| { | |
| "popv_version": "0.5.3", | |
| "anndata_version": "0.12.2", | |
| "scikit_learn_version": "1.7.2", | |
| "setup_dict": { | |
| "ref_labels_key": "cell_ontology_class", | |
| "ref_batch_key": "donor_assay", | |
| "unknown_celltype_label": "unknown" | |
| }, | |
| "prediction_keys": [ | |
| "popv_celltypist_prediction", | |
| "popv_knn_bbknn_prediction", | |
| "popv_knn_harmony_prediction", | |
| "popv_knn_on_scvi_prediction", | |
| "popv_onclass_prediction", | |
| "popv_scanvi_prediction", | |
| "popv_svm_prediction", | |
| "popv_xgboost_prediction" | |
| ], | |
| "method_kwargs": {}, | |
| "methods": [ | |
| "CELLTYPIST", | |
| "KNN_BBKNN", | |
| "KNN_HARMONY", | |
| "KNN_SCVI", | |
| "ONCLASS", | |
| "SCANVI_POPV", | |
| "Support_Vector", | |
| "XGboost" | |
| ], | |
| "cellxgene_url": "test", | |
| "organism": "Homo sapiens" | |
| } |