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popV
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tabula_sapiens_Testis

Joblib
popV
biology
genomics
single-cell
AnnData:0.12.2
scikit_learn:1.7.2
organism:Homo sapiens
Python:3.12.8
popV:0.6.0
tissue: Testis
Model card Files
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@@ -5,7 +5,8 @@ tags:
5
  - biology
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  - genomics
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  - single-cell
8
- - anndata_version:0.11.1
 
9
  - popV
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  - 'tissue: Testis'
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  ---
@@ -31,14 +32,14 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | spermatid | 405 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
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- | spermatocyte | 299 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.96 | 0.99 | 0.97 | 0.99 |
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- | male germ cell | 12 | 1.00 | 1.00 | 1.00 | 0.96 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | peritubular myoid cell | 11 | 0.80 | 0.91 | 0.82 | 0.74 | 0.00 | 0.83 | 0.87 | 0.92 | 0.91 |
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- | spermatogonium | 7 | 0.93 | 0.93 | 0.93 | 0.93 | 0.00 | 0.88 | 0.93 | 0.88 | 0.93 |
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- | stromal cell | 6 | 0.86 | 0.60 | 0.80 | 0.67 | 0.00 | 0.86 | 0.77 | 0.92 | 0.86 |
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- | tissue-resident macrophage | 4 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |
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- | endothelial cell | 7 | 0.83 | 0.92 | 0.92 | 0.92 | 0.00 | 0.92 | 0.92 | 0.92 | 0.92 |
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  | Leydig cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -51,17 +52,17 @@ The train accuracies are computed on the training data.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
53
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | spermatid | 3604 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
55
- | spermatocyte | 2771 | 0.97 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.99 |
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- | male germ cell | 104 | 0.97 | 0.99 | 0.99 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
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- | peritubular myoid cell | 56 | 0.75 | 0.76 | 0.87 | 0.73 | 0.00 | 0.91 | 0.99 | 0.98 | 0.95 |
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- | spermatogonium | 57 | 0.86 | 0.85 | 0.92 | 0.89 | 0.00 | 0.83 | 0.91 | 0.87 | 0.93 |
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- | stromal cell | 55 | 0.81 | 0.65 | 0.87 | 0.80 | 0.00 | 0.96 | 0.99 | 1.00 | 0.93 |
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- | tissue-resident macrophage | 50 | 0.91 | 0.93 | 0.97 | 0.96 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |
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- | endothelial cell | 46 | 1.00 | 1.00 | 1.00 | 0.95 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | Leydig cell | 9 | 0.00 | 0.11 | 0.33 | 0.38 | 0.00 | 0.94 | 1.00 | 1.00 | 0.71 |
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- | CD8-positive, alpha-beta T cell | 3 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
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- | CD4-positive, alpha-beta T cell | 2 | 0.00 | 0.50 | 0.57 | 0.40 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
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  | mast cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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  | macrophage | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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  | B cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
 
5
  - biology
6
  - genomics
7
  - single-cell
8
+ - anndata_version:0.11.3
9
+ - python_version:3.11.11
10
  - popV
11
  - 'tissue: Testis'
12
  ---
 
32
 
33
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
+ | spermatid | 406 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |
36
+ | spermatocyte | 298 | 0.96 | 0.97 | 0.99 | 0.98 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |
37
+ | male germ cell | 11 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.88 | 1.00 | 1.00 | 1.00 |
38
+ | peritubular myoid cell | 11 | 0.83 | 0.83 | 0.91 | 0.73 | 0.00 | 0.70 | 0.87 | 0.96 | 0.87 |
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+ | spermatogonium | 7 | 0.88 | 0.93 | 0.93 | 0.86 | 0.00 | 0.70 | 0.93 | 1.00 | 0.93 |
40
+ | stromal cell | 6 | 0.86 | 0.60 | 0.86 | 0.71 | 0.00 | 0.67 | 0.77 | 0.92 | 0.86 |
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+ | tissue-resident macrophage | 5 | 1.00 | 1.00 | 1.00 | 0.89 | 0.00 | 1.00 | 1.00 | 0.89 | 1.00 |
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+ | endothelial cell | 7 | 0.83 | 0.92 | 0.92 | 0.77 | 0.00 | 0.92 | 0.92 | 0.92 | 0.92 |
43
  | Leydig cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
45
  | CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
52
 
53
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
54
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
55
+ | spermatid | 3603 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
56
+ | spermatocyte | 2772 | 0.97 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.99 |
57
+ | male germ cell | 105 | 0.98 | 0.98 | 0.99 | 0.97 | 0.00 | 0.91 | 1.00 | 1.00 | 1.00 |
58
+ | peritubular myoid cell | 56 | 0.76 | 0.83 | 0.88 | 0.77 | 0.00 | 0.96 | 0.99 | 1.00 | 0.95 |
59
+ | spermatogonium | 57 | 0.85 | 0.86 | 0.92 | 0.85 | 0.00 | 0.71 | 0.93 | 0.88 | 0.94 |
60
+ | stromal cell | 55 | 0.81 | 0.71 | 0.82 | 0.77 | 0.00 | 0.98 | 1.00 | 1.00 | 0.92 |
61
+ | tissue-resident macrophage | 49 | 0.91 | 0.97 | 0.98 | 0.88 | 0.00 | 1.00 | 1.00 | 0.99 | 0.99 |
62
+ | endothelial cell | 46 | 1.00 | 1.00 | 1.00 | 0.85 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
63
+ | Leydig cell | 9 | 0.00 | 0.14 | 0.00 | 0.14 | 0.00 | 0.95 | 1.00 | 1.00 | 0.50 |
64
+ | CD8-positive, alpha-beta T cell | 3 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
65
+ | CD4-positive, alpha-beta T cell | 2 | 0.00 | 0.57 | 0.50 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
66
  | mast cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
67
  | macrophage | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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  | B cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |