popV version: 0.6.0

.gitattributes

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OnClass.data-00000-of-00001

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OnClass.npz

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README.md

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----
-library_name: popV
-license: cc-by-4.0
-tags:
-- biology
-- genomics
-- single-cell
-- anndata_version:0.11.3
-- python_version:3.11.11
-- popV
-- 'tissue: Tongue'
----
-
-Popular Vote (popV) model for automated cell type annotation of single-cell RNA-seq data. We provide here pretrained models
-for plug-in use in your own analysis.
-Follow our [tutorial](https://github.com/YosefLab/popV/blob/main/tabula_sapiens_tutorial.ipynb) to learn how to use the model for cell type annotation.
-
-# Model description
-
-Tabula Sapiens is a benchmark, first-draft human cell atlas of over 1.1M cells from 28 organs of 24 normal human subjects. This work is the product of the Tabula Sapiens Consortium. Taking the organs from the same individual controls for genetic background, age, environment, and epigenetic effects, and allows detailed analysis and comparison of cell types that are shared between tissues.
-
-**Link to CELLxGENE**:
-Link to the [data](https://cellxgene.cziscience.com/e/55cf0ea3-9d2b-4294-871e-bb4b49a79fc7.cxg/) in the CELLxGENE browser for interactive exploration of the data and download of the source data.
-
-**Training Code URL**:
-Not provided by uploader.
-
-# Metrics
-
-We provide here accuracies for each of the experts and the ensemble model. The validation set accuracies are
-computed on a 10% random subset of the data that was not used for training.
-
-| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
-| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| basal cell | 1655 | 0.86 | 0.89 | 0.92 | 0.90 | 0.00 | 0.85 | 0.88 | 0.88 | 0.91 |
-| stratified squamous epithelial cell | 1166 | 0.84 | 0.89 | 0.90 | 0.87 | 0.00 | 0.84 | 0.85 | 0.85 | 0.89 |
-| CD4-positive, alpha-beta T cell | 155 | 0.68 | 0.72 | 0.72 | 0.62 | 0.00 | 0.71 | 0.66 | 0.69 | 0.75 |
-| fibroblast | 173 | 0.97 | 0.97 | 0.98 | 0.96 | 0.00 | 0.96 | 0.96 | 0.96 | 0.96 |
-| B cell | 121 | 0.97 | 0.97 | 0.97 | 0.89 | 0.00 | 0.95 | 0.97 | 0.97 | 0.97 |
-| endothelial cell | 133 | 0.99 | 0.99 | 0.99 | 0.97 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |
-| CD8-positive, alpha-beta T cell | 125 | 0.75 | 0.74 | 0.74 | 0.62 | 0.00 | 0.78 | 0.73 | 0.79 | 0.78 |
-| salivary gland cell | 87 | 0.89 | 0.13 | 0.91 | 0.82 | 0.00 | 0.67 | 0.85 | 0.89 | 0.89 |
-| mural cell | 61 | 0.95 | 0.93 | 0.97 | 0.94 | 0.00 | 0.94 | 0.95 | 0.92 | 0.95 |
-| macrophage | 50 | 0.81 | 0.79 | 0.81 | 0.69 | 0.00 | 0.74 | 0.83 | 0.80 | 0.81 |
-| myoepithelial cell | 26 | 0.79 | 0.00 | 0.87 | 0.82 | 0.00 | 0.78 | 0.83 | 0.84 | 0.88 |
-| tongue muscle cell | 15 | 0.76 | 0.79 | 0.81 | 0.83 | 0.00 | 0.82 | 0.75 | 0.83 | 0.80 |
-| T cell | 20 | 0.37 | 0.00 | 0.19 | 0.00 | 0.00 | 0.30 | 0.39 | 0.32 | 0.33 |
-| neutrophil | 18 | 0.92 | 1.00 | 1.00 | 0.89 | 0.00 | 0.97 | 1.00 | 0.95 | 1.00 |
-| monocyte | 12 | 0.65 | 0.55 | 0.50 | 0.27 | 0.00 | 0.50 | 0.64 | 0.52 | 0.64 |
-| plasma cell | 10 | 0.95 | 0.75 | 0.95 | 0.46 | 0.00 | 1.00 | 1.00 | 0.95 | 1.00 |
-| endothelial cell of lymphatic vessel | 8 | 0.80 | 0.86 | 0.80 | 0.80 | 0.00 | 0.80 | 0.80 | 0.80 | 0.80 |
-| regulatory T cell | 9 | 0.29 | 0.33 | 0.29 | 0.00 | 0.00 | 0.55 | 0.53 | 0.76 | 0.53 |
-| mast cell | 11 | 0.88 | 0.88 | 0.92 | 0.60 | 0.00 | 0.85 | 0.88 | 0.92 | 0.88 |
-| Schwann cell | 4 | 0.60 | 0.75 | 0.75 | 0.67 | 0.00 | 0.67 | 0.75 | 0.67 | 0.67 |
-| taste receptor cell | 2 | 0.67 | 0.67 | 0.67 | 0.67 | 0.00 | 0.25 | 1.00 | 0.50 | 0.67 |
-| myeloid dendritic cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| natural killer cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-
-The train accuracies are computed on the training data.
