,6 @@
         "ENSG00000104823",
         "ENSG00000104872",
         "ENSG00000104886",
-        "ENSG00000104894",
         "ENSG00000104901",
         "ENSG00000104904",
         "ENSG00000104907",
@@ -654,7 +640,6 @@
         "ENSG00000105880",
         "ENSG00000105928",
         "ENSG00000105963",
-        "ENSG00000106004",
         "ENSG00000106012",
         "ENSG00000106013",
         "ENSG00000106077",
@@ -665,7 +650,6 @@
         "ENSG00000106278",
         "ENSG00000106327",
         "ENSG00000106328",
-        "ENSG00000106346",
         "ENSG00000106404",
         "ENSG00000106477",
         "ENSG00000106483",
@@ -697,14 +681,15 @@
         "ENSG00000107937",
         "ENSG00000107968",
         "ENSG00000108010",
-        "ENSG00000108018",
         "ENSG00000108064",
         "ENSG00000108179",
         "ENSG00000108239",
+        "ENSG00000108342",
         "ENSG00000108379",
         "ENSG00000108381",
         "ENSG00000108387",
         "ENSG00000108405",
+        "ENSG00000108448",
         "ENSG00000108518",
         "ENSG00000108528",
         "ENSG00000108561",
@@ -715,7 +700,6 @@
         "ENSG00000108700",
         "ENSG00000108733",
         "ENSG00000108771",
-        "ENSG00000108788",
         "ENSG00000108798",
         "ENSG00000108823",
         "ENSG00000108826",
@@ -733,7 +717,6 @@
         "ENSG00000109576",
         "ENSG00000109743",
         "ENSG00000109832",
-        "ENSG00000109881",
         "ENSG00000109919",
         "ENSG00000109944",
         "ENSG00000109971",
@@ -741,7 +724,6 @@
         "ENSG00000110025",
         "ENSG00000110047",
         "ENSG00000110074",
-        "ENSG00000110080",
         "ENSG00000110169",
         "ENSG00000110195",
         "ENSG00000110315",
@@ -769,6 +751,7 @@
         "ENSG00000111186",
         "ENSG00000111206",
         "ENSG00000111229",
+        "ENSG00000111254",
         "ENSG00000111271",
         "ENSG00000111335",
         "ENSG00000111348",
@@ -804,6 +787,7 @@
         "ENSG00000112130",
         "ENSG00000112139",
         "ENSG00000112186",
+        "ENSG00000112242",
         "ENSG00000112276",
         "ENSG00000112282",
         "ENSG00000112293",
@@ -814,12 +798,10 @@
         "ENSG00000112759",
         "ENSG00000112782",
         "ENSG00000112837",
-        "ENSG00000112852",
         "ENSG00000112877",
         "ENSG00000112972",
         "ENSG00000113119",
         "ENSG00000113141",
-        "ENSG00000113212",
         "ENSG00000113231",
         "ENSG00000113263",
         "ENSG00000113296",
@@ -846,7 +828,6 @@
         "ENSG00000114770",
         "ENSG00000114841",
         "ENSG00000114854",
-        "ENSG00000114859",
         "ENSG00000114956",
         "ENSG00000115042",
         "ENSG00000115107",
@@ -861,10 +842,8 @@
         "ENSG00000115267",
         "ENSG00000115318",
         "ENSG00000115325",
-        "ENSG00000115419",
         "ENSG00000115425",
         "ENSG00000115474",
-        "ENSG00000115484",
         "ENSG00000115523",
         "ENSG00000115539",
         "ENSG00000115548",
@@ -890,7 +869,6 @@
         "ENSG00000116337",
         "ENSG00000116353",
         "ENSG00000116455",
-        "ENSG00000116525",
         "ENSG00000116584",
         "ENSG00000116586",
         "ENSG00000116661",
@@ -906,10 +884,10 @@
         "ENSG00000116863",
         "ENSG00000116885",
         "ENSG00000116898",
+        "ENSG00000116922",
         "ENSG00000116981",
         "ENSG00000116983",
         "ENSG00000117010",
-        "ENSG00000117013",
         "ENSG00000117016",
         "ENSG00000117091",
         "ENSG00000117118",
@@ -927,13 +905,13 @@
         "ENSG00000117411",
         "ENSG00000117480",
         "ENSG00000117519",
+        "ENSG00000117525",
         "ENSG00000117543",
         "ENSG00000117595",
         "ENSG00000117597",
         "ENSG00000117632",
         "ENSG00000117676",
         "ENSG00000117748",
-        "ENSG00000117877",
         "ENSG00000117971",
         "ENSG00000118096",
         "ENSG00000118156",
@@ -983,15 +961,12 @@
         "ENSG00000119917",
         "ENSG00000119922",
         "ENSG00000119946",
-        "ENSG00000119965",
         "ENSG00000119986",
         "ENSG00000120051",
         "ENSG00000120156",
         "ENSG00000120158",
         "ENSG00000120217",
         "ENSG00000120251",
-        "ENSG00000120314",
-        "ENSG00000120324",
         "ENSG00000120334",
         "ENSG00000120370",
         "ENSG00000120437",
@@ -1031,6 +1006,7 @@
         "ENSG00000122386",
         "ENSG00000122417",
         "ENSG00000122512",
+        "ENSG00000122584",
         "ENSG00000122592",
         "ENSG00000122644",
         "ENSG00000122679",
@@ -1042,7 +1018,6 @@
         "ENSG00000123136",
         "ENSG00000123146",
         "ENSG00000123178",
-        "ENSG00000123191",
         "ENSG00000123338",
         "ENSG00000123416",
         "ENSG00000123453",
@@ -1057,9 +1032,7 @@
         "ENSG00000123810",
         "ENSG00000123892",
         "ENSG00000123975",
-        "ENSG00000123999",
         "ENSG00000124091",
-        "ENSG00000124160",
         "ENSG00000124191",
         "ENSG00000124194",
         "ENSG00000124205",
@@ -1067,6 +1040,7 @@
         "ENSG00000124226",
         "ENSG00000124249",
         "ENSG00000124253",
+        "ENSG00000124279",
         "ENSG00000124302",
         "ENSG00000124357",
         "ENSG00000124444",
@@ -1105,7 +1079,6 @@
         "ENSG00000125656",
         "ENSG00000125675",
         "ENSG00000125703",
-        "ENSG00000125743",
         "ENSG00000125775",
         "ENSG00000125787",
         "ENSG00000125810",
@@ -1130,6 +1103,7 @@
         "ENSG00000126733",
         "ENSG00000126787",
         "ENSG00000126790",
+        "ENSG00000126860",
         "ENSG00000126882",
         "ENSG00000126970",
         "ENSG00000127084",
@@ -1147,13 +1121,11 @@
         "ENSG00000127903",
         "ENSG00000127952",
         "ENSG00000127954",
-        "ENSG00000128000",
         "ENSG00000128011",
         "ENSG00000128039",
         "ENSG00000128040",
         "ENSG00000128050",
         "ENSG00000128052",
-        "ENSG00000128185",
         "ENSG00000128228",
         "ENSG00000128268",
         "ENSG00000128284",
@@ -1206,7 +1178,6 @@
         "ENSG00000130305",
         "ENSG00000130307",
         "ENSG00000130347",
-        "ENSG00000130348",
