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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| enterocyte of epithelium proper of duodenum | 1345 | 0.91 | 0.93 | 0.91 | 0.77 | 0.00 | 0.89 | 0.91 | 0.92 | 0.95 |\n| enterocyte of epithelium proper of ileum | 630 | 0.97 | 0.96 | 0.91 | 0.49 | 0.00 | 0.77 | 0.97 | 0.96 | 0.98 |\n| CD4-positive, alpha-beta T cell | 531 | 0.91 | 0.91 | 0.92 | 0.76 | 0.00 | 0.80 | 0.89 | 0.89 | 0.92 |\n| CD8-positive, alpha-beta T cell | 345 | 0.88 | 0.78 | 0.90 | 0.62 | 0.00 | 0.75 | 0.82 | 0.82 | 0.91 |\n| small intestine goblet cell | 215 | 0.94 | 0.95 | 0.95 | 0.86 | 0.00 | 0.85 | 0.93 | 0.93 | 0.94 |\n| paneth cell of epithelium of small intestine | 191 | 0.70 | 0.71 | 0.77 | 0.60 | 0.00 | 0.62 | 0.69 | 0.74 | 0.76 |\n| enterocyte of epithelium proper of small intestine | 150 | 0.61 | 0.60 | 0.69 | 0.47 | 0.00 | 0.65 | 0.74 | 0.77 | 0.81 |\n| activated CD8-positive, alpha-beta T cell | 94 | 0.82 | 0.41 | 0.82 | 0.50 | 0.00 | 0.35 | 0.65 | 0.69 | 0.79 |\n| plasma cell | 78 | 0.99 | 0.99 | 0.99 | 0.97 | 0.00 | 0.98 | 0.98 | 0.97 | 0.99 |\n| B cell | 69 | 0.99 | 0.99 | 0.98 | 0.96 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |\n| intestinal crypt stem cell of small intestine | 57 | 0.31 | 0.44 | 0.48 | 0.31 | 0.00 | 0.43 | 0.39 | 0.43 | 0.46 |\n| activated CD4-positive, alpha-beta T cell | 66 | 0.51 | 0.31 | 0.57 | 0.21 | 0.00 | 0.43 | 0.52 | 0.54 | 0.62 |\n| fibroblast | 46 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.97 | 1.00 | 0.97 | 0.99 |\n| intestinal tuft cell | 52 | 1.00 | 1.00 | 0.99 | 0.99 | 0.00 | 0.98 | 1.00 | 0.98 | 1.00 |\n| enterocyte of epithelium proper of jejunum | 47 | 0.21 | 0.14 | 0.23 | 0.19 | 0.00 | 0.00 | 0.51 | 0.50 | 0.39 |\n| macrophage | 48 | 0.88 | 0.94 | 0.91 | 0.85 | 0.00 | 0.85 | 0.92 | 0.90 | 0.95 |\n| enteroendocrine cell of small intestine | 19 | 0.86 | 0.86 | 0.86 | 0.73 | 0.00 | 0.84 | 0.81 | 0.85 | 0.84 |\n| mast cell | 24 | 0.98 | 1.00 | 0.98 | 0.96 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| natural killer cell | 19 | 0.00 | 0.25 | 0.34 | 0.00 | 0.00 | 0.15 | 0.10 | 0.33 | 0.31 |\n| enteroglial cell | 20 | 0.93 | 0.95 | 0.95 | 0.95 | 0.00 | 0.98 | 0.98 | 0.93 | 0.95 |\n| endothelial cell of arteriole | 15 | 0.77 | 0.94 | 0.77 | 0.75 | 0.00 | 0.87 | 0.97 | 0.90 | 0.94 |\n| gamma-delta T cell | 9 | 0.62 | 0.60 | 0.67 | 0.14 | 0.00 | 0.43 | 0.61 | 0.55 | 0.74 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 8 | 0.00 | 0.22 | 0.00 | 0.00 | 0.00 | 0.48 | 0.57 | 0.60 | 0.00 |\n| monocyte | 8 | 0.67 | 0.78 | 0.77 | 0.43 | 0.00 | 0.64 | 0.88 | 0.74 | 0.88 |\n| neutrophil | 5 | 0.50 | 0.80 | 0.46 | 0.55 | 0.00 | 0.33 | 0.73 | 0.60 | 0.67 |\n| endothelial cell of lymphatic vessel | 7 | 1.00 | 1.00 | 1.00 | 0.80 | 0.00 | 0.93 | 1.00 | 1.00 | 1.00 |\n| endothelial cell of venule | 6 | 0.67 | 0.83 | 0.50 | 0.44 | 0.00 | 0.71 | 0.92 | 0.73 | 0.83 |\n| myofibroblast cell | 6 | 0.67 | 0.91 | 1.00 | 0.80 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| transit amplifying cell of small intestine | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| innate lymphoid cell | 3 | 0.86 | 1.00 | 0.80 | 0.80 | 0.00 | 1.00 | 0.00 | 0.50 | 0.80 |\n| pericyte | 4 | 0.67 | 1.00 | 1.00 | 1.00 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |\n| regulatory T cell | 3 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 0.33 | 0.00 | 0.50 | 0.50 |\n| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| enterocyte