-
-| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
-| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| basal cell | 14608 | 0.87 | 0.89 | 0.96 | 0.94 | 0.00 | 0.87 | 0.89 | 0.90 | 0.93 |
-| stratified squamous epithelial cell | 11147 | 0.86 | 0.90 | 0.95 | 0.93 | 0.00 | 0.87 | 0.87 | 0.88 | 0.92 |
-| CD4-positive, alpha-beta T cell | 1432 | 0.75 | 0.73 | 0.84 | 0.76 | 0.00 | 0.81 | 0.82 | 0.87 | 0.87 |
-| fibroblast | 1358 | 0.96 | 0.97 | 0.98 | 0.97 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |
-| B cell | 1129 | 0.99 | 0.96 | 0.99 | 0.94 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
-| endothelial cell | 1088 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |
-| CD8-positive, alpha-beta T cell | 982 | 0.77 | 0.74 | 0.84 | 0.69 | 0.00 | 0.82 | 0.83 | 0.88 | 0.85 |
-| salivary gland cell | 761 | 0.88 | 0.07 | 0.93 | 0.88 | 0.00 | 0.69 | 0.91 | 0.92 | 0.92 |
-| mural cell | 557 | 0.92 | 0.91 | 0.95 | 0.94 | 0.00 | 0.94 | 0.97 | 0.97 | 0.95 |
-| macrophage | 520 | 0.80 | 0.85 | 0.91 | 0.84 | 0.00 | 0.90 | 0.96 | 0.94 | 0.95 |
-| myoepithelial cell | 244 | 0.82 | 0.00 | 0.92 | 0.88 | 0.00 | 0.78 | 0.88 | 0.88 | 0.91 |
-| tongue muscle cell | 187 | 0.86 | 0.83 | 0.90 | 0.81 | 0.00 | 0.88 | 0.96 | 0.98 | 0.94 |
-| T cell | 174 | 0.49 | 0.00 | 0.51 | 0.32 | 0.00 | 0.65 | 0.75 | 0.80 | 0.83 |
-| neutrophil | 136 | 0.86 | 0.97 | 0.98 | 0.93 | 0.00 | 0.94 | 0.98 | 0.97 | 0.97 |
-| monocyte | 127 | 0.65 | 0.51 | 0.75 | 0.68 | 0.00 | 0.70 | 0.95 | 0.97 | 0.95 |
-| plasma cell | 105 | 0.94 | 0.84 | 0.99 | 0.55 | 0.00 | 0.97 | 1.00 | 0.98 | 1.00 |
-| endothelial cell of lymphatic vessel | 89 | 0.93 | 0.93 | 0.97 | 0.94 | 0.00 | 0.91 | 0.98 | 0.97 | 0.97 |
-| regulatory T cell | 83 | 0.49 | 0.02 | 0.65 | 0.07 | 0.00 | 0.83 | 0.85 | 0.88 | 0.83 |
-| mast cell | 65 | 0.97 | 0.98 | 0.98 | 0.71 | 0.00 | 0.96 | 0.97 | 0.96 | 0.98 |
-| Schwann cell | 31 | 0.56 | 0.57 | 0.70 | 0.55 | 0.00 | 0.83 | 0.98 | 0.95 | 0.85 |
-| taste receptor cell | 30 | 0.82 | 0.50 | 0.89 | 0.72 | 0.00 | 0.28 | 0.98 | 0.68 | 0.97 |
-| myeloid dendritic cell | 17 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.34 | 1.00 | 1.00 | 0.69 |
-| natural killer cell | 8 | 0.00 | 0.00 | 0.22 | 0.00 | 0.00 | 0.52 | 0.94 | 1.00 | 0.40 |
-
-</details>
-
-
-# References
-
-Tabula Sapiens reveals transcription factor expression, senescence effects, and sex-specific features in cell types from 28 human organs and tissues, The Tabula Sapiens Consortium; bioRxiv, doi: https://doi.org/10.1101/2024.12.03.626516

accuracies.json

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-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 1655 | 0.86 | 0.89 | 0.92 | 0.90 | 0.00 | 0.85 | 0.88 | 0.88 | 0.91 |\n| stratified squamous epithelial cell | 1166 | 0.84 | 0.89 | 0.90 | 0.87 | 0.00 | 0.84 | 0.85 | 0.85 | 0.89 |\n| CD4-positive, alpha-beta T cell | 155 | 0.68 | 0.72 | 0.72 | 0.62 | 0.00 | 0.71 | 0.66 | 0.69 | 0.75 |\n| fibroblast | 173 | 0.97 | 0.97 | 0.98 | 0.96 | 0.00 | 0.96 | 0.96 | 0.96 | 0.96 |\n| B cell | 121 | 0.97 | 0.97 | 0.97 | 0.89 | 0.00 | 0.95 | 0.97 | 0.97 | 0.97 |\n| endothelial cell | 133 | 0.99 | 0.99 | 0.99 | 0.97 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |\n| CD8-positive, alpha-beta T cell | 125 | 0.75 | 0.74 | 0.74 | 0.62 | 0.00 | 0.78 | 0.73 | 0.79 | 0.78 |\n| salivary gland cell | 87 | 0.89 | 0.13 | 0.91 | 0.82 | 0.00 | 0.67 | 0.85 | 0.89 | 0.89 |\n| mural cell | 61 | 0.95 | 0.93 | 0.97 | 0.94 | 0.00 | 0.94 | 0.95 | 0.92 | 0.95 |\n| macrophage | 50 | 0.81 | 0.79 | 0.81 | 0.69 | 0.00 | 0.74 | 0.83 | 0.80 | 0.81 |\n| myoepithelial cell | 26 | 0.79 | 0.00 | 0.87 | 0.82 | 0.00 | 0.78 | 0.83 | 0.84 | 0.88 |\n| tongue muscle cell | 15 | 0.76 | 0.79 | 0.81 | 0.83 | 0.00 | 0.82 | 0.75 | 0.83 | 0.80 |\n| T cell | 20 | 0.37 | 0.00 | 0.19 | 0.00 | 0.00 | 0.30 | 0.39 | 0.32 | 0.33 |\n| neutrophil | 18 | 0.92 | 1.00 | 1.00 | 0.89 | 0.00 | 0.97 | 1.00 | 0.95 | 1.00 |\n| monocyte | 12 | 0.65 | 0.55 | 0.50 | 0.27 | 0.00 | 0.50 | 0.64 | 0.52 | 0.64 |\n| plasma cell | 10 | 0.95 | 0.75 | 0.95 | 0.46 | 0.00 | 1.00 | 1.00 | 0.95 | 1.00 |\n| endothelial cell of lymphatic vessel | 8 | 0.80 | 0.86 | 0.80 | 0.80 | 0.00 | 0.80 | 0.80 | 0.80 | 0.80 |\n| regulatory T cell | 9 | 0.29 | 0.33 | 0.29 | 0.00 | 0.00 | 0.55 | 0.53 | 0.76 | 0.53 |\n| mast cell | 11 | 0.88 | 0.88 | 0.92 | 0.60 | 0.00 | 0.85 | 0.88 | 0.92 | 0.88 |\n| Schwann cell | 4 | 0.60 | 0.75 | 0.75 | 0.67 | 0.00 | 0.67 | 0.75 | 0.67 | 0.67 |\n| taste receptor cell | 2 | 0.67 | 0.67 | 0.67 | 0.67 | 0.00 | 0.25 | 1.00 | 0.50 | 0.67 |\n| myeloid dendritic cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| natural killer cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 14608 | 0.87 | 0.89 | 0.96 | 0.94 | 0.00 | 0.87 | 0.89 | 0.90 | 0.93 |\n| stratified squamous epithelial cell | 11147 | 0.86 | 0.90 | 0.95 | 0.93 | 0.00 | 0.87 | 0.87 | 0.88 | 0.92 |\n| CD4-positive, alpha-beta T cell | 1432 | 0.75 | 0.73 | 0.84 | 0.76 | 0.00 | 0.81 | 0.82 | 0.87 | 0.87 |\n| fibroblast | 1358 | 0.96 | 0.97 | 0.98 | 0.97 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |\n| B cell | 1129 | 0.99 | 0.96 | 0.99 | 0.94 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| endothelial cell | 1088 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |\n| CD8-positive, alpha-beta T cell | 982 | 0.77 | 0.74 | 0.84 | 0.69 | 0.00 | 0.82 | 0.83 | 0.88 | 0.85 |\n| salivary gland cell | 761 | 0.88 | 0.07 | 0.93 | 0.88 | 0.00 | 0.69 | 0.91 | 0.92 | 0.92 |\n| mural cell | 557 | 0.92 | 0.91 | 0.95 | 0.94 | 0.00 | 0.94 | 0.97 | 0.97 | 0.95 |\n| macrophage | 520 | 0.80 | 0.85 | 0.91 | 0.84 | 0.00 | 0.90 | 0.96 | 0.94 | 0.95 |\n| myoepithelial cell | 244 | 0.82 | 0.00 | 0.92 | 0.88 | 0.00 | 0.78 | 0.88 | 0.88 | 0.91 |\n| tongue muscle cell | 187 | 0.86 | 0.83 | 0.90 | 0.81 | 0.00 | 0.88 | 0.96 | 0.98 | 0.94 |\n| T cell | 174 | 0.49 | 0.00 | 0.51 | 0.32 | 0.00 | 0.65 | 0.75 | 0.80 | 0.83 |\n| neutrophil | 136 | 0.86 | 0.97 | 0.98 | 0.93 | 0.00 | 0.94 | 0.98 | 0.97 | 0.97 |\n| monocyte | 127 | 0.65 | 0.51 | 0.75 | 0.68 | 0.00 | 0.70 | 0.95 | 0.97 | 0.95 |\n| plasma cell | 105 | 0.94 | 0.84 | 0.99 | 0.55 | 0.00 | 0.97 | 1.00 | 0.98 | 1.00 |\n| endothelial cell of lymphatic vessel | 89 | 0.93 | 0.93 | 0.97 | 0.94 | 0.00 | 0.91 | 0.98 | 0.97 | 0.97 |\n| regulatory T cell | 83 | 0.49 | 0.02 | 0.65 | 0.07 | 0.00 | 0.83 | 0.85 | 0.88 | 0.83 |\n| mast cell | 