         "ENSG00000130520",
         "ENSG00000130528",
         "ENSG00000130558",
@@ -1246,7 +1217,7 @@
         "ENSG00000131373",
         "ENSG00000131435",
         "ENSG00000131462",
-        "ENSG00000131507",
+        "ENSG00000131480",
         "ENSG00000131591",
         "ENSG00000131620",
         "ENSG00000131634",
@@ -1258,12 +1229,12 @@
         "ENSG00000131771",
         "ENSG00000131828",
         "ENSG00000131876",
-        "ENSG00000131931",
         "ENSG00000131941",
         "ENSG00000131944",
         "ENSG00000131969",
         "ENSG00000132000",
         "ENSG00000132004",
+        "ENSG00000132016",
         "ENSG00000132031",
         "ENSG00000132109",
         "ENSG00000132170",
@@ -1274,7 +1245,6 @@
         "ENSG00000132341",
         "ENSG00000132437",
         "ENSG00000132463",
-        "ENSG00000132465",
         "ENSG00000132470",
         "ENSG00000132475",
         "ENSG00000132481",
@@ -1307,7 +1277,6 @@
         "ENSG00000133597",
         "ENSG00000133619",
         "ENSG00000133710",
-        "ENSG00000133742",
         "ENSG00000133800",
         "ENSG00000133895",
         "ENSG00000133943",
@@ -1324,7 +1293,6 @@
         "ENSG00000134207",
         "ENSG00000134222",
         "ENSG00000134243",
-        "ENSG00000134285",
         "ENSG00000134291",
         "ENSG00000134317",
         "ENSG00000134326",
@@ -1370,6 +1338,7 @@
         "ENSG00000135314",
         "ENSG00000135324",
         "ENSG00000135362",
+        "ENSG00000135373",
         "ENSG00000135378",
         "ENSG00000135404",
         "ENSG00000135406",
@@ -1378,7 +1347,6 @@
         "ENSG00000135436",
         "ENSG00000135439",
         "ENSG00000135451",
-        "ENSG00000135452",
         "ENSG00000135454",
         "ENSG00000135469",
         "ENSG00000135472",
@@ -1418,7 +1386,6 @@
         "ENSG00000136206",
         "ENSG00000136238",
         "ENSG00000136244",
-        "ENSG00000136247",
         "ENSG00000136250",
         "ENSG00000136267",
         "ENSG00000136271",
@@ -1451,7 +1418,6 @@
         "ENSG00000136960",
         "ENSG00000136999",
         "ENSG00000137070",
-        "ENSG00000137077",
         "ENSG00000137098",
         "ENSG00000137103",
         "ENSG00000137135",
@@ -1545,7 +1511,6 @@
         "ENSG00000139508",
         "ENSG00000139531",
         "ENSG00000139549",
-        "ENSG00000139567",
         "ENSG00000139618",
         "ENSG00000139624",
         "ENSG00000139629",
@@ -1563,7 +1528,6 @@
         "ENSG00000140104",
         "ENSG00000140254",
         "ENSG00000140259",
-        "ENSG00000140280",
         "ENSG00000140297",
         "ENSG00000140319",
         "ENSG00000140365",
@@ -1586,14 +1550,13 @@
         "ENSG00000140939",
         "ENSG00000140961",
         "ENSG00000140983",
-        "ENSG00000140988",
         "ENSG00000140990",
         "ENSG00000141026",
-        "ENSG00000141034",
         "ENSG00000141040",
         "ENSG00000141084",
         "ENSG00000141098",
         "ENSG00000141179",
+        "ENSG00000141219",
         "ENSG00000141378",
         "ENSG00000141391",
         "ENSG00000141401",
@@ -1601,6 +1564,7 @@
         "ENSG00000141469",
         "ENSG00000141499",
         "ENSG00000141505",
+        "ENSG00000141519",
         "ENSG00000141543",
         "ENSG00000141552",
         "ENSG00000141574",
@@ -1611,7 +1575,6 @@
         "ENSG00000141744",
         "ENSG00000141759",
         "ENSG00000141837",
-        "ENSG00000141854",
         "ENSG00000141934",
         "ENSG00000141956",
         "ENSG00000141968",
@@ -1632,8 +1595,8 @@
         "ENSG00000142748",
         "ENSG00000142751",
         "ENSG00000142871",
-        "ENSG00000142920",
         "ENSG00000142945",
+        "ENSG00000142959",
         "ENSG00000142973",
         "ENSG00000143033",
         "ENSG00000143067",
@@ -1657,7 +1620,6 @@
         "ENSG00000143314",
         "ENSG00000143322",
         "ENSG00000143355",
-        "ENSG00000143369",
         "ENSG00000143374",
         "ENSG00000143375",
         "ENSG00000143387",
@@ -1679,11 +1641,8 @@
         "ENSG00000143653",
         "ENSG00000143768",
         "ENSG00000143774",
-        "ENSG00000143786",
-        "ENSG00000143793",
         "ENSG00000143799",
         "ENSG00000143839",
-        "ENSG00000143847",
         "ENSG00000143850",
         "ENSG00000143869",
         "ENSG00000143870",
@@ -1799,9 +1758,7 @@
         "ENSG00000148225",
         "ENSG00000148335",
         "ENSG00000148344",
-        "ENSG00000148396",
         "ENSG00000148399",
-        "ENSG00000148411",
         "ENSG00000148459",
         "ENSG00000148481",
         "ENSG00000148773",
@@ -1815,7 +1772,6 @@
         "ENSG00000149090",
         "ENSG00000149201",
         "ENSG00000149243",
-        "ENSG00000149273",
         "ENSG00000149328",
         "ENSG00000149380",
         "ENSG00000149403",
@@ -1834,7 +1790,6 @@
         "ENSG00000150275",
         "ENSG00000150316",
         "ENSG00000150510",
-        "ENSG00000150551",
         "ENSG00000150627",
         "ENSG00000150636",
         "ENSG00000150687",
@@ -1877,7 +1832,6 @@
         "ENSG00000152467",
         "ENSG00000152475",
         "ENSG00000152495",
-        "ENSG00000152582",
         "ENSG00000152661",
         "ENSG00000152669",
         "ENSG00000152684",
@@ -1950,9 +1904,9 @@
         "ENSG00000155980",
         "ENSG00000156017",
         "ENSG00000156076",
-        "ENSG00000156110",
         "ENSG00000156127",
         "ENSG00000156171",
+        "ENSG00000156172",
         "ENSG00000156218",
         "ENSG00000156219",
         "ENSG00000156261",
@@ -1969,7 +1923,6 @@
         "ENSG00000156509",
         "ENSG00000156521",
         "ENSG00000156587",
-        "ENSG00000156675",
         "ENSG00000156711",
         "ENSG00000156735",
         "ENSG00000156853",
@@ -2009,7 +1962,6 @@
         "ENSG00000158079",
         "ENSG00000158089",
         "ENSG00000158156",
-        "ENSG00000158169",
         "ENSG00000158246",
         "ENSG00000158286",
         "ENSG00000158402",
@@ -2019,7 +1971,6 @@
         "ENSG00000158711",
         "ENSG00000158764",
         "ENSG00000158793",
-        "ENSG00000158796",
         "ENSG00000158806",
         "ENSG00000158825",
         "ENSG00000158856",
@@ -2041,6 +1992,7 @@
         "ENSG00000159352",
         "ENSG00000159363",
