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OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

@@ -1,4 +1,4 @@
 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal cell of prostate epithelium | 1058 | 0.93 | 0.96 | 0.96 | 0.95 | 0.00 | 0.91 | 0.94 | 0.94 | 0.95 |\n| basal cell of prostate epithelium | 345 | 0.82 | 0.88 | 0.89 | 0.85 | 0.00 | 0.82 | 0.86 | 0.85 | 0.88 |\n| CD8-positive, alpha-beta T cell | 252 | 0.94 | 0.88 | 0.95 | 0.88 | 0.00 | 0.94 | 0.92 | 0.93 | 0.94 |\n| endothelial cell | 120 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.99 | 0.98 | 0.97 | 0.98 |\n| macrophage | 94 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.96 | 0.98 |\n| fibroblast | 58 | 0.97 | 0.96 | 0.98 | 0.91 | 0.00 | 0.93 | 0.96 | 0.97 | 0.98 |\n| mature NK T cell | 52 | 0.92 | 0.11 | 0.92 | 0.32 | 0.00 | 0.95 | 0.92 | 0.91 | 0.92 |\n| smooth muscle cell | 52 | 0.95 | 0.96 | 0.94 | 0.88 | 0.00 | 0.87 | 0.94 | 0.90 | 0.95 |\n| neutrophil | 23 | 0.98 | 0.98 | 1.00 | 1.00 | 0.00 | 0.96 | 0.98 | 1.00 | 0.98 |\n| erythrocyte | 22 | 0.86 | 0.88 | 0.95 | 0.95 | 0.00 | 0.76 | 0.98 | 0.98 | 0.98 |\n| CD4-positive, alpha-beta T cell | 13 | 0.11 | 0.00 | 0.13 | 0.12 | 0.00 | 0.40 | 0.43 | 0.52 | 0.24 |\n| B cell | 9 | 0.82 | 0.82 | 0.82 | 0.82 | 0.00 | 0.95 | 0.89 | 0.84 | 0.89 |\n| mast cell | 4 | 1.00 | 0.89 | 1.00 | 0.57 | 0.00 | 0.43 | 1.00 | 1.00 | 1.00 |\n| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.17 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal cell of prostate epithelium | 9594 | 0.94 | 0.96 | 0.98 | 0.97 | 0.00 | 0.93 | 0.95 | 0.95 | 0.97 |\n| basal cell of prostate epithelium | 3150 | 0.84 | 0.88 | 0.94 | 0.92 | 0.00 | 0.85 | 0.88 | 0.88 | 0.91 |\n| CD8-positive, alpha-beta T cell | 2264 | 0.95 | 0.88 | 0.96 | 0.91 | 0.00 | 0.96 | 0.94 | 0.94 | 0.96 |\n| endothelial cell | 1085 | 0.97 | 0.94 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.97 | 0.98 |\n| macrophage | 928 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| fibroblast | 461 | 0.96 | 0.96 | 0.99 | 0.95 | 0.00 | 0.90 | 0.98 | 0.98 | 0.99 |\n| mature NK T cell | 435 | 0.91 | 0.18 | 0.92 | 0.56 | 0.00 | 0.91 | 0.91 | 0.92 | 0.94 |\n| smooth muscle cell | 425 | 0.95 | 0.91 | 0.96 | 0.91 | 0.00 | 0.88 | 0.97 | 0.96 | 0.98 |\n| neutrophil | 238 | 0.99 | 0.98 | 0.99 | 0.98 | 0.00 | 0.98 | 1.00 | 0.99 | 0.99 |\n| erythrocyte | 117 | 0.87 | 0.82 | 0.97 | 0.96 | 0.00 | 0.62 | 0.99 | 0.99 | 0.98 |\n| CD4-positive, alpha-beta T cell | 103 | 0.28 | 0.00 | 0.16 | 0.16 | 0.00 | 0.66 | 0.63 | 0.65 | 0.46 |\n| B cell | 92 | 0.83 | 0.70 | 0.84 | 0.90 | 0.00 | 0.94 | 0.97 | 0.96 | 0.96 |\n| mast cell | 22 | 0.96 | 0.70 | 0.95 | 0.87 | 0.00 | 0.58 | 0.98 | 0.98 | 0.98 |\n| T cell | 13 | 0.00 | 0.00 | 0.24 | 0.00 | 0.00 | 0.45 | 0.93 | 0.67 | 0.88 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal cell of