65 | 0.97 | 0.98 | 0.98 | 0.71 | 0.00 | 0.96 | 0.97 | 0.96 | 0.98 |\n| Schwann cell | 31 | 0.56 | 0.57 | 0.70 | 0.55 | 0.00 | 0.83 | 0.98 | 0.95 | 0.85 |\n| taste receptor cell | 30 | 0.82 | 0.50 | 0.89 | 0.72 | 0.00 | 0.28 | 0.98 | 0.68 | 0.97 |\n| myeloid dendritic cell | 17 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.34 | 1.00 | 1.00 | 0.69 |\n| natural killer cell | 8 | 0.00 | 0.00 | 0.22 | 0.00 | 0.00 | 0.52 | 0.94 | 1.00 | 0.40 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 1643 | 0.86 | 0.89 | 0.93 | 0.91 | 0.00 | 0.85 | 0.86 | 0.89 | 0.91 |\n| stratified squamous epithelial cell | 1174 | 0.85 | 0.88 | 0.91 | 0.89 | 0.00 | 0.84 | 0.83 | 0.86 | 0.88 |\n| CD4-positive, alpha-beta T cell | 156 | 0.69 | 0.71 | 0.76 | 0.68 | 0.00 | 0.68 | 0.71 | 0.73 | 0.77 |\n| fibroblast | 179 | 0.98 | 0.96 | 0.98 | 0.97 | 0.00 | 0.96 | 0.97 | 0.96 | 0.97 |\n| B cell | 125 | 0.98 | 0.98 | 0.98 | 0.94 | 0.00 | 0.95 | 0.96 | 0.96 | 0.98 |\n| endothelial cell | 131 | 0.96 | 0.98 | 0.99 | 0.98 | 0.00 | 0.99 | 0.98 | 0.97 | 0.98 |\n| CD8-positive, alpha-beta T cell | 124 | 0.75 | 0.75 | 0.78 | 0.69 | 0.00 | 0.77 | 0.75 | 0.77 | 0.78 |\n| salivary gland cell | 83 | 0.89 | 0.18 | 0.92 | 0.86 | 0.00 | 0.72 | 0.89 | 0.87 | 0.93 |\n| mural cell | 60 | 0.92 | 0.91 | 0.94 | 0.92 | 0.00 | 0.91 | 0.93 | 0.94 | 0.93 |\n| macrophage | 55 | 0.79 | 0.82 | 0.85 | 0.84 | 0.00 | 0.80 | 0.80 | 0.78 | 0.83 |\n| myoepithelial cell | 27 | 0.84 | 0.00 | 0.93 | 0.92 | 0.00 | 0.73 | 0.87 | 0.86 | 0.90 |\n| tongue muscle cell | 13 | 0.81 | 0.85 | 0.85 | 0.83 | 0.00 | 0.73 | 0.81 | 0.76 | 0.81 |\n| T cell | 20 | 0.33 | 0.00 | 0.33 | 0.27 | 0.00 | 0.35 | 0.18 | 0.36 | 0.33 |\n| neutrophil | 18 | 0.97 | 1.00 | 1.00 | 0.95 | 0.00 | 0.95 | 1.00 | 0.97 | 0.97 |\n| monocyte | 12 | 0.58 | 0.56 | 0.62 | 0.54 | 0.00 | 0.47 | 0.47 | 0.32 | 0.64 |\n| plasma cell | 9 | 0.94 | 0.88 | 1.00 | 0.57 | 0.00 | 0.70 | 1.00 | 0.94 | 1.00 |\n| endothelial cell of lymphatic vessel | 7 | 0.71 | 0.71 | 0.71 | 0.86 | 0.00 | 0.63 | 0.92 | 0.73 | 0.77 |\n| regulatory T cell | 9 | 0.32 | 0.20 | 0.57 | 0.00 | 0.00 | 0.50 | 0.50 | 0.76 | 0.46 |\n| mast cell | 11 | 0.88 | 0.83 | 0.83 | 0.85 | 0.00 | 0.85 | 0.88 | 0.88 | 0.88 |\n| Schwann cell | 4 | 0.62 | 0.50 | 0.55 | 0.57 | 0.00 | 0.50 | 0.67 | 0.67 | 0.62 |\n| taste receptor cell | 2 | 0.67 | 0.67 | 0.67 | 0.67 | 0.00 | 0.25 | 0.67 | 0.50 | 0.67 |\n| myeloid dendritic cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 0.40 | 0.00 | 0.00 |\n| natural killer cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 14620 | 0.87 | 0.90 | 0.95 | 0.93 | 0.00 | 0.87 | 0.88 | 0.90 | 0.92 |\n| stratified squamous epithelial cell | 11139 | 0.86 | 0.91 | 0.94 | 0.92 | 0.00 | 0.87 | 0.87 | 0.89 | 0.91 |\n| CD4-positive, alpha-beta T cell | 1431 | 0.73 | 0.76 | 0.82 | 0.75 | 0.00 | 0.81 | 0.83 | 0.85 | 0.86 |\n| fibroblast | 1352 | 0.98 | 0.97 | 0.98 | 0.97 | 0.00 | 0.97 | 0.97 | 0.98 | 0.98 |\n| B cell | 1125 | 0.99 | 0.98 | 0.98 | 0.95 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| endothelial cell | 1090 | 0.95 | 0.98 | 0.98 | 0.97 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |\n| CD8-positive, alpha-beta T cell | 983 | 0.76 | 0.77 | 0.81 | 0.70 | 0.00 | 0.82 | 0.84 | 0.87 | 0.84 |\n| salivary gland cell | 765 | 0.87 | 0.17 | 0.92 | 0.87 | 0.00 | 0.72 | 0.93 | 0.92 | 0.92 |\n| mural cell | 558 | 0.91 | 0.91 | 0.94 | 0.93 | 0.00 | 0.94 | 0.97 | 0.96 | 0.94 |\n| macrophage | 515 | 0.80 | 0.88 | 0.88 | 0.86 | 0.00 | 0.90 | 0.96 | 0.95 | 0.92 |\n| myoepithelial cell | 243 | 0.84 | 0.03 | 0.90 | 0.86 | 0.00 | 0.77 | 0.91 | 0.90 | 0.92 |\n| tongue muscle cell | 189 | 0.85 | 0.85 | 0.88 | 0.84 | 0.00 | 0.83 | 0.97 | 0.95 | 0.92 |\n| T cell | 174 | 0.46 | 0.00 | 0.41 | 0.31 | 0.00 | 0.64 | 0.76 | 0.82 | 0.75 |\n| neutrophil | 136 | 0.92 | 0.95 | 0.96 | 0.95 | 0.00 | 0.96 | 0.98 | 0.97 | 0.97 |\n| monocyte | 127 | 0.62 | 0.67 | 0.67 | 0.65 | 0.00 | 0.68 | 0.94 | 0.96 | 0.86 |\n| plasma cell | 106 | 0.94 | 0.93 | 0.98 | 0.73 | 0.00 | 0.80 | 0.99 | 1.00 | 1.00 |\n| endothelial cell of lymphatic vessel | 90 | 0.94 | 0.95 | 0.95 | 0.86 | 0.00 | 0.83 | 0.97 | 0.98 | 0.96 |\n| regulatory T cell | 83 | 0.54 | 0.30 | 0.65 | 0.00 | 0.00 | 0.78 | 0.86 | 0.88 | 0.84 |\n| mast cell | 65 | 0.96 | 0.98 | 0.98 | 0.94 | 0.00 | 0.94 | 0.98 | 0.97 | 0.98 |\n| Schwann cell | 31 | 0.57 | 0.66 | 0.72 | 0.69 | 0.00 | 0.85 | 0.93 | 0.94 | 0.85 |\n| taste receptor cell | 30 | 0.82 | 0.60 | 0.78 | 0.78 | 0.00 | 0.38 | 0.97 | 0.74 | 0.89 |\n| myeloid dendritic cell | 18 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.77 | 1.00 | 1.00 | 0.62 |\n| natural killer cell | 8 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.56 | 0.94 | 0.94 | 0.55 |"
 }

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-oid sha256:b122c8e1a57ee64220db30eddbbbba1557a1609075c84f7b56bce2fc974207c8
-size 26617061
+oid sha256:da9a1c09affb351dc909f6f78799eb7d52cdd956e9f3133dda83853f60de62c9
+size 6975645

metadata.json

@@ -1,31 +0,0 @@
-{
-    "popv_version": "0.5.0",
-    "anndata_version": "0.11.3",
-    "setup_dict": {
-        "ref_labels_key": "popv_labels",
-        "ref_batch_key": "batch_key",
-        "unknown_celltype_label": "unassigned"
-    },
-    "prediction_keys": [
-        "popv_celltypist_prediction",
-        "popv_knn_bbknn_prediction",
-        "popv_knn_harmony_prediction",
-        "popv_knn_on_scvi_prediction",
-        "popv_onclass_prediction",
-        "popv_scanvi_prediction",
-        "popv_svm_prediction",
-        "popv_xgboost_prediction"
-    ],
-    "method_kwargs": {},
-    "methods": [
-        "CELLTYPIST",
-        "KNN_BBKNN",
-        "KNN_HARMONY",
-        "KNN_SCVI",
-        "ONCLASS",
-        "SCANVI_POPV",
-        "Support_Vector",
-        "XGboost"
-    ],
-    "cellxgene_url": "https://cellxgene.cziscience.com/e/55cf0ea3-9d2b-4294-871e-bb4b49a79fc7.cxg/"
-}

minified_ref_adata.h5ad

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:4125cd4ede5cf38431e1f2937b859fbbc0ba6d5cfb47edcfcee26675e4e36859
-size 56141016

preprocessing.json

@@ -2,13 +2,11 @@
     "gene_names": [
         "ENSG00000000003",
         "ENSG00000000938",
-        "ENSG00000001036",
         "ENSG00000001561",
         "ENSG00000002549",
         "ENSG00000002745",
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         "ENSG00000003147",
-        "ENSG00000003249",
         "ENSG00000003400",
