fit.json

{"n_filters": 32, "n_layers": 9, "name": "cherimoya.fold_0", "batch_size": 64, "adam_lr": 0.01, "in_window": 2114, "out_window": 1000, "max_jitter": 500, "reverse_complement": true, "reverse_complement_average": false, "summits": false, "max_epochs": 20, "negative_ratio": 0.25, "dtype": "float32", "device": "cuda", "early_stopping": 100, "verbose": true, "loss_weights": [1.333, 0.274], "training_chroms": ["chr2", "chr4", "chr5", "chr7", "chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr21", "chr22", "chrX", "chrY"], "validation_chroms": ["chr8", "chr20"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_0.bed", "valid_peaks.fold_0.bed", "test_peaks.fold_0.bed"], "exclusion_lists": ["ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_0.bed", "valid_nonpeaks.fold_0.bed", "test_nonpeaks.fold_0.bed"], "signals": [["ENCFF782CZN.bigWig", "ENCFF958KCU.bigWig"]], "controls": [["control.plus.bw", "control.minus.bw"]], "random_state": null, "performance_filename": null, "skip": false, "test_chroms": ["chr1", "chr3", "chr6"]}