of epithelium proper of duodenum | 12150 | 0.92 | 0.90 | 0.95 | 0.86 | 0.00 | 0.95 | 0.92 | 0.93 | 0.96 |\n| enterocyte of epithelium proper of ileum | 5847 | 0.97 | 0.95 | 0.95 | 0.70 | 0.00 | 0.96 | 0.98 | 0.98 | 0.99 |\n| CD4-positive, alpha-beta T cell | 4624 | 0.90 | 0.90 | 0.94 | 0.86 | 0.00 | 0.91 | 0.91 | 0.91 | 0.95 |\n| CD8-positive, alpha-beta T cell | 3127 | 0.86 | 0.74 | 0.93 | 0.74 | 0.00 | 0.85 | 0.85 | 0.88 | 0.94 |\n| small intestine goblet cell | 1829 | 0.94 | 0.94 | 0.96 | 0.87 | 0.00 | 0.87 | 0.94 | 0.95 | 0.95 |\n| paneth cell of epithelium of small intestine | 1662 | 0.70 | 0.72 | 0.82 | 0.77 | 0.00 | 0.70 | 0.76 | 0.80 | 0.83 |\n| enterocyte of epithelium proper of small intestine | 1265 | 0.59 | 0.44 | 0.80 | 0.74 | 0.00 | 0.86 | 0.81 | 0.83 | 0.88 |\n| activated CD8-positive, alpha-beta T cell | 1053 | 0.76 | 0.40 | 0.91 | 0.77 | 0.00 | 0.74 | 0.79 | 0.83 | 0.90 |\n| plasma cell | 744 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| B cell | 704 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| intestinal crypt stem cell of small intestine | 530 | 0.37 | 0.44 | 0.53 | 0.52 | 0.00 | 0.50 | 0.60 | 0.64 | 0.65 |\n| activated CD4-positive, alpha-beta T cell | 504 | 0.46 | 0.30 | 0.72 | 0.49 | 0.00 | 0.60 | 0.61 | 0.65 | 0.76 |\n| fibroblast | 447 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.96 | 0.99 | 0.99 | 0.98 |\n| intestinal tuft cell | 396 | 0.96 | 0.97 | 0.98 | 0.97 | 0.00 | 0.97 | 0.99 | 0.98 | 0.98 |\n| enterocyte of epithelium proper of jejunum | 358 | 0.24 | 0.01 | 0.80 | 0.39 | 0.00 | 0.96 | 0.57 | 0.56 | 0.84 |\n| macrophage | 318 | 0.89 | 0.92 | 0.94 | 0.89 | 0.00 | 0.97 | 0.99 | 0.98 | 0.98 |\n| enteroendocrine cell of small intestine | 245 | 0.91 | 0.91 | 0.93 | 0.91 | 0.00 | 0.91 | 0.91 | 0.92 | 0.94 |\n| mast cell | 226 | 0.95 | 0.97 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.99 | 0.98 |\n| natural killer cell | 142 | 0.00 | 0.18 | 0.49 | 0.31 | 0.00 | 0.45 | 0.77 | 0.87 | 0.88 |\n| enteroglial cell | 122 | 0.92 | 0.92 | 0.95 | 0.93 | 0.00 | 0.97 | 0.98 | 0.99 | 0.98 |\n| endothelial cell of arteriole | 117 | 0.84 | 0.94 | 0.90 | 0.86 | 0.00 | 0.94 | 0.99 | 1.00 | 0.97 |\n| gamma-delta T cell | 112 | 0.74 | 0.67 | 0.79 | 0.63 | 0.00 | 0.72 | 0.96 | 0.97 | 0.97 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 107 | 0.00 | 0.36 | 0.40 | 0.18 | 0.00 | 0.78 | 0.92 | 0.90 | 0.69 |\n| monocyte | 70 | 0.74 | 0.86 | 0.82 | 0.64 | 0.00 | 0.77 | 1.00 | 1.00 | 0.99 |\n| neutrophil | 72 | 0.71 | 0.74 | 0.82 | 0.72 | 0.00 | 0.86 | 0.99 | 0.99 | 0.93 |\n| endothelial cell of lymphatic vessel | 66 | 0.98 | 0.98 | 0.98 | 0.90 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| endothelial cell of venule | 46 | 0.69 | 0.87 | 0.78 | 0.55 | 0.00 | 0.95 | 0.96 | 0.97 | 0.95 |\n| myofibroblast cell | 45 | 0.75 | 0.94 | 0.95 | 0.88 | 0.00 | 0.85 | 0.97 | 0.95 | 0.96 |\n| transit amplifying cell of small intestine | 32 | 0.00 | 0.00 | 0.49 | 0.06 | 0.00 | 0.57 | 0.77 | 0.89 | 0.90 |\n| innate lymphoid cell | 31 | 0.66 | 0.62 | 0.71 | 0.67 | 0.00 | 0.90 | 0.98 | 1.00 | 0.92 |\n| pericyte | 20 | 0.61 | 0.95 | 0.93 | 0.77 | 0.00 | 0.61 | 1.00 | 1.00 | 0.95 |\n| regulatory T cell | 12 | 0.00 | 0.40 | 0.50 | 0.50 | 0.00 | 0.75 | 1.00 | 1.00 | 0.86 |\n| myeloid dendritic cell | 10 | 0.00 | 0.53 | 0.62 | 0.62 | 0.00 | 0.74 | 0.91 | 1.00 | 0.86 |"
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checkpoint

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