         "ENSG00000003436",
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@@ -42,7 +40,6 @@
         "ENSG00000008311",
         "ENSG00000008516",
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-        "ENSG00000008869",
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@@ -78,7 +75,6 @@
         "ENSG00000018408",
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@@ -116,24 +112,22 @@
         "ENSG00000039139",
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-        "ENSG00000040608",
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         "ENSG00000042317",
         "ENSG00000044574",
         "ENSG00000046653",
         "ENSG00000046889",
         "ENSG00000047457",
         "ENSG00000047597",
+        "ENSG00000047621",
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@@ -159,6 +153,7 @@
         "ENSG00000056736",
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+        "ENSG00000057149",
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@@ -177,13 +172,11 @@
         "ENSG00000064201",
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-        "ENSG00000064601",
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-        "ENSG00000065154",
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@@ -191,7 +184,6 @@
         "ENSG00000065613",
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-        "ENSG00000065911",
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@@ -207,7 +199,6 @@
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-        "ENSG00000068489",
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@@ -219,7 +210,6 @@
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-        "ENSG00000070214",
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@@ -236,7 +226,6 @@
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-        "ENSG00000072571",
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@@ -265,7 +254,6 @@
         "ENSG00000075188",
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-        "ENSG00000075539",
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@@ -298,6 +286,7 @@
         "ENSG00000079308",
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+        "ENSG00000079393",
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@@ -306,8 +295,6 @@
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-        "ENSG00000081721",
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@@ -350,12 +337,10 @@
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-        "ENSG00000087253",
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-        "ENSG00000087586",
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@@ -372,7 +357,6 @@
         "ENSG00000089327",
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-        "ENSG00000089597",
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@@ -432,7 +416,6 @@
         "ENSG00000099282",
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-        "ENSG00000099864",
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@@ -505,7 +488,6 @@
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@@ -547,7 +529,6 @@
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-        "ENSG00000102471",
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@@ -559,10 +540,10 @@
         "ENSG00000102962",
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+        "ENSG00000103021",
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-        "ENSG00000103194",
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@@ -593,9 +574,7 @@
         "ENSG00000104442",
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-        "ENSG00000104635",
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-        "ENSG00000104728",
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@@ -625,8 +604,6 @@
         "ENSG00000105509",
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-        "ENSG00000105643",
-        "ENSG00000105655",
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@@ -642,11 +619,11 @@
         "ENSG00000105879",
         "ENSG00000105889",
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+        "ENSG00000105948",
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-        "ENSG00000105983",
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@@ -655,7 +632,6 @@
         "ENSG00000106100",
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-        "ENSG00000106278",
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@@ -696,11 +672,11 @@
         "ENSG00000107789",
         "ENSG00000107796",
         "ENSG00000107798",
+        "ENSG00000107807",
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-        "ENSG00000108094",
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@@ -730,7 +706,6 @@
         "ENSG00000109099",
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-        "ENSG00000109321",
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@@ -739,12 +714,9 @@
         "ENSG00000109674",
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-        "ENSG00000109756",
-        "ENSG00000109805",
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-        "ENSG00000109971",
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@@ -776,7 +748,6 @@
         "ENSG00000111252",
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-        "ENSG00000111271",
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@@ -814,7 +785,7 @@
         "ENSG00000111912",
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-        "ENSG00000112041",
+        "ENSG00000112115",
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@@ -825,13 +796,14 @@
         "ENSG00000112339",
         "ENSG00000112378",
         "ENSG00000112425",
-        "ENSG00000112511",
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         "ENSG00000112562",
+        "ENSG00000112739",
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+        "ENSG00000112936",
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@@ -880,7 +852,6 @@
         "ENSG00000114904",
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-        "ENSG00000115020",
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@@ -906,7 +877,6 @@
         "ENSG00000115474",
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-        "ENSG00000115524",
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@@ -918,14 +888,12 @@