         "ENSG00000159377",
+        "ENSG00000159450",
         "ENSG00000159479",
         "ENSG00000159640",
         "ENSG00000159685",
@@ -2080,9 +2032,6 @@
         "ENSG00000160808",
         "ENSG00000160862",
         "ENSG00000160949",
-        "ENSG00000160959",
-        "ENSG00000160991",
-        "ENSG00000160993",
         "ENSG00000161036",
         "ENSG00000161040",
         "ENSG00000161057",
@@ -2106,6 +2055,7 @@
         "ENSG00000162063",
         "ENSG00000162066",
         "ENSG00000162105",
+        "ENSG00000162148",
         "ENSG00000162174",
         "ENSG00000162194",
         "ENSG00000162241",
@@ -2125,7 +2075,6 @@
         "ENSG00000162517",
         "ENSG00000162543",
         "ENSG00000162572",
-        "ENSG00000162591",
         "ENSG00000162620",
         "ENSG00000162639",
         "ENSG00000162650",
@@ -2144,9 +2093,7 @@
         "ENSG00000163032",
         "ENSG00000163040",
         "ENSG00000163069",
-        "ENSG00000163071",
         "ENSG00000163072",
-        "ENSG00000163082",
         "ENSG00000163083",
         "ENSG00000163106",
         "ENSG00000163131",
@@ -2158,6 +2105,7 @@
         "ENSG00000163273",
         "ENSG00000163293",
         "ENSG00000163354",
+        "ENSG00000163377",
         "ENSG00000163382",
         "ENSG00000163393",
         "ENSG00000163406",
@@ -2220,9 +2168,8 @@
         "ENSG00000164068",
         "ENSG00000164077",
         "ENSG00000164087",
-        "ENSG00000164104",
         "ENSG00000164109",
-        "ENSG00000164117",
+        "ENSG00000164123",
         "ENSG00000164128",
         "ENSG00000164199",
         "ENSG00000164241",
@@ -2277,6 +2224,7 @@
         "ENSG00000165140",
         "ENSG00000165152",
         "ENSG00000165168",
+        "ENSG00000165197",
         "ENSG00000165269",
         "ENSG00000165271",
         "ENSG00000165272",
@@ -2303,13 +2251,10 @@
         "ENSG00000165672",
         "ENSG00000165675",
         "ENSG00000165714",
-        "ENSG00000165716",
         "ENSG00000165730",
         "ENSG00000165757",
         "ENSG00000165782",
-        "ENSG00000165810",
         "ENSG00000165816",
-        "ENSG00000165899",
         "ENSG00000165905",
         "ENSG00000165916",
         "ENSG00000165923",
@@ -2317,7 +2262,6 @@
         "ENSG00000165973",
         "ENSG00000165983",
         "ENSG00000165996",
-        "ENSG00000166002",
         "ENSG00000166033",
         "ENSG00000166073",
         "ENSG00000166091",
@@ -2328,7 +2272,6 @@
         "ENSG00000166173",
         "ENSG00000166183",
         "ENSG00000166199",
-        "ENSG00000166224",
         "ENSG00000166226",
         "ENSG00000166261",
         "ENSG00000166265",
@@ -2339,6 +2282,7 @@
         "ENSG00000166415",
         "ENSG00000166436",
         "ENSG00000166448",
+        "ENSG00000166450",
         "ENSG00000166451",
         "ENSG00000166452",
         "ENSG00000166508",
@@ -2359,10 +2303,7 @@
         "ENSG00000166797",
         "ENSG00000166800",
         "ENSG00000166803",
-        "ENSG00000166816",
         "ENSG00000166851",
-        "ENSG00000166896",
-        "ENSG00000166900",
         "ENSG00000166902",
         "ENSG00000166913",
         "ENSG00000166917",
@@ -2375,7 +2316,6 @@
         "ENSG00000167065",
         "ENSG00000167077",
         "ENSG00000167085",
-        "ENSG00000167088",
         "ENSG00000167105",
         "ENSG00000167106",
         "ENSG00000167112",
@@ -2420,7 +2360,7 @@
         "ENSG00000167840",
         "ENSG00000167842",
         "ENSG00000167861",
-        "ENSG00000167862",
+        "ENSG00000167895",
         "ENSG00000167912",
         "ENSG00000167920",
         "ENSG00000167977",
@@ -2453,6 +2393,7 @@
         "ENSG00000168404",
         "ENSG00000168421",
         "ENSG00000168453",
+        "ENSG00000168476",
         "ENSG00000168490",
         "ENSG00000168491",
         "ENSG00000168495",
@@ -2470,6 +2411,7 @@
         "ENSG00000168806",
         "ENSG00000168824",
         "ENSG00000168826",
+        "ENSG00000168830",
         "ENSG00000168876",
         "ENSG00000168884",
         "ENSG00000168894",
@@ -2493,8 +2435,6 @@
         "ENSG00000169291",
         "ENSG00000169297",
         "ENSG00000169299",
-        "ENSG00000169371",
-        "ENSG00000169403",
         "ENSG00000169429",
         "ENSG00000169435",
         "ENSG00000169436",
@@ -2508,11 +2448,9 @@
         "ENSG00000169851",
         "ENSG00000169908",
         "ENSG00000169914",
-        "ENSG00000169919",
         "ENSG00000169972",
         "ENSG00000169976",
         "ENSG00000169992",
-        "ENSG00000170037",
         "ENSG00000170049",
         "ENSG00000170088",
         "ENSG00000170092",
@@ -2534,6 +2472,7 @@
         "ENSG00000170325",
         "ENSG00000170345",
         "ENSG00000170348",
+        "ENSG00000170382",
         "ENSG00000170417",
         "ENSG00000170421",
         "ENSG00000170430",
@@ -2548,7 +2487,9 @@
         "ENSG00000170743",
         "ENSG00000170745",
         "ENSG00000170779",
+        "ENSG00000170820",
         "ENSG00000170837",
+        "ENSG00000170846",
         "ENSG00000170855",
         "ENSG00000170871",
         "ENSG00000170890",
@@ -2576,6 +2517,7 @@
         "ENSG00000171453",
         "ENSG00000171462",
         "ENSG00000171476",
+        "ENSG00000171495",
         "ENSG00000171509",
         "ENSG00000171517",
         "ENSG00000171522",
@@ -2635,6 +2577,7 @@
         "ENSG00000172936",
         "ENSG00000172987",
         "ENSG00000172992",
+        "ENSG00000173013",
         "ENSG00000173083",
         "ENSG00000173085",
         "ENSG00000173110",
@@ -2648,10 +2591,8 @@
         "ENSG00000173406",
         "ENSG00000173421",
         "ENSG00000173456",
-        "ENSG00000173480",
         "ENSG00000173531",
         "ENSG00000173540",
-        "ENSG00000173546",
         "ENSG00000173588",
         "ENSG00000173692",
         "ENSG00000173762",
@@ -2662,6 +2603,7 @@
         "ENSG00000173898",
         "ENSG00000173914",
         "ENSG00000173928",
+        "ENSG00000173947",
         "ENSG00000174007",
         "ENSG00000174059",
         "ENSG00000174109",
@@ -2679,7 +2621,6 @@
         "ENSG00000174469",
         "ENSG00000174483",
         "ENSG00000174514",
-        "ENSG00000174516",
         "ENSG00000174527",
         "ENSG00000174529",
         "ENSG00000174547",
@@ -2688,7 +2629,6 @@