prostate epithelium | 1059 | 0.95 | 0.96 | 0.97 | 0.94 | 0.00 | 0.91 | 0.95 | 0.94 | 0.96 |\n| basal cell of prostate epithelium | 349 | 0.86 | 0.88 | 0.90 | 0.83 | 0.00 | 0.81 | 0.88 | 0.85 | 0.90 |\n| CD8-positive, alpha-beta T cell | 259 | 0.94 | 0.89 | 0.95 | 0.87 | 0.00 | 0.94 | 0.92 | 0.94 | 0.95 |\n| endothelial cell | 123 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.97 | 0.98 | 0.98 |\n| macrophage | 89 | 0.96 | 0.98 | 0.98 | 0.97 | 0.00 | 0.98 | 0.98 | 0.95 | 0.98 |\n| fibroblast | 58 | 0.96 | 0.94 | 0.97 | 0.90 | 0.00 | 0.98 | 0.95 | 0.94 | 0.97 |\n| mature NK T cell | 50 | 0.91 | 0.18 | 0.91 | 0.24 | 0.00 | 0.94 | 0.91 | 0.92 | 0.92 |\n| smooth muscle cell | 48 | 0.96 | 0.95 | 0.92 | 0.82 | 0.00 | 0.79 | 0.95 | 0.90 | 0.93 |\n| neutrophil | 22 | 0.98 | 1.00 | 1.00 | 0.91 | 0.00 | 0.98 | 0.96 | 0.96 | 0.96 |\n| erythrocyte | 20 | 0.90 | 0.88 | 0.93 | 0.77 | 0.00 | 0.97 | 0.97 | 0.93 | 0.97 |\n| CD4-positive, alpha-beta T cell | 13 | 0.26 | 0.00 | 0.12 | 0.00 | 0.00 | 0.40 | 0.50 | 0.57 | 0.21 |\n| B cell | 8 | 0.80 | 0.80 | 0.80 | 0.75 | 0.00 | 0.89 | 0.88 | 0.86 | 0.80 |\n| mast cell | 4 | 1.00 | 0.75 | 1.00 | 0.33 | 0.00 | 0.75 | 1.00 | 1.00 | 1.00 |\n| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal cell of prostate epithelium | 9593 | 0.95 | 0.96 | 0.98 | 0.96 | 0.00 | 0.93 | 0.95 | 0.95 | 0.97 |\n| basal cell of prostate epithelium | 3146 | 0.86 | 0.88 | 0.94 | 0.90 | 0.00 | 0.84 | 0.89 | 0.88 | 0.91 |\n| CD8-positive, alpha-beta T cell | 2257 | 0.94 | 0.88 | 0.96 | 0.91 | 0.00 | 0.96 | 0.95 | 0.95 | 0.96 |\n| endothelial cell | 1082 | 0.98 | 0.94 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |\n| macrophage | 933 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |\n| fibroblast | 461 | 0.96 | 0.95 | 0.98 | 0.87 | 0.00 | 0.96 | 0.97 | 0.97 | 0.99 |\n| mature NK T cell | 437 | 0.91 | 0.16 | 0.92 | 0.53 | 0.00 | 0.94 | 0.92 | 0.93 | 0.95 |\n| smooth muscle cell | 429 | 0.96 | 0.90 | 0.97 | 0.84 | 0.00 | 0.89 | 0.97 | 0.97 | 0.98 |\n| neutrophil | 239 | 0.99 | 0.98 | 0.99 | 0.97 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| erythrocyte | 119 | 0.93 | 0.87 | 0.97 | 0.88 | 0.00 | 0.93 | 1.00 | 1.00 | 0.99 |\n| CD4-positive, alpha-beta T cell | 103 | 0.28 | 0.00 | 0.25 | 0.07 | 0.00 | 0.68 | 0.66 | 0.69 | 0.45 |\n| B cell | 93 | 0.83 | 0.82 | 0.83 | 0.82 | 0.00 | 0.95 | 0.96 | 0.96 | 0.97 |\n| mast cell | 22 | 0.98 | 0.67 | 0.98 | 0.46 | 0.00 | 0.81 | 1.00 | 0.98 | 0.98 |\n| T cell | 13 | 0.00 | 0.00 | 0.22 | 0.00 | 0.00 | 0.80 | 1.00 | 0.74 | 0.88 |"
 }

celltypist.pkl

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harmony_knn_classifier.joblib

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preprocessing.json

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         "ENSG00000030304",
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