         "ENSG00000115840",
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-        "ENSG00000115935",
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-        "ENSG00000116106",
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@@ -1001,7 +969,6 @@
         "ENSG00000119147",
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-        "ENSG00000119397",
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@@ -1016,6 +983,7 @@
         "ENSG00000119801",
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+        "ENSG00000119919",
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@@ -1031,18 +999,15 @@
         "ENSG00000120279",
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-        "ENSG00000120327",
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-        "ENSG00000120647",
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-        "ENSG00000120699",
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@@ -1070,6 +1035,7 @@
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+        "ENSG00000121807",
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@@ -1092,13 +1058,11 @@
         "ENSG00000123119",
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-        "ENSG00000123240",
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-        "ENSG00000123374",
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@@ -1106,7 +1070,6 @@
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-        "ENSG00000124103",
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@@ -1150,6 +1113,7 @@
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+        "ENSG00000125730",
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@@ -1159,6 +1123,7 @@
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+        "ENSG00000126218",
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@@ -1188,7 +1153,6 @@
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-        "ENSG00000127586",
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@@ -1220,12 +1184,9 @@
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@@ -1236,7 +1197,6 @@
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@@ -1275,7 +1235,6 @@
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-        "ENSG00000131023",
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@@ -1290,7 +1249,6 @@
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-        "ENSG00000131473",
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@@ -1309,11 +1267,9 @@
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@@ -1346,7 +1302,6 @@
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@@ -1374,7 +1329,6 @@
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@@ -1419,7 +1373,6 @@
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@@ -1468,7 +1421,6 @@
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@@ -1494,10 +1446,10 @@
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+        "ENSG00000137440",
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@@ -1507,6 +1459,7 @@
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+        "ENSG00000137675",
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@@ -1540,7 +1493,6 @@
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@@ -1553,6 +1505,7 @@
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@@ -1572,7 +1525,6 @@
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@@ -1588,11 +1540,9 @@
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@@ -1618,7 +1568,6 @@
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@@ -1630,7 +1579,6 @@
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@@ -1657,7 +1605,6 @@
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@@ -1672,7 +1619,6 @@
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@@ -1682,6 +1628,7 @@
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+        "ENSG00000143536",
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@@ -1719,7 +1666,6 @@
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@@ -1741,6 +1687,7 @@
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+        "ENSG00000145642",
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@@ -1781,7 +1728,6 @@
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@@ -1844,7 +1790,6 @@
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@@ -1873,7 +1818,6 @@
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@@ -2038,14 +1981,12 @@
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@@ -2092,6 +2033,7 @@
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@@ -2099,7 +2041,6 @@
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@@ -2122,8 +2063,8 @@
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@@ -2142,6 +2083,7 @@
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+        "ENSG00000162624",
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@@ -2162,7 +2104,6 @@
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@@ -2192,7 +2133,9 @@
         "ENSG00000163145",
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         "ENSG00000163171",
+        "ENSG00000163209",
         "ENSG00000163214",
+        "ENSG00000163216",
         "ENSG00000163220",
         "ENSG00000163273",
         "ENSG00000163297",
@@ -2237,6 +2180,7 @@
         "ENSG00000163909",
         "ENSG00000163918",
         "ENSG00000163930",
+        "ENSG00000163982",
         "ENSG00000164011",
         "ENSG00000164032",
         "ENSG00000164035",
@@ -2247,8 +2191,6 @@
         "ENSG00000164068",
         "ENSG00000164073",
         "ENSG00000164107",
-        "ENSG00000164114",
-        "ENSG00000164117",
         "ENSG00000164118",
         "ENSG00000164122",
         "ENSG00000164125",
@@ -2315,10 +2257,11 @@
         "ENSG00000165028",
         "ENSG00000165030",
         "ENSG00000165092",
+        "ENSG00000165118",
         "ENSG00000165124",
-        "ENSG00000165125",
         "ENSG00000165194",
         "ENSG00000165195",
+        "ENSG00000165197",
         "ENSG00000165300",
         "ENSG00000165304",
         "ENSG00000165312",
@@ -2328,7 +2271,6 @@
         "ENSG00000165457",
         "ENSG00000165474",
         "ENSG00000165480",
-        "ENSG00000165495",
         "ENSG00000165507",
         "ENSG00000165512",
         "ENSG00000165533",
@@ -2338,7 +2280,6 @@
         "ENSG00000165671",
         "ENSG00000165672",
         "ENSG00000165675",
-        "ENSG00000165678",
         "ENSG00000165685",