         "ENSG00000174652",
         "ENSG00000174740",
         "ENSG00000174791",
-        "ENSG00000174808",
         "ENSG00000174898",
         "ENSG00000174996",
         "ENSG00000175003",
@@ -2713,15 +2653,12 @@
         "ENSG00000175390",
         "ENSG00000175445",
         "ENSG00000175449",
-        "ENSG00000175471",
         "ENSG00000175518",
         "ENSG00000175567",
         "ENSG00000175575",
         "ENSG00000175581",
-        "ENSG00000175611",
         "ENSG00000175691",
         "ENSG00000175711",
-        "ENSG00000175779",
         "ENSG00000175785",
         "ENSG00000175792",
         "ENSG00000176024",
@@ -2746,7 +2683,6 @@
         "ENSG00000176732",
         "ENSG00000176749",
         "ENSG00000176890",
-        "ENSG00000176894",
         "ENSG00000176907",
         "ENSG00000176928",
         "ENSG00000176971",
@@ -2768,8 +2704,6 @@
         "ENSG00000177459",
         "ENSG00000177464",
         "ENSG00000177519",
-        "ENSG00000177570",
-        "ENSG00000177628",
         "ENSG00000177640",
         "ENSG00000177674",
         "ENSG00000177685",
@@ -2784,6 +2718,7 @@
         "ENSG00000177943",
         "ENSG00000177946",
         "ENSG00000177971",
+        "ENSG00000177989",
         "ENSG00000177993",
         "ENSG00000178026",
         "ENSG00000178028",
@@ -2801,7 +2736,6 @@
         "ENSG00000178409",
         "ENSG00000178460",
         "ENSG00000178537",
-        "ENSG00000178719",
         "ENSG00000178726",
         "ENSG00000178741",
         "ENSG00000178809",
@@ -2818,6 +2752,7 @@
         "ENSG00000178999",
         "ENSG00000179051",
         "ENSG00000179071",
+        "ENSG00000179082",
         "ENSG00000179083",
         "ENSG00000179088",
         "ENSG00000179091",
@@ -2845,7 +2780,6 @@
         "ENSG00000179772",
         "ENSG00000179776",
         "ENSG00000179796",
-        "ENSG00000179859",
         "ENSG00000179886",
         "ENSG00000179914",
         "ENSG00000179918",
@@ -2880,7 +2814,6 @@
         "ENSG00000180801",
         "ENSG00000180817",
         "ENSG00000180855",
-        "ENSG00000180875",
         "ENSG00000180879",
         "ENSG00000180938",
         "ENSG00000180992",
@@ -2888,11 +2821,11 @@
         "ENSG00000181019",
         "ENSG00000181045",
         "ENSG00000181135",
+        "ENSG00000181143",
         "ENSG00000181215",
         "ENSG00000181220",
         "ENSG00000181234",
         "ENSG00000181333",
-        "ENSG00000181381",
         "ENSG00000181444",
         "ENSG00000181458",
         "ENSG00000181467",
@@ -2904,11 +2837,9 @@
         "ENSG00000181847",
         "ENSG00000181873",
         "ENSG00000181885",
-        "ENSG00000181982",
         "ENSG00000181991",
         "ENSG00000182004",
         "ENSG00000182010",
-        "ENSG00000182013",
         "ENSG00000182054",
         "ENSG00000182117",
         "ENSG00000182118",
@@ -2922,14 +2853,12 @@
         "ENSG00000182256",
         "ENSG00000182257",
         "ENSG00000182318",
-        "ENSG00000182325",
         "ENSG00000182329",
         "ENSG00000182405",
         "ENSG00000182481",
-        "ENSG00000182504",
         "ENSG00000182511",
+        "ENSG00000182521",
         "ENSG00000182534",
-        "ENSG00000182544",
         "ENSG00000182578",
         "ENSG00000182586",
         "ENSG00000182612",
@@ -2938,10 +2867,10 @@
         "ENSG00000182718",
         "ENSG00000182810",
         "ENSG00000182870",
-        "ENSG00000182873",
         "ENSG00000182901",
         "ENSG00000182902",
         "ENSG00000182903",
+        "ENSG00000182950",
         "ENSG00000182986",
         "ENSG00000182993",
         "ENSG00000183010",
@@ -2956,6 +2885,7 @@
         "ENSG00000183273",
         "ENSG00000183309",
         "ENSG00000183323",
+        "ENSG00000183324",
         "ENSG00000183431",
         "ENSG00000183454",
         "ENSG00000183484",
@@ -2978,7 +2908,6 @@
         "ENSG00000184060",
         "ENSG00000184068",
         "ENSG00000184113",
-        "ENSG00000184162",
         "ENSG00000184164",
         "ENSG00000184220",
         "ENSG00000184313",
@@ -3021,7 +2950,6 @@
         "ENSG00000185252",
         "ENSG00000185271",
         "ENSG00000185339",
-        "ENSG00000185347",
         "ENSG00000185361",
         "ENSG00000185379",
         "ENSG00000185467",
@@ -3050,7 +2978,6 @@
         "ENSG00000186019",
         "ENSG00000186026",
         "ENSG00000186104",
-        "ENSG00000186166",
         "ENSG00000186197",
         "ENSG00000186198",
         "ENSG00000186204",
@@ -3068,7 +2995,6 @@
         "ENSG00000186453",
         "ENSG00000186472",
         "ENSG00000186487",
-        "ENSG00000186496",
         "ENSG00000186517",
         "ENSG00000186564",
         "ENSG00000186628",
@@ -3076,18 +3002,17 @@
         "ENSG00000186642",
         "ENSG00000186665",
         "ENSG00000186666",
-        "ENSG00000186687",
         "ENSG00000186716",
         "ENSG00000186787",
         "ENSG00000186792",
         "ENSG00000186806",
         "ENSG00000186814",
         "ENSG00000186854",
-        "ENSG00000186862",
         "ENSG00000186871",
         "ENSG00000187013",
         "ENSG00000187049",
         "ENSG00000187091",
+        "ENSG00000187123",
         "ENSG00000187134",
         "ENSG00000187231",
         "ENSG00000187239",
@@ -3099,7 +3024,6 @@
         "ENSG00000187531",
         "ENSG00000187546",
         "ENSG00000187608",
-        "ENSG00000187626",
         "ENSG00000187634",
         "ENSG00000187650",
         "ENSG00000187688",
@@ -3119,7 +3043,6 @@
         "ENSG00000188112",
         "ENSG00000188130",
         "ENSG00000188176",
-        "ENSG00000188211",
         "ENSG00000188215",
         "ENSG00000188257",
         "ENSG00000188295",
@@ -3129,7 +3052,6 @@
         "ENSG00000188372",
         "ENSG00000188488",
         "ENSG00000188511",
-        "ENSG00000188522",
         "ENSG00000188523",
         "ENSG00000188536",
         "ENSG00000188549",
@@ -3148,10 +3070,10 @@
         "ENSG00000188886",
         "ENSG00000188916",
         "ENSG00000188958",
+        "ENSG00000188993",
         "ENSG00000188997",
         "ENSG00000189007",
         "ENSG00000189046",
-        "ENSG00000189057",
         "ENSG00000189077",
         "ENSG00000189114",
         "ENSG00000189157",
@@ -3168,10 +3090,8 @@
         "ENSG00000189420",