         "ENSG00000165716",
         "ENSG00000165730",
@@ -2361,7 +2302,6 @@
         "ENSG00000166033",
         "ENSG00000166073",
         "ENSG00000166086",
-        "ENSG00000166140",
         "ENSG00000166147",
         "ENSG00000166148",
         "ENSG00000166170",
@@ -2456,7 +2396,6 @@
         "ENSG00000168077",
         "ENSG00000168078",
         "ENSG00000168079",
-        "ENSG00000168101",
         "ENSG00000168175",
         "ENSG00000168209",
         "ENSG00000168229",
@@ -2504,15 +2443,15 @@
         "ENSG00000169255",
         "ENSG00000169258",
         "ENSG00000169282",
-        "ENSG00000169299",
         "ENSG00000169413",
         "ENSG00000169418",
         "ENSG00000169429",
         "ENSG00000169439",
         "ENSG00000169442",
         "ENSG00000169446",
+        "ENSG00000169469",
         "ENSG00000169504",
-        "ENSG00000169507",
+        "ENSG00000169509",
         "ENSG00000169515",
         "ENSG00000169554",
         "ENSG00000169598",
@@ -2550,6 +2489,8 @@
         "ENSG00000170426",
         "ENSG00000170442",
         "ENSG00000170448",
+        "ENSG00000170465",
+        "ENSG00000170477",
         "ENSG00000170624",
         "ENSG00000170631",
         "ENSG00000170745",
@@ -2581,12 +2522,10 @@
         "ENSG00000171408",
         "ENSG00000171425",
         "ENSG00000171448",
-        "ENSG00000171451",
         "ENSG00000171462",
         "ENSG00000171467",
         "ENSG00000171475",
         "ENSG00000171497",
-        "ENSG00000171533",
         "ENSG00000171574",
         "ENSG00000171604",
         "ENSG00000171631",
@@ -2634,7 +2573,6 @@
         "ENSG00000172901",
         "ENSG00000172935",
         "ENSG00000172985",
-        "ENSG00000173065",
         "ENSG00000173114",
         "ENSG00000173124",
         "ENSG00000173175",
@@ -2661,6 +2599,7 @@
         "ENSG00000173825",
         "ENSG00000173846",
         "ENSG00000173852",
+        "ENSG00000173947",
         "ENSG00000174059",
         "ENSG00000174080",
         "ENSG00000174099",
@@ -2672,7 +2611,6 @@
         "ENSG00000174370",
         "ENSG00000174371",
         "ENSG00000174405",
-        "ENSG00000174444",
         "ENSG00000174456",
         "ENSG00000174483",
         "ENSG00000174500",
@@ -2681,10 +2619,10 @@
         "ENSG00000174599",
         "ENSG00000174628",
         "ENSG00000174640",
+        "ENSG00000174672",
         "ENSG00000174705",
         "ENSG00000174718",
         "ENSG00000174721",
-        "ENSG00000174748",
         "ENSG00000174776",
         "ENSG00000174780",
         "ENSG00000174788",
@@ -2733,7 +2671,6 @@
         "ENSG00000176435",
         "ENSG00000176438",
         "ENSG00000176444",
-        "ENSG00000176472",
         "ENSG00000176473",
         "ENSG00000176485",
         "ENSG00000176490",
@@ -2749,7 +2686,6 @@
         "ENSG00000176909",
         "ENSG00000176927",
         "ENSG00000176971",
-        "ENSG00000177042",
         "ENSG00000177096",
         "ENSG00000177098",
         "ENSG00000177125",
@@ -2871,6 +2807,7 @@
         "ENSG00000181450",
         "ENSG00000181458",
         "ENSG00000181481",
+        "ENSG00000181617",
         "ENSG00000181631",
         "ENSG00000181634",
         "ENSG00000181638",
@@ -2888,7 +2825,6 @@
         "ENSG00000182057",
         "ENSG00000182093",
         "ENSG00000182134",
-        "ENSG00000182149",
         "ENSG00000182150",
         "ENSG00000182220",
         "ENSG00000182253",
@@ -2913,10 +2849,10 @@
         "ENSG00000182809",
         "ENSG00000182810",
         "ENSG00000182885",
-        "ENSG00000182901",
         "ENSG00000182902",
         "ENSG00000182916",
         "ENSG00000182952",
+        "ENSG00000182957",
         "ENSG00000182963",
         "ENSG00000182986",
         "ENSG00000183034",
@@ -2983,7 +2919,9 @@
         "ENSG00000184860",
         "ENSG00000184867",
         "ENSG00000184905",
+        "ENSG00000185010",
         "ENSG00000185019",
+        "ENSG00000185038",
         "ENSG00000185065",
         "ENSG00000185090",
         "ENSG00000185100",
@@ -2995,7 +2933,6 @@
         "ENSG00000185480",
         "ENSG00000185522",
         "ENSG00000185551",
-        "ENSG00000185559",
         "ENSG00000185585",
         "ENSG00000185591",
         "ENSG00000185614",
@@ -3044,7 +2981,6 @@
         "ENSG00000186594",
         "ENSG00000186603",
         "ENSG00000186642",
-        "ENSG00000186665",
         "ENSG00000186710",
         "ENSG00000186732",
         "ENSG00000186777",
@@ -3057,7 +2993,6 @@
         "ENSG00000186891",
         "ENSG00000186908",
         "ENSG00000186919",
-        "ENSG00000187013",
         "ENSG00000187068",
         "ENSG00000187079",
         "ENSG00000187189",
@@ -3065,7 +3000,6 @@
         "ENSG00000187240",
         "ENSG00000187266",
         "ENSG00000187325",
-        "ENSG00000187372",
         "ENSG00000187498",
         "ENSG00000187513",
         "ENSG00000187546",
@@ -3081,10 +3015,8 @@
         "ENSG00000187800",
         "ENSG00000187801",
         "ENSG00000187815",
-        "ENSG00000187838",
         "ENSG00000187957",
         "ENSG00000187961",
-        "ENSG00000188010",
         "ENSG00000188070",
         "ENSG00000188095",
         "ENSG00000188130",
@@ -3093,12 +3025,10 @@
         "ENSG00000188215",
         "ENSG00000188257",
         "ENSG00000188277",
-        "ENSG00000188295",
         "ENSG00000188313",
         "ENSG00000188321",
         "ENSG00000188322",
         "ENSG00000188389",
-        "ENSG00000188488",
         "ENSG00000188493",
         "ENSG00000188505",
         "ENSG00000188508",
@@ -3157,7 +3087,6 @@
         "ENSG00000196159",
         "ENSG00000196196",
         "ENSG00000196208",
-        "ENSG00000196233",
         "ENSG00000196247",
         "ENSG00000196290",
         "ENSG00000196329",
@@ -3167,6 +3096,7 @@
         "ENSG00000196368",
         "ENSG00000196371",
         "ENSG00000196378",
+        "ENSG00000196381",
         "ENSG00000196388",
         "ENSG00000196391",
         "ENSG00000196418",
@@ -3188,6 +3118,7 @@
         "ENSG00000196636",
         "ENSG00000196639",
         "ENSG00000196652",
+        "ENSG00000196659",
         "ENSG00000196664",
         "ENSG00000196689",
         "ENSG00000196724",
@@ -3225,7 +3156,6 @@
         "ENSG00000197256",
         "ENSG00000197291",
         "ENSG00000197299",
-        "ENSG00000197301",