         "ENSG00000196092",
         "ENSG00000196110",
-        "ENSG00000196126",
         "ENSG00000196150",
         "ENSG00000196152",
-        "ENSG00000196155",
         "ENSG00000196167",
         "ENSG00000196189",
         "ENSG00000196214",
@@ -3191,8 +3111,6 @@
         "ENSG00000196482",
         "ENSG00000196503",
         "ENSG00000196510",
-        "ENSG00000196517",
-        "ENSG00000196544",
         "ENSG00000196549",
         "ENSG00000196581",
         "ENSG00000196616",
@@ -3205,7 +3123,6 @@
         "ENSG00000196735",
         "ENSG00000196754",
         "ENSG00000196782",
-        "ENSG00000196793",
         "ENSG00000196812",
         "ENSG00000196839",
         "ENSG00000196860",
@@ -3226,7 +3143,6 @@
         "ENSG00000197150",
         "ENSG00000197153",
         "ENSG00000197168",
-        "ENSG00000197279",
         "ENSG00000197296",
         "ENSG00000197345",
         "ENSG00000197355",
@@ -3240,6 +3156,7 @@
         "ENSG00000197467",
         "ENSG00000197497",
         "ENSG00000197548",
+        "ENSG00000197557",
         "ENSG00000197565",
         "ENSG00000197580",
         "ENSG00000197599",
@@ -3252,8 +3169,6 @@
         "ENSG00000197857",
         "ENSG00000197889",
         "ENSG00000197933",
-        "ENSG00000197935",
-        "ENSG00000197951",
         "ENSG00000197977",
         "ENSG00000198003",
         "ENSG00000198010",
@@ -3274,10 +3189,8 @@
         "ENSG00000198373",
         "ENSG00000198382",
         "ENSG00000198417",
-        "ENSG00000198466",
         "ENSG00000198468",
         "ENSG00000198515",
-        "ENSG00000198522",
         "ENSG00000198542",
         "ENSG00000198576",
         "ENSG00000198598",
@@ -3289,6 +3202,7 @@
         "ENSG00000198719",
         "ENSG00000198727",
         "ENSG00000198729",
+        "ENSG00000198734",
         "ENSG00000198746",
         "ENSG00000198756",
         "ENSG00000198759",
@@ -3304,10 +3218,9 @@
         "ENSG00000198821",
         "ENSG00000198826",
         "ENSG00000198830",
-        "ENSG00000198848",
         "ENSG00000198855",
-        "ENSG00000198870",
         "ENSG00000198886",
+        "ENSG00000198889",
         "ENSG00000198899",
         "ENSG00000198901",
         "ENSG00000198924",
@@ -3316,13 +3229,13 @@
         "ENSG00000198938",
         "ENSG00000198939",
         "ENSG00000198959",
+        "ENSG00000203326",
         "ENSG00000203356",
         "ENSG00000203585",
         "ENSG00000203685",
         "ENSG00000203711",
         "ENSG00000203722",
         "ENSG00000203734",
-        "ENSG00000203739",
         "ENSG00000203760",
         "ENSG00000203808",
         "ENSG00000203872",
@@ -3334,7 +3247,6 @@
         "ENSG00000204149",
         "ENSG00000204161",
         "ENSG00000204219",
-        "ENSG00000204228",
         "ENSG00000204252",
         "ENSG00000204257",
         "ENSG00000204287",
@@ -3345,8 +3257,8 @@
         "ENSG00000204334",
         "ENSG00000204348",
         "ENSG00000204380",
-        "ENSG00000204385",
         "ENSG00000204390",
+        "ENSG00000204540",
         "ENSG00000204564",
         "ENSG00000204611",
         "ENSG00000204618",
@@ -3355,13 +3267,14 @@
         "ENSG00000204642",
         "ENSG00000204682",
         "ENSG00000204713",
-        "ENSG00000204839",
+        "ENSG00000204851",
         "ENSG00000204882",
         "ENSG00000204920",
         "ENSG00000204934",
         "ENSG00000204977",
         "ENSG00000205038",
         "ENSG00000205106",
+        "ENSG00000205129",
         "ENSG00000205221",
         "ENSG00000205309",
         "ENSG00000205334",
@@ -3370,9 +3283,9 @@
         "ENSG00000205464",
         "ENSG00000205542",
         "ENSG00000205559",
-        "ENSG00000205562",
         "ENSG00000205592",
         "ENSG00000205593",
+        "ENSG00000205622",
         "ENSG00000205629",
         "ENSG00000205639",
         "ENSG00000205643",
@@ -3380,37 +3293,30 @@
         "ENSG00000205853",
         "ENSG00000205913",
         "ENSG00000206052",
-        "ENSG00000206140",
         "ENSG00000206172",
         "ENSG00000206190",
         "ENSG00000206432",
         "ENSG00000206535",
         "ENSG00000206561",
+        "ENSG00000206567",
         "ENSG00000206573",
         "ENSG00000211445",
-        "ENSG00000211679",
         "ENSG00000212123",
         "ENSG00000212694",
         "ENSG00000212907",
         "ENSG00000212916",
-        "ENSG00000213085",
         "ENSG00000213088",
-        "ENSG00000213185",
         "ENSG00000213186",
         "ENSG00000213190",
         "ENSG00000213203",
         "ENSG00000213337",
         "ENSG00000213347",
-        "ENSG00000213462",
         "ENSG00000213468",
         "ENSG00000213523",
         "ENSG00000213533",
         "ENSG00000213551",
-        "ENSG00000213588",
         "ENSG00000213619",
         "ENSG00000213638",
-        "ENSG00000213719",
-        "ENSG00000213760",
         "ENSG00000213780",
         "ENSG00000213799",
         "ENSG00000213906",
@@ -3426,6 +3332,7 @@
         "ENSG00000214290",
         "ENSG00000214309",
         "ENSG00000214401",
+        "ENSG00000214435",
         "ENSG00000214706",
         "ENSG00000214866",
         "ENSG00000214870",
@@ -3449,19 +3356,19 @@
         "ENSG00000219607",
         "ENSG00000221818",
         "ENSG00000221838",
+        "ENSG00000221843",
         "ENSG00000221886",
         "ENSG00000221949",
         "ENSG00000221955",
-        "ENSG00000221994",
         "ENSG00000222005",
         "ENSG00000222020",
+        "ENSG00000222032",
         "ENSG00000223478",
         "ENSG00000223658",
         "ENSG00000223715",
         "ENSG00000223776",
-        "ENSG00000223813",
+        "ENSG00000223797",
         "ENSG00000223855",
-        "ENSG00000223865",
         "ENSG00000224116",
         "ENSG00000224184",
         "ENSG00000224189",
@@ -3469,6 +3376,7 @@
         "ENSG00000224429",
         "ENSG00000224596",
         "ENSG00000224729",
+        "ENSG00000224746",
         "ENSG00000224790",
         "ENSG00000224843",
         "ENSG00000224982",
@@ -3487,31 +3395,33 @@
         "ENSG00000225783",
         "ENSG00000225793",
         "ENSG00000225855",
+        "ENSG00000225885",
         "ENSG00000225930",
         "ENSG00000225938",
         "ENSG00000225978",
         "ENSG00000226026",
         "ENSG00000226029",