         "ENSG00000197363",
         "ENSG00000197380",
         "ENSG00000197385",
@@ -3255,15 +3185,13 @@
         "ENSG00000197779",
         "ENSG00000197798",
         "ENSG00000197808",
-        "ENSG00000197837",
         "ENSG00000197841",
-        "ENSG00000197860",
         "ENSG00000197870",
         "ENSG00000197880",
         "ENSG00000197915",
         "ENSG00000197933",
-        "ENSG00000197935",
         "ENSG00000197951",
+        "ENSG00000197953",
         "ENSG00000198074",
         "ENSG00000198081",
         "ENSG00000198088",
@@ -3302,6 +3230,7 @@
         "ENSG00000198721",
         "ENSG00000198727",
         "ENSG00000198730",
+        "ENSG00000198734",
         "ENSG00000198746",
         "ENSG00000198756",
         "ENSG00000198763",
@@ -3319,7 +3248,6 @@
         "ENSG00000198853",
         "ENSG00000198855",
         "ENSG00000198860",
-        "ENSG00000198870",
         "ENSG00000198876",
         "ENSG00000198885",
         "ENSG00000198886",
@@ -3331,18 +3259,16 @@
         "ENSG00000198915",
         "ENSG00000198924",
         "ENSG00000198925",
-        "ENSG00000198932",
         "ENSG00000198938",
         "ENSG00000198947",
         "ENSG00000198948",
         "ENSG00000198954",
         "ENSG00000198959",
-        "ENSG00000203280",
-        "ENSG00000203288",
         "ENSG00000203684",
         "ENSG00000203697",
         "ENSG00000203747",
         "ENSG00000203782",
+        "ENSG00000203785",
         "ENSG00000203801",
         "ENSG00000203867",
         "ENSG00000203872",
@@ -3350,7 +3276,6 @@
         "ENSG00000203943",
         "ENSG00000203952",
         "ENSG00000204086",
-        "ENSG00000204131",
         "ENSG00000204138",
         "ENSG00000204149",
         "ENSG00000204175",
@@ -3360,7 +3285,6 @@
         "ENSG00000204248",
         "ENSG00000204252",
         "ENSG00000204257",
-        "ENSG00000204261",
         "ENSG00000204271",
         "ENSG00000204287",
         "ENSG00000204291",
@@ -3372,19 +3296,19 @@
         "ENSG00000204335",
         "ENSG00000204348",
         "ENSG00000204351",
-        "ENSG00000204420",
-        "ENSG00000204428",
         "ENSG00000204520",
         "ENSG00000204531",
+        "ENSG00000204544",
         "ENSG00000204577",
         "ENSG00000204592",
         "ENSG00000204604",
         "ENSG00000204618",
-        "ENSG00000204758",
+        "ENSG00000204620",
         "ENSG00000204764",
         "ENSG00000204832",
         "ENSG00000204839",
         "ENSG00000204843",
+        "ENSG00000204851",
         "ENSG00000204852",
         "ENSG00000204856",
         "ENSG00000204860",
@@ -3403,12 +3327,10 @@
         "ENSG00000205413",
         "ENSG00000205420",
         "ENSG00000205456",
-        "ENSG00000205464",
         "ENSG00000205502",
         "ENSG00000205517",
         "ENSG00000205542",
         "ENSG00000205560",
-        "ENSG00000205562",
         "ENSG00000205593",
         "ENSG00000205659",
         "ENSG00000205670",
@@ -3422,23 +3344,19 @@
         "ENSG00000206384",
         "ENSG00000206538",
         "ENSG00000206559",
+        "ENSG00000206567",
         "ENSG00000211445",
         "ENSG00000211448",
         "ENSG00000211460",
-        "ENSG00000211677",
-        "ENSG00000211679",
-        "ENSG00000211829",
         "ENSG00000212766",
         "ENSG00000213088",
         "ENSG00000213139",
         "ENSG00000213185",
-        "ENSG00000213190",
         "ENSG00000213203",
         "ENSG00000213281",
         "ENSG00000213468",
         "ENSG00000213516",
         "ENSG00000213533",
-        "ENSG00000213588",
         "ENSG00000213625",
         "ENSG00000213626",
         "ENSG00000213658",
@@ -3453,15 +3371,20 @@
         "ENSG00000214050",
         "ENSG00000214114",
         "ENSG00000214140",
+        "ENSG00000214248",
         "ENSG00000214290",
         "ENSG00000214353",
         "ENSG00000214357",
         "ENSG00000214548",
         "ENSG00000214575",
         "ENSG00000214652",
+        "ENSG00000214770",
         "ENSG00000214870",
+        "ENSG00000215014",
+        "ENSG00000215022",
         "ENSG00000215045",
         "ENSG00000215126",
+        "ENSG00000215187",
         "ENSG00000215196",
         "ENSG00000215241",
         "ENSG00000215251",
@@ -3469,7 +3392,6 @@
         "ENSG00000215458",
         "ENSG00000215475",
         "ENSG00000215808",
-        "ENSG00000215883",
         "ENSG00000216921",
         "ENSG00000217442",
         "ENSG00000218018",
@@ -3480,7 +3402,6 @@
         "ENSG00000221866",
         "ENSG00000221886",
         "ENSG00000221887",
-        "ENSG00000221890",
         "ENSG00000221946",
         "ENSG00000221947",
         "ENSG00000221949",
@@ -3489,24 +3410,26 @@
         "ENSG00000221994",
         "ENSG00000222035",
         "ENSG00000222047",
+        "ENSG00000223485",
         "ENSG00000223546",
         "ENSG00000223561",
         "ENSG00000223658",
-        "ENSG00000223865",
         "ENSG00000223891",
-        "ENSG00000223923",
         "ENSG00000223960",
         "ENSG00000224046",
         "ENSG00000224086",
         "ENSG00000224152",
+        "ENSG00000224228",
         "ENSG00000224358",
-        "ENSG00000224397",
         "ENSG00000224420",
         "ENSG00000224616",
+        "ENSG00000224635",
         "ENSG00000224660",
         "ENSG00000224687",
         "ENSG00000224729",
+        "ENSG00000224738",
         "ENSG00000224743",
+        "ENSG00000224746",
         "ENSG00000224790",
         "ENSG00000224805",
         "ENSG00000224812",
@@ -3514,11 +3437,13 @@
         "ENSG00000224846",
         "ENSG00000224934",
         "ENSG00000224940",
+        "ENSG00000225032",
         "ENSG00000225265",
+        "ENSG00000225335",
         "ENSG00000225342",
-        "ENSG00000225434",
         "ENSG00000225439",
         "ENSG00000225465",
+        "ENSG00000225489",
         "ENSG00000225518",
         "ENSG00000225526",
         "ENSG00000225556",
@@ -3532,11 +3457,12 @@
         "ENSG00000225938",
         "ENSG00000225975",
         "ENSG00000226137",
-        "ENSG00000226445",
         "ENSG00000226674",
         "ENSG00000226754",
+        "ENSG00000226756",
         "ENSG00000226791",
         "ENSG00000226808",
+        "ENSG00000226822",
         "ENSG00000226833",
         "ENSG00000226853",
         "ENSG00000226889",
@@ -3546,20 +3472,20 @@
         "ENSG00000227258",
         "ENSG00000227354",
         "ENSG00000227373",
-        "ENSG00000227392",
         "ENSG00000227630",
         "ENSG00000227896",
-        "ENSG00000227946",
-        "ENSG00000228013",
-        "ENSG00000228060",
+        "ENSG00000228079",
         "ENSG00000228192",
         "ENSG00000228223",
+        "ENSG00000228427",
         "ENSG00000228544",
         "ENSG00000228672",
         "ENSG00000228701",
         "ENSG00000228784",
         "ENSG00000228878",
-        "ENSG00000229388",
+        "ENSG00000228925",
+        "ENSG00000229178",
+        "ENSG00000229544",
         "ENSG00000229676",
         "ENSG00000229847",
         "ENSG00000230091",
@@ -3572,8 +3498,8 @@
         "ENSG00000230630",
         "ENSG00000230658",
         "ENSG00000230679",
-        "ENSG00000230844",
         "ENSG00000230910",
+        "ENSG00000230978",
         "ENSG00000231154",
         "ENSG00000231194",
         "ENSG00000231233",
@@ -3582,10 +3508,10 @@
         "ENSG00000231365",
         "ENSG00000231389",
         "ENSG00000231473",
-        "ENSG00000231500",
         "ENSG00000231507",
         "ENSG00000231742",
         "ENSG00000231789",
+        "ENSG00000231794",
         "ENSG00000231890",
         "ENSG00000231999",
         "ENSG00000232040",
@@ -3594,25 +3520,24 @@
         "ENSG00000232118",
         "ENSG00000232139",
         "ENSG00000232237",
-        "ENSG00000232564",
         "ENSG00000232629",
         "ENSG00000232645",
         "ENSG00000232653",
-        "ENSG00000232656",
         "ENSG00000232677",
-        "ENSG00000232838",
         "ENSG00000232859",
         "ENSG00000232977",
         "ENSG00000233117",
         "ENSG00000233175",
         "ENSG00000233203",
         "ENSG00000233220",
+        "ENSG00000233251",
         "ENSG00000233436",
         "ENSG00000233452",
         "ENSG00000233654",
         "ENSG00000233672",
         "ENSG00000233901",
         "ENSG00000234028",
+        "ENSG00000234147",
         "ENSG00000234336",
         "ENSG00000234350",
         "ENSG00000234390",
@@ -3621,15 +3546,16 @@
         "ENSG00000234661",
         "ENSG00000234690",
         "ENSG00000234694",
-        "ENSG00000234832",
         "ENSG00000234883",
+        "ENSG00000234902",
+        "ENSG00000234936",
         "ENSG00000234945",
         "ENSG00000235033",
         "ENSG00000235106",
         "ENSG00000235109",
         "ENSG00000235194",
+        "ENSG00000235236",
         "ENSG00000235280",
-        "ENSG00000235300",
         "ENSG00000235488",
         "ENSG00000235501",
         "ENSG00000235560",
@@ -3638,25 +3564,31 @@
         "ENSG00000235750",
         "ENSG00000235770",
         "ENSG00000235865",
-        "ENSG00000235897",
         "ENSG00000235899",
         "ENSG00000235919",
         "ENSG00000235927",
         "ENSG00000235947",
         "ENSG00000236144",
         "ENSG00000236213",
+        "ENSG00000236266",
         "ENSG00000236287",
+        "ENSG00000236514",
         "ENSG00000236526",
         "ENSG00000236609",
         "ENSG00000236617",
+        "ENSG00000236756",
         "ENSG00000236790",
         "ENSG00000236859",
+        "ENSG00000236924",
         "ENSG00000237125",
         "ENSG00000237149",
         "ENSG00000237172",
         "ENSG00000237181",
         "ENSG00000237187",
-        "ENSG00000237232",
+        "ENSG00000237343",
+        "ENSG00000237422",
+        "ENSG00000237429",
+        "ENSG00000237461",
         "ENSG00000237523",
         "ENSG00000237594",
         "ENSG00000237637",
@@ -3665,7 +3597,6 @@
         "ENSG00000237989",
         "ENSG00000238005",
         "ENSG00000238121",
-        "ENSG00000238164",
         "ENSG00000239388",
         "ENSG00000239453",
         "ENSG00000239636",
@@ -3676,44 +3607,47 @@
         "ENSG00000240184",
         "ENSG00000240204",
         "ENSG00000240303",
-        "ENSG00000240449",
+        "ENSG00000240401",
         "ENSG00000240498",
         "ENSG00000240583",
         "ENSG00000240859",
-        "ENSG00000241106",
         "ENSG00000241127",
         "ENSG00000241135",
         "ENSG00000241313",
-        "ENSG00000241316",
         "ENSG00000241399",
         "ENSG00000241644",
         "ENSG00000241684",
+        "ENSG00000241794",
         "ENSG00000241839",
         "ENSG00000241933",
         "ENSG00000242110",
         "ENSG00000242247",
         "ENSG00000242265",
         "ENSG00000242474",
+        "ENSG00000242553",
         "ENSG00000242574",
         "ENSG00000242759",
+        "ENSG00000243155",
         "ENSG00000243244",
         "ENSG00000243566",
         "ENSG00000243660",
         "ENSG00000243701",
         "ENSG00000243710",
         "ENSG00000243943",
-        "ENSG00000244005",
         "ENSG00000244041",
         "ENSG00000244184",
         "ENSG00000244219",
         "ENSG00000244242",
         "ENSG00000244300",
         "ENSG00000244405",
+        "ENSG00000244459",
         "ENSG00000244486",
         "ENSG00000244734",
         "ENSG00000244968",
         "ENSG00000245017",
+        "ENSG00000245025",
         "ENSG00000245149",
+        "ENSG00000245156",
         "ENSG00000245213",
         "ENSG00000245498",
         "ENSG00000245571",
@@ -3723,40 +3657,45 @@
         "ENSG00000245954",
         "ENSG00000246100",
         "ENSG00000246174",
-        "ENSG00000246334",
-        "ENSG00000246379",
         "ENSG00000246430",
         "ENSG00000246526",
         "ENSG00000246662",
         "ENSG00000246695",
         "ENSG00000247081",
+        "ENSG00000247193",
         "ENSG00000247317",
+        "ENSG00000247934",
         "ENSG00000247950",
         "ENSG00000248008",
         "ENSG00000248092",
+        "ENSG00000248144",
+        "ENSG00000248161",
+        "ENSG00000248240",
+        "ENSG00000248307",
         "ENSG00000248323",
         "ENSG00000248429",
         "ENSG00000248441",
         "ENSG00000248464",
         "ENSG00000248473",
+        "ENSG00000248559",
+        "ENSG00000248712",
         "ENSG00000248801",
         "ENSG00000248866",
-        "ENSG00000249087",
         "ENSG00000249167",
         "ENSG00000249242",
         "ENSG00000249249",
-        "ENSG00000249379",
         "ENSG00000249464",
         "ENSG00000249471",
         "ENSG00000249502",
         "ENSG00000249532",
         "ENSG00000249550",
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