-        "ENSG00000226091",
         "ENSG00000226124",
         "ENSG00000226137",
         "ENSG00000226320",
+        "ENSG00000226321",
         "ENSG00000226328",
+        "ENSG00000226332",
         "ENSG00000226363",
         "ENSG00000226386",
         "ENSG00000226419",
-        "ENSG00000226445",
         "ENSG00000226479",
         "ENSG00000226742",
         "ENSG00000226754",
+        "ENSG00000226756",
+        "ENSG00000226816",
+        "ENSG00000226849",
         "ENSG00000226887",
         "ENSG00000227028",
-        "ENSG00000227036",
         "ENSG00000227060",
         "ENSG00000227115",
         "ENSG00000227117",
         "ENSG00000227155",
-        "ENSG00000227210",
         "ENSG00000227256",
         "ENSG00000227268",
         "ENSG00000227354",
@@ -3521,34 +3431,36 @@
         "ENSG00000227533",
         "ENSG00000227591",
         "ENSG00000227740",
-        "ENSG00000228013",
-        "ENSG00000228060",
+        "ENSG00000227741",
         "ENSG00000228109",
+        "ENSG00000228113",
         "ENSG00000228192",
         "ENSG00000228221",
         "ENSG00000228288",
         "ENSG00000228340",
         "ENSG00000228350",
         "ENSG00000228495",
-        "ENSG00000228857",
         "ENSG00000228878",
+        "ENSG00000228925",
         "ENSG00000229043",
         "ENSG00000229111",
         "ENSG00000229127",
         "ENSG00000229140",
         "ENSG00000229205",
         "ENSG00000229214",
-        "ENSG00000229388",
-        "ENSG00000229444",
         "ENSG00000229474",
         "ENSG00000229589",
         "ENSG00000229676",
         "ENSG00000229719",
+        "ENSG00000229852",
         "ENSG00000230091",
         "ENSG00000230131",
         "ENSG00000230366",
+        "ENSG00000230393",
+        "ENSG00000230426",
+        "ENSG00000230510",
         "ENSG00000230561",
-        "ENSG00000230679",
+        "ENSG00000230615",
         "ENSG00000230844",
         "ENSG00000230910",
         "ENSG00000230923",
@@ -3558,37 +3470,40 @@
         "ENSG00000231177",
         "ENSG00000231208",
         "ENSG00000231367",
-        "ENSG00000231389",
         "ENSG00000231407",
-        "ENSG00000231439",
         "ENSG00000231690",
         "ENSG00000231770",
-        "ENSG00000231852",
+        "ENSG00000231856",
         "ENSG00000231890",
         "ENSG00000231908",
         "ENSG00000231943",
         "ENSG00000231971",
-        "ENSG00000231999",
+        "ENSG00000232063",
         "ENSG00000232310",
         "ENSG00000232352",
         "ENSG00000232434",
         "ENSG00000232645",
-        "ENSG00000232940",
+        "ENSG00000232807",
+        "ENSG00000232934",
         "ENSG00000233009",
         "ENSG00000233098",
         "ENSG00000233117",
         "ENSG00000233184",
+        "ENSG00000233230",
         "ENSG00000233334",
         "ENSG00000233436",
         "ENSG00000233452",
+        "ENSG00000233461",
         "ENSG00000233521",
         "ENSG00000233527",
         "ENSG00000233554",
+        "ENSG00000233621",
         "ENSG00000233654",
         "ENSG00000233718",
         "ENSG00000233723",
         "ENSG00000233791",
         "ENSG00000233822",
+        "ENSG00000233968",
         "ENSG00000234028",
         "ENSG00000234076",
         "ENSG00000234284",
@@ -3600,11 +3515,14 @@
         "ENSG00000234707",
         "ENSG00000234719",
         "ENSG00000234753",
+        "ENSG00000234807",
+        "ENSG00000234828",
         "ENSG00000234883",
         "ENSG00000234928",
         "ENSG00000235033",
         "ENSG00000235162",
         "ENSG00000235194",
+        "ENSG00000235236",
         "ENSG00000235280",
         "ENSG00000235530",
         "ENSG00000235560",
@@ -3620,46 +3538,51 @@
         "ENSG00000236144",
         "ENSG00000236200",
         "ENSG00000236204",
+        "ENSG00000236255",
         "ENSG00000236287",
+        "ENSG00000236393",
+        "ENSG00000236498",
+        "ENSG00000236514",
         "ENSG00000236682",
+        "ENSG00000236723",
         "ENSG00000236751",
-        "ENSG00000236782",
         "ENSG00000236790",
+        "ENSG00000236833",
         "ENSG00000236914",
         "ENSG00000237036",
         "ENSG00000237054",
-        "ENSG00000237172",
         "ENSG00000237181",
         "ENSG00000237248",
+        "ENSG00000237301",
+        "ENSG00000237461",
         "ENSG00000237491",
         "ENSG00000237512",
         "ENSG00000237515",
         "ENSG00000237649",
         "ENSG00000237753",
-        "ENSG00000237807",
         "ENSG00000237945",
         "ENSG00000237976",
         "ENSG00000237989",
         "ENSG00000238058",
         "ENSG00000238099",
-        "ENSG00000238120",
         "ENSG00000238197",
         "ENSG00000238198",
         "ENSG00000239388",
+        "ENSG00000239407",
         "ENSG00000239523",
         "ENSG00000239713",
         "ENSG00000239887",
+        "ENSG00000240032",
         "ENSG00000240038",
         "ENSG00000240057",
-        "ENSG00000240065",
         "ENSG00000240288",
+        "ENSG00000240401",
         "ENSG00000240405",
         "ENSG00000240423",
-        "ENSG00000240449",
         "ENSG00000240498",
         "ENSG00000240583",
-        "ENSG00000240790",
         "ENSG00000240859",
+        "ENSG00000240922",
         "ENSG00000241258",
         "ENSG00000241313",
         "ENSG00000241644",
@@ -3672,24 +3595,29 @@
         "ENSG00000242516",
         "ENSG00000242574",
         "ENSG00000242715",
-        "ENSG00000243144",
+        "ENSG00000243155",
         "ENSG00000243244",
         "ENSG00000243335",
         "ENSG00000243414",
         "ENSG00000243566",
-        "ENSG00000243649",
         "ENSG00000243709",
         "ENSG00000243955",
         "ENSG00000244038",
         "ENSG00000244041",
+        "ENSG00000244055",
+        "ENSG00000244094",
         "ENSG00000244219",
         "ENSG00000244265",
         "ENSG00000244405",
+        "ENSG00000244459",
         "ENSG00000244509",
         "ENSG00000244513",
         "ENSG00000244694",
         "ENSG00000244734",
         "ENSG00000244926",
+        "ENSG00000245017",
+        "ENSG00000245025",
+        "ENSG00000245059",
         "ENSG00000245105",
         "ENSG00000245149",
         "ENSG00000245213",
@@ -3710,39 +3638,42 @@
         "ENSG00000246523",
         "ENSG00000246731",
         "ENSG00000246877",
+        "ENSG00000246922",
         "ENSG00000247077",
         "ENSG00000247157",
         "ENSG00000247199",
-        "ENSG00000247287",
         "ENSG00000247317",
         "ENSG00000247400",
         "ENSG00000247626",
         "ENSG00000247708",
-        "ENSG00000247746",
         "ENSG00000247796",
+        "ENSG00000247934",
         "ENSG00000247950",
+        "ENSG00000247970",
         "ENSG00000247982",
         "ENSG00000248008",
+        "ENSG00000248144",
         "ENSG00000248464",
         "ENSG00000248483",
         "ENSG00000248485",
-        "ENSG00000248538",
+        "ENSG00000248712",
         "ENSG00000248727",
+        "ENSG00000248787",
+        "ENSG00000249069",
         "ENSG00000249307",
         "ENSG00000249375",
         "ENSG00000249464",
         "ENSG00000249494",
         "ENSG00000249599",
         "ENSG00000249637",
+        "ENSG00000249738",
         "ENSG00000249825",
         "ENSG00000249846",
         "ENSG00000249898",
-        "ENSG00000249917",
         "ENSG00000250073",
         "ENSG00000250091",
         "ENSG00000250131",
         "ENSG00000250159",
-        "ENSG00000250166",
         "ENSG00000250241",
         "ENSG00000250305",
         "ENSG00000250320",
@@ -3752,110 +3683,136 @@
         "ENSG00000250486",
         "ENSG00000250565",
         "ENSG00000250616",
-        "ENSG00000250891",
         "ENSG00000251165",
         "ENSG00000251226",
+        "ENSG00000251259",
         "ENSG00000251301",
-        "ENSG00000251307",
         "ENSG00000251323",
         "ENSG00000251363",
+        "ENSG00000251417",
         "ENSG00000251432",
         "ENSG00000251580",
         "ENSG00000251637",
+        "ENSG00000253106",
         "ENSG00000253159",
+        "ENSG00000253200",
         "ENSG00000253210",
+        "ENSG00000253392",
         "ENSG00000253404",
         "ENSG00000253438",
         "ENSG00000253457",
         "ENSG00000253535",
         "ENSG00000253552",
+        "ENSG00000253636",
         "ENSG00000253669",
         "ENSG00000253704",
         "ENSG00000253731",
         "ENSG00000253773",
+        "ENSG00000253796",
         "ENSG00000253807",
         "ENSG00000253819",
         "ENSG00000253953",
         "ENSG00000253958",
         "ENSG00000254087",
         "ENSG00000254109",
-        "ENSG00000254224",
         "ENSG00000254226",
+        "ENSG00000254288",
         "ENSG00000254333",
+        "ENSG00000254427",
         "ENSG00000254585",
         "ENSG00000254614",
         "ENSG00000254685",
         "ENSG00000254703",
         "ENSG00000254858",
         "ENSG00000254862",
+        "ENSG00000255031",
         "ENSG00000255052",
         "ENSG00000255100",
+        "ENSG00000255328",
         "ENSG00000255337",
+        "ENSG00000255346",
         "ENSG00000255418",
         "ENSG00000255529",
         "ENSG00000255561",
+        "ENSG00000255621",
         "ENSG00000255690",
         "ENSG00000255733",
         "ENSG00000255760",
         "ENSG00000255874",
-        "ENSG00000255929",
-        "ENSG00000255992",
         "ENSG00000256223",
         "ENSG00000256235",
         "ENSG00000256269",
-        "ENSG00000256802",
         "ENSG00000256806",
         "ENSG00000257017",
-        "ENSG00000257097",
         "ENSG00000257108",
         "ENSG00000257135",
+        "ENSG00000257252",
         "ENSG00000257446",
         "ENSG00000257913",
         "ENSG00000258056",
         "ENSG00000258057",
+        "ENSG00000258101",
+        "ENSG00000258232",
         "ENSG00000258405",
         "ENSG00000258484",
-        "ENSG00000258545",
         "ENSG00000258551",
         "ENSG00000258586",
         "ENSG00000258655",
         "ENSG00000258708",
         "ENSG00000258725",
+        "ENSG00000258752",
         "ENSG00000258754",
+        "ENSG00000258768",
         "ENSG00000258940",
         "ENSG00000259146",
         "ENSG00000259153",
+        "ENSG00000259182",
         "ENSG00000259291",
         "ENSG00000259330",
+        "ENSG00000259347",
+        "ENSG00000259407",
+        "ENSG00000259408",
         "ENSG00000259448",
         "ENSG00000259495",
         "ENSG00000259577",
         "ENSG00000259583",
+        "ENSG00000259617",
         "ENSG00000259863",
         "ENSG00000259867",
         "ENSG00000259943",
+        "ENSG00000260000",
         "ENSG00000260027",
+        "ENSG00000260083",
         "ENSG00000260088",
+        "ENSG00000260136",
         "ENSG00000260192",
+        "ENSG00000260196",
         "ENSG00000260219",
         "ENSG00000260236",
+        "ENSG00000260273",
+        "ENSG00000260274",
+        "ENSG00000260279",
         "ENSG00000260325",
         "ENSG00000260329",
         "ENSG00000260456",
         "ENSG00000260475",
+        "ENSG00000260517",
         "ENSG00000260526",
         "ENSG00000260572",
-        "ENSG00000260589",
         "ENSG00000260625",
         "ENSG00000260630",
+        "ENSG00000260645",
         "ENSG00000260790",
         "ENSG00000260804",
         "ENSG00000260876",
+        "ENSG00000260911",
+        "ENSG00000260923",
         "ENSG00000260924",
+        "ENSG00000261079",
         "ENSG00000261087",
+        "ENSG00000261118",
         "ENSG00000261126",
         "ENSG00000261150",
-        "ENSG00000261183",
         "ENSG00000261188",
         "ENSG00000261220",
         "ENSG00000261366",
@@ -3863,45 +3820,53 @@
         "ENSG00000261373",
         "ENSG00000261390",
         "ENSG00000261485",
+        "ENSG00000261542",
         "ENSG00000261652",
         "ENSG00000261701",
         "ENSG00000261794",
         "ENSG00000261879",
         "ENSG00000261971",
-        "ENSG00000262686",
+        "ENSG00000262050",
+        "ENSG00000262227",
+        "ENSG00000262580",
         "ENSG00000263004",
         "ENSG00000263155",
+        "ENSG00000264112",
         "ENSG00000264707",
         "ENSG00000265096",
+        "ENSG00000265107",
         "ENSG00000265142",
         "ENSG00000265148",
         "ENSG00000265190",
         "ENSG00000265458",
         "ENSG00000265485",
         "ENSG00000265666",
+        "ENSG00000265739",
         "ENSG00000265817",
         "ENSG00000266053",
         "ENSG00000266094",
         "ENSG00000266258",
         "ENSG00000266472",
+        "ENSG00000266490",
         "ENSG00000266904",
         "ENSG00000266916",
+        "ENSG00000266947",
         "ENSG00000266962",
         "ENSG00000266983",
+        "ENSG00000267011",
         "ENSG00000267040",
         "ENSG00000267060",
         "ENSG00000267064",
         "ENSG00000267191",
-        "ENSG00000267207",
+        "ENSG00000267199",
         "ENSG00000267254",
-        "ENSG00000267259",
         "ENSG00000267270",
         "ENSG00000267272",
+        "ENSG00000267279",
         "ENSG00000267289",
         "ENSG00000267313",
         "ENSG00000267337",
         "ENSG00000267348",
-        "ENSG00000267374",
         "ENSG00000267454",
         "ENSG00000267475",
         "ENSG00000267498",
@@ -3909,96 +3874,131 @@
         "ENSG00000267534",
         "ENSG00000267586",
         "ENSG00000267680",
+        "ENSG00000267737",
         "ENSG00000267751",
+        "ENSG00000267811",
+        "ENSG00000267939",
         "ENSG00000268001",
-        "ENSG00000268516",
+        "ENSG00000268093",
+        "ENSG00000268555",
+        "ENSG00000268584",
         "ENSG00000268654",
         "ENSG00000268658",
+        "ENSG00000268798",
         "ENSG00000268895",
         "ENSG00000268996",
         "ENSG00000269067",
         "ENSG00000269113",
         "ENSG00000269235",
         "ENSG00000269313",
+        "ENSG00000269635",
         "ENSG00000269696",
         "ENSG00000269699",
+        "ENSG00000269886",
+        "ENSG00000269921",
         "ENSG00000269956",
         "ENSG00000269959",
         "ENSG00000269964",
+        "ENSG00000269973",
         "ENSG00000270006",
-        "ENSG00000270049",
         "ENSG00000270084",
+        "ENSG00000270127",
         "ENSG00000270170",
+        "ENSG00000270361",
+        "ENSG00000270562",
+        "ENSG00000270638",
+        "ENSG00000270659",
         "ENSG00000270761",
         "ENSG00000270820",
+        "ENSG00000270885",
         "ENSG00000270959",
         "ENSG00000270964",
         "ENSG00000271122",
-        "ENSG00000271335",
-        "ENSG00000271447",
+        "ENSG00000271553",
         "ENSG00000271576",
         "ENSG00000271605",
         "ENSG00000271643",
+        "ENSG00000271780",
+        "ENSG00000271918",
         "ENSG00000271931",
+        "ENSG00000272077",
         "ENSG00000272086",
+        "ENSG00000272092",
+        "ENSG00000272106",
+        "ENSG00000272129",
         "ENSG00000272142",
         "ENSG00000272143",
         "ENSG00000272145",
         "ENSG00000272189",
-        "ENSG00000272323",
+        "ENSG00000272335",
+        "ENSG00000272341",
+        "ENSG00000272345",
         "ENSG00000272374",
-        "ENSG00000272381",
+        "ENSG00000272426",
         "ENSG00000272462",
+        "ENSG00000272463",
+        "ENSG00000272482",
         "ENSG00000272523",
         "ENSG00000272525",
         "ENSG00000272568",
-        "ENSG00000272636",
+        "ENSG00000272572",
+        "ENSG00000272630",
+        "ENSG00000272631",
         "ENSG00000272654",
         "ENSG00000272663",
         "ENSG00000272695",
         "ENSG00000272716",
+        "ENSG00000272720",
+        "ENSG00000272750",
+        "ENSG00000272754",
         "ENSG00000272767",
+        "ENSG00000272777",
         "ENSG00000272795",
+        "ENSG00000272807",
         "ENSG00000272853",
+        "ENSG00000272864",
         "ENSG00000272894",
+        "ENSG00000272970",
+        "ENSG00000272990",
         "ENSG00000272994",
         "ENSG00000273008",
+        "ENSG00000273010",
         "ENSG00000273033",
         "ENSG00000273045",
+        "ENSG00000273058",
         "ENSG00000273079",
+        "ENSG00000273080",
         "ENSG00000273084",
         "ENSG00000273125",
         "ENSG00000273142",
-        "ENSG00000273148",
+        "ENSG00000273145",
+        "ENSG00000273156",
+        "ENSG00000273174",
+        "ENSG00000273209",
+        "ENSG00000273218",
         "ENSG00000273253",
+        "ENSG00000273254",
+        "ENSG00000273320",
         "ENSG00000273344",
+        "ENSG00000273355",
         "ENSG00000273356",
+        "ENSG00000273373",
         "ENSG00000273382",
-        "ENSG00000273611",
-        "ENSG00000273749",
+        "ENSG00000273391",
+        "ENSG00000273448",
+        "ENSG00000273486",
         "ENSG00000273899",
-        "ENSG00000274180",
         "ENSG00000274286",
         "ENSG00000274349",
-        "ENSG00000275004",
-        "ENSG00000275835",
-        "ENSG00000276023",
         "ENSG00000276043",
-        "ENSG00000276116",
-        "ENSG00000276180",
-        "ENSG00000276234",
         "ENSG00000276600",
-        "ENSG00000277161",
+        "ENSG00000276644",
+        "ENSG00000277462",
         "ENSG00000277481",
         "ENSG00000278129",
-        "ENSG00000278175",
-        "ENSG00000278311",
-        "ENSG00000278619",
+        "ENSG00000278570",
         "ENSG00000278828",
-        "ENSG00000278916",
         "ENSG00000280670",
-        "ENSG00000281103",
-        "ENSG00000281332",
         "ENSG00000290292"
     ],
     "label_categories": [

pynndescent_index.joblib

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:85951d7da2f4085eed5f10bdb0d578faf18e7ca67a0cb45b568b6f011211b2c8
-size 36670972

scanvi/model.pt

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:5ddf37ea9f30efe8a254da6f4d02b8acb3ed448670124e2611405b8966f5ea59
-size 11823916
+oid sha256:23e3fbbe81da196ca91e342e3c9aaa91d3e0b310ea76c3f8d3247c71c617c693
+size 12068597

scvi/model.pt

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:38943304287e2771e66b25d9c0440c7c9878b99c4818865cfe0d64f1b0ece9d5
-size 11246653
+oid sha256:4f884e21c81c22fbac826254e755d8fc971bd9fbbac47c69ad2fe7dbf48686d8
+size 11252678

scvi_knn_classifier.joblib → scvi_knn_classifier.index

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:954d52aabd1249b55715dd46520bea833decf4800945ef9a2ee0d932c1c4c231
-size 18975397
+oid sha256:8035f681f87696086c250063518978ee01b522cd1a2af1f7c8f031c593d8384f
+size 3523725

svm_classifier.joblib

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:46d57c44382efa69a81d4e770f6df004bb038243864f4ec8067ebfaeeecc8494
-size 4106927
+oid sha256:e64ec16f851b6ea2e6fbb2380dc9b85a0f0c19f73816f7955750acd25e2bd58d
+size 418952

xgboost_classifier.model

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:80dffcbefff547a221a7a56ad3d20f00077e43e065b1379d4bc3d5d496b678f0
-size 6020233
+oid sha256:3298bdfaf4adc59772ffe3105912df10d2a1739b2bf5d1248bc7e6ae55981217